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COVID-19: Daily Top 10 Papers


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Articles published in J Med Microbiol

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    March 2021
  1. COLE K, Atkins B, Llewelyn M, Paul J, et al
    Genomic investigation of clinically significant coagulase-negative staphylococci.
    J Med Microbiol. 2021 Mar 11. doi: 10.1099/jmm.0.001337.
    PubMed     Abstract available

  2. EMERAUD C, Yilmaz S, Fortineau N, Cuzon G, et al
    Quality indicators for blood culture: 1 year of monitoring with BacT/Alert Virtuo at a French hospital.
    J Med Microbiol. 2021;70.
    PubMed     Abstract available

    February 2021
  3. SENNEBY E, Hallstrom B, Rasmussen M
    Genetic relatedness of Streptococcus dysgalactiae isolates causing recurrent bacteraemia.
    J Med Microbiol. 2021 Feb 22. doi: 10.1099/jmm.0.001330.
    PubMed     Abstract available

    January 2021
  4. QUILLICI MCB, Resende DS, Goncalves IR, Royer S, et al
    Gram-negative bacilli bacteremia: a 7 year retrospective study in a referral Brazilian tertiary-care teaching hospital.
    J Med Microbiol. 2021;70.
    PubMed     Abstract available

  5. CHEN J, Zhao Y, Shang Y, Lin Z, et al
    The clinical significance of simultaneous detection of pathogens from bronchoalveolar lavage fluid and blood samples by metagenomic next-generation sequencing in patients with severe pneumonia.
    J Med Microbiol. 2021;70.
    PubMed     Abstract available

    December 2020
  6. CORDOVANA M, Zignoli A, Ambretti S
    Rapid Sepsityper in clinical routine: 2 years' successful experience.
    J Med Microbiol. 2020;69:1398-1404.
    PubMed     Abstract available

    November 2020
  7. KAYA E, Tollapi L, Pastore A, Aringhieri G, et al
    Comparison of methods for the microbiological diagnosis of totally implantable venous access port-related infections.
    J Med Microbiol. 2020;69:1273-1284.
    PubMed     Abstract available

    August 2020
  8. KANESAKA I, Ito T, Shishido R, Nagashima M, et al
    Does sub-culturing of positive MRSA blood cultures affect vancomycin MICs?
    J Med Microbiol. 2020;69:1095-1099.
    PubMed     Abstract available

    July 2020
  9. AOYAGI T, Kishihara Y, Ogawa M, Ito Y, et al
    Characterization of Ba813 harbouring Bacillus cereus in patients with haematological malignancy and hospital environments at a medical centre in Japan.
    J Med Microbiol. 2020;69:999-1004.
    PubMed     Abstract available

  10. OZ Y, Onder S, Alpaslan E, Durmaz G, et al
    Does concomitant bacteraemia hide the fungi in blood cultures? An in vitro study.
    J Med Microbiol. 2020;69:944-948.
    PubMed     Abstract available

    June 2020
  11. LIU Y, Wang Q, Zhao C, Chen H, et al
    Prospective multi-center evaluation on risk factors, clinical characteristics and outcomes due to carbapenem resistance in Acinetobacter baumannii complex bacteraemia: experience from the Chinese Antimicrobial Resistance Surveillance of Nosocomial Inf
    J Med Microbiol. 2020 Jun 25. doi: 10.1099/jmm.0.001222.
    PubMed     Abstract available

  12. FALCONER K, Hammond R, Gillespie SH
    Improving the recovery and detection of bloodstream pathogens from blood culture.
    J Med Microbiol. 2020;69:806-811.
    PubMed     Abstract available

    May 2020
  13. KORD M, Salehi M, Khodavaisy S, Hashemi SJ, et al
    Epidemiology of yeast species causing bloodstream infection in Tehran, Iran (2015-2017); superiority of 21-plex PCR over the Vitek 2 system for yeast identification.
    J Med Microbiol. 2020;69:712-720.
    PubMed     Abstract available

    March 2020
  14. MCHUGH MP, Parcell BJ, MacKenzie FM, Templeton KE, et al
    Rapid molecular testing for Staphylococcus aureus bacteraemia improves clinical management.
    J Med Microbiol. 2020 Mar 6. doi: 10.1099/jmm.0.001171.
    PubMed     Abstract available

    December 2019
  15. PEIXOTO PB, Massinhani FH, Netto Dos Santos KR, Chamon RC, et al
    Methicillin-resistant Staphylococcus epidermidis isolates with reduced vancomycin susceptibility from bloodstream infections in a neonatal intensive care unit.
    J Med Microbiol. 2019 Dec 2. doi: 10.1099/jmm.0.001117.
    PubMed     Abstract available

    October 2019
  16. PAPADIMITRIOU-OLIVGERIS M, Kolonitsiou F, Solomou A, Karamouzos V, et al
    Breakthrough bloodstream infections in critically ill non-neutropenic patients: higher incidence and better survival than non-breakthrough infections.
    J Med Microbiol. 2019;68:1544-1551.
    PubMed     Abstract available

    September 2019
  17. MNIF B, Sallem N, Triki Z, Hammami A, et al
    A report on the first outbreak of emm89 group A streptococcus invasive infections in a burns unit in Tunisia.
    J Med Microbiol. 2019 Sep 4. doi: 10.1099/jmm.0.001071.
    PubMed     Abstract available

  18. SOBCZAK A, Klepacka J, Amrom D, Zak I, et al
    Umbilical catheters as vectors for generalized bacterial infection in premature infants regardless of antibiotic use.
    J Med Microbiol. 2019;68:1306-1313.
    PubMed     Abstract available

    August 2019
  19. LENZMEIER TD, Mudaliar NS, Stanbro JA, Watters C, et al
    Application of Lactobacillus gasseri 63 AM supernatant to Pseudomonas aeruginosa-infected wounds prevents sepsis in murine models of thermal injury and dorsal excision.
    J Med Microbiol. 2019 Aug 28. doi: 10.1099/jmm.0.001066.
    PubMed     Abstract available

  20. SAKAI J, Tarumoto N, Kodana M, Ashikawa S, et al
    An identification protocol for ESBL-producing Gram-negative bacteria bloodstream infections using a MinION nanopore sequencer.
    J Med Microbiol. 2019;68:1219-1226.
    PubMed     Abstract available

  21. PEETERS M, Ombelet S, Chung P, Tsoumanis A, et al
    Slow growth of Burkholderia pseudomallei compared to other pathogens in an adapted blood culture system in Phnom Penh, Cambodia.
    J Med Microbiol. 2019;68:1159-1166.
    PubMed     Abstract available

    May 2019
  22. INGLIS TJJ, Ekelund O
    Rapid antimicrobial susceptibility tests for sepsis; the road ahead.
    J Med Microbiol. 2019 May 30. doi: 10.1099/jmm.0.000997.
    PubMed     Abstract available

  23. BASCO MDS, Kothari A, McKinzie PB, Revollo JR, et al
    Reduced vancomycin susceptibility and increased macrophage survival in Staphylococcus aureus strains sequentially isolated from a bacteraemic patient during a short course of antibiotic therapy.
    J Med Microbiol. 2019 May 28. doi: 10.1099/jmm.0.000988.
    PubMed     Abstract available

    April 2019
  24. WILLIAMS PCM, Waichungo J, Gordon NC, Sharland M, et al
    The potential of fosfomycin for multi-drug resistant sepsis: an analysis of in vitro activity against invasive paediatric Gram-negative bacteria.
    J Med Microbiol. 2019 Apr 17. doi: 10.1099/jmm.0.000973.
    PubMed     Abstract available

  25. TONER G, Russell CD, Hamilton F, Templeton K, et al
    Phenotypic and molecular detection methods for carbapenemase-producing organisms and their clinical significance at two Scottish tertiary care hospitals.
    J Med Microbiol. 2019;68:560-565.
    PubMed     Abstract available

  26. ROHIT A, Suresh Kumar D, Dhinakaran I, Joy J, et al
    Whole-genome-based analysis reveals multiclone Serratia marcescens outbreaks in a non-Neonatal Intensive Care Unit setting in a tertiary care hospital in India.
    J Med Microbiol. 2019;68:616-621.
    PubMed     Abstract available

    March 2019
  27. ARASTEHFAR A, Daneshnia F, Salehi MR, Zarrinfar H, et al
    Molecular characterization and antifungal susceptibility testing of Candida nivariensis from blood samples - an Iranian multicentre study and a review of the literature.
    J Med Microbiol. 2019 Mar 29. doi: 10.1099/jmm.0.000963.
    PubMed     Abstract available

    February 2019
  28. GOLEBIEWSKA JE, Krawczyk B, Wysocka M, Ewiak A, et al
    Host and pathogen factors in Klebsiella pneumoniae upper urinary tract infections in renal transplant patients.
    J Med Microbiol. 2019 Feb 12. doi: 10.1099/jmm.0.000942.
    PubMed     Abstract available

  29. PEREMALO T, Madhavan P, Hamzah S, Than L, et al
    Antifungal susceptibilities, biofilms, phospholipase and proteinase activities in the Candida rugosa complex and Candida pararugosa isolated from tertiary teaching hospitals.
    J Med Microbiol. 2019 Feb 6. doi: 10.1099/jmm.0.000940.
    PubMed     Abstract available

  30. CHEN X, Zou Q, Zhang W, Wang R, et al
    Clinical features and microbiological characteristics of hospital- and community-onset Escherichia coli bloodstream infection.
    J Med Microbiol. 2019;68:178-187.
    PubMed     Abstract available

    January 2019
  31. KONTOPOULOU K, Iosifidis E, Antoniadou E, Tasioudis P, et al
    The clinical significance of carbapenem-resistant Klebsiella pneumoniae rectal colonization in critically ill patients: from colonization to bloodstream infection.
    J Med Microbiol. 2019 Jan 28. doi: 10.1099/jmm.0.000921.
    PubMed     Abstract available

  32. DOUGLAS AP, Marshall C, Baines SL, Ritchie D, et al
    Utilizing genomic analyses to investigate the first outbreak of vanA vancomycin-resistant Enterococcus in Australia with emergence of daptomycin non-susceptibility.
    J Med Microbiol. 2019 Jan 21. doi: 10.1099/jmm.0.000916.
    PubMed     Abstract available

  33. HUANG YL, Sun QL, Li JP, Hu YY, et al
    Evaluation of an in-house MALDI-TOF MS rapid diagnostic method for direct identification of micro-organisms from blood cultures.
    J Med Microbiol. 2019;68:41-47.
    PubMed     Abstract available

    November 2018
  34. ASHIKAWA S, Tarumoto N, Imai K, Sakai J, et al
    Rapid identification of pathogens from positive blood culture bottles with the MinION nanopore sequencer.
    J Med Microbiol. 2018;67:1589-1595.
    PubMed     Abstract available

    September 2018
  35. BURRACK-LANGE SC, Personne Y, Huber M, Winkler E, et al
    Multicenter assessment of the rapid Unyvero Blood Culture molecular assay.
    J Med Microbiol. 2018;67:1294-1301.
    PubMed     Abstract available

  36. PAYNE M, Champagne S, Lowe C, Leung V, et al
    Evaluation of the FilmArray Blood Culture Identification Panel compared to direct MALDI-TOF MS identification for rapid identification of pathogens.
    J Med Microbiol. 2018;67:1253-1256.
    PubMed     Abstract available

    July 2018
  37. SHANKAR C, Shankar BA, Manesh A, Veeraraghavan B, et al
    KPC-2 producing ST101 Klebsiella pneumoniae from bloodstream infection in India.
    J Med Microbiol. 2018;67:927-930.
    PubMed     Abstract available

    March 2018
  38. ANSON LW, Chau K, Sanderson N, Hoosdally S, et al
    DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing.
    J Med Microbiol. 2018;67:347-357.
    PubMed     Abstract available

    February 2018
  39. DEPRET F, Aubry A, Fournier A, Charles-Nelson A, et al
    beta LACTA testing may not improve treatment decisions made with MALDI-TOF MS-informed antimicrobial stewardship advice for patients with Gram-negative bacteraemia: a prospective comparative study.
    J Med Microbiol. 2018;67:183-189.
    PubMed     Abstract available

    January 2018
  40. KIM JH, Kim TS, Song SH, Choi J, et al
    Direct rapid antibiotic susceptibility test (dRAST) for blood culture and its potential usefulness in clinical practice.
    J Med Microbiol. 2018 Jan 12. doi: 10.1099/jmm.0.000678.
    PubMed     Abstract available

    December 2017
  41. NAGARATHNAMMA T, Chunchanur SK, Rudramurthy SM, Vineetha KR, et al
    Outbreak of Pichia kudriavzevii fungaemia in a neonatal intensive care unit.
    J Med Microbiol. 2017;66:1759-1764.
    PubMed     Abstract available

    November 2017
  42. CHAVES L, Tomich LM, Salomao M, Leite GC, et al
    High mortality of bloodstream infection outbreak caused by carbapenem-resistant P. aeruginosa producing SPM-1 in a bone marrow transplant unit.
    J Med Microbiol. 2017 Nov 2. doi: 10.1099/jmm.0.000631.
    PubMed     Abstract available

    August 2017
  43. BROWN LA, Mitchell AM, Mitchell TJ
    Streptococcus pneumoniae and lytic antibiotic therapy: are we adding insult to injury during invasive pneumococcal disease and sepsis?
    J Med Microbiol. 2017 Aug 10. doi: 10.1099/jmm.0.000545.
    PubMed     Abstract available

    July 2017
  44. GHEZZI MC, Brunetti G, Visconti V, Giordano A, et al
    Candidaemia in a tertiary care academic hospital in Italy. The impact of C. parapsilosis complex on the species distribution and antifungal susceptibility.
    J Med Microbiol. 2017;66:990-998.
    PubMed     Abstract available

  45. AFFOLABI D, Sogbo F, Laleye G, Orekan J, et al
    Rapid detection of extended-spectrum-beta-lactamase-producing Enterobacteriaceae in blood cultures using the ESBL NDP test in Cotonou, Benin.
    J Med Microbiol. 2017;66:884-887.
    PubMed     Abstract available

    June 2017
  46. ABERNETHY J, Sharland M, Johnson AP, Hope R, et al
    How do the epidemiology of paediatric methicillin-resistant Staphylococcus aureus and methicillin-susceptible Staphylococcus aureus bacteraemia differ?
    J Med Microbiol. 2017 Jun 9. doi: 10.1099/jmm.0.000489.
    PubMed     Abstract available

  47. HASHEM AA, Abd El Fadeal NM, Shehata AS
    In vitro activities of vancomycin and linezolid against biofilm-producing methicillin-resistant staphylococci species isolated from catheter-related bloodstream infections from an Egyptian tertiary hospital.
    J Med Microbiol. 2017 Jun 9. doi: 10.1099/jmm.0.000490.
    PubMed     Abstract available

    May 2017
  48. R NATH S, Jayapalan S, Nair H, Kusumakumary P, et al
    Comparative diagnostic test evaluation of serum procalcitonin and C-reactive protein in suspected bloodstream infections in children with cancer.
    J Med Microbiol. 2017;66:622-627.
    PubMed     Abstract available

  49. MARBACH H, Boakes E, Lynham S, Ward M, et al
    Identification of a distinctive phenotype for endocarditis-associated clonal complex 22 MRSA isolates with reduced vancomycin susceptibility.
    J Med Microbiol. 2017;66:584-591.
    PubMed     Abstract available

    March 2017
  50. MCCARTHY KL, Kidd TJ, Paterson DL
    Molecular epidemiology of Pseudomonas aeruginosa bloodstream infection isolates in a non-outbreak setting.
    J Med Microbiol. 2017;66:154-159.
    PubMed     Abstract available

    January 2017
  51. GOKBOLAT E, Oz Y, Metintas S
    The Evaluation of Three Different Bottles in BACTEC 9240 Automated Blood Culture System and Direct Identification of Candida species to Shorten the Turnaround Time of Blood Culture.
    J Med Microbiol. 2017 Jan 16. doi: 10.1099/jmm.0.000434.
    PubMed     Abstract available

    December 2016
  52. SPRINGER J, Lackner M, Ensinger C, Risslegger B, et al
    Clinical evaluation of a Mucorales-specific real-time PCR assay in tissue and serum samples.
    J Med Microbiol. 2016;65:1414-1421.
    PubMed     Abstract available

  53. MISRA R, Prasad KN
    Antimicrobial susceptibility to azithromycin among Salmonella enterica Typhi and Paratyphi A isolates from India.
    J Med Microbiol. 2016;65:1536-1539.
    PubMed     Abstract available

  54. CHEN CM, Chan KS, Cheng KC, Chou W, et al
    The exploration of risk factors of concurrent bacteraemia in patients critically ill with severe dengue.
    J Med Microbiol. 2016;65:1505-1511.
    PubMed     Abstract available

    November 2016
  55. MARGARITIS A, Galani I, Chatzikonstantinou M, Petrikkos G, et al
    Plasmid-mediated quinolone resistance determinants among Gram-negative bacteraemia isolates: A hidden threat.
    J Med Microbiol. 2016 Nov 28. doi: 10.1099/jmm.0.000397.
    PubMed     Abstract available

    October 2016
  56. LI S, Guo Y, Zhao C, Chen H, et al
    In vitro activities of tedizolid compared with other antibiotics against Gram-positive pathogens associated with hospital-acquired pneumonia, skin and soft tissue infection and bloodstream infection collected from 26 hospitals in China.
    J Med Microbiol. 2016;65:1215-1224.
    PubMed     Abstract available

    August 2016
  57. XU H, Zhou Y, Zhai X, Du Z, et al
    Emergence and characterization of tigecycline resistance in multidrug-resistant Klebsiella pneumoniae isolates from blood samples of patients in intensive care units in northern China.
    J Med Microbiol. 2016;65:751-9.
    PubMed     Abstract available

    July 2016
  58. WANG HY, Kim S, Kim J, Park SD, et al
    Comparison of multiplex real-time PCR and PCR-reverse blot hybridization assay for the direct and rapid detection of bacteria and antibiotic resistance determinants in positive culture bottles.
    J Med Microbiol. 2016 Jul 21. doi: 10.1099/jmm.0.000319.
    PubMed     Abstract available

    June 2016
  59. MENON V, Lahanas S, Janto C, Lee A, et al
    Utility of direct susceptibility testing on blood cultures: is it still worthwhile?
    J Med Microbiol. 2016;65:501-9.
    PubMed     Abstract available

    May 2016
  60. SZCZUKA E, Krzyminska S, Kaznowski A
    Clonality, virulence and the occurrence of genes encoding antibiotic resistance among Staphylococcus warneri isolates from bloodstream infections.
    J Med Microbiol. 2016 May 25. doi: 10.1099/jmm.0.000287.
    PubMed     Abstract available

  61. DELPORT JA, Mohorovic I, Burn S, McCormick JK, et al
    Rapid detection of methicillin resistant Staphylococcus aureus bacteremia using a combined three-hour short-Incubation-MALDI-ToF identification and the Alere culture colony PBP2a detection test.
    J Med Microbiol. 2016 May 23. doi: 10.1099/jmm.0.000285.
    PubMed     Abstract available

  62. MCCOY MH, Relich RF, Davis TE, Schmitt BH, et al
    Performance of the FilmArray(R) blood culture identification panel utilized by non-expert staff compared with conventional microbial identification and antimicrobial resistance gene detection from positive blood cultures.
    J Med Microbiol. 2016 May 11. doi: 10.1099/jmm.0.000277.
    PubMed     Abstract available

    December 2015
  63. PONGRACZ J, Benedek K, Juhasz E, Ivan M, et al
    In vitro biofilm production of Candida bloodstream isolates: any association with clinical characteristics?
    J Med Microbiol. 2015 Dec 17. doi: 10.1099/jmm.0.000207.
    PubMed     Abstract available

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