Home The Word Brain My Amedeo FAQ Privacy About


Hanzi Hunter

Learning 500 Chinese characters in 30 days is possible.

Abstract • About

  Bacterial Infections and Mycoses

  Free Subscription


Articles published in J Clin Microbiol

Retrieve available abstracts of 290 articles:
HTML format



Single Articles


    April 2026
  1. TOUATI A, Bercot B, Bebear C, Peuchant O, et al
    Evaluation of the UC-TIB-LGV assay for the genotyping of Chlamydia trachomatis in anorectal samples.
    J Clin Microbiol. 2026 Apr 9:e0006026. doi: 10.1128/jcm.00060.
    PubMed    


  2. NIELSEN MC, Ren P, Kavuri SB, Culbreath K, et al
    High-throughput multiplex detection of respiratory pathogens: multicenter evaluation of the NxTAG Respiratory Pathogen Panel v2 assay.
    J Clin Microbiol. 2026;64:e0174325.
    PubMed     Abstract available


  3. GREEN AL, Harris AD, Heller A, Vaeth E, et al
    Prevalence of Stenotrophomonas maltophilia colonization among patients receiving mechanical ventilation in long-term care facilities in Maryland, United States.
    J Clin Microbiol. 2026;64:e0162925.
    PubMed     Abstract available


  4. JEFFS MA, Chalmers G, Wong H, Sheth PM, et al
    resaCPE: a rapid, low-cost colorimetric assay for the detection of carbapenemase-producing Enterobacterales.
    J Clin Microbiol. 2026;64:e0100325.
    PubMed     Abstract available


  5. LANDIVAR SM, Melli LJ, Pichel M, Rivas M, et al
    Serology as an early diagnostic tool in pediatric patients with Shiga toxin-producing Escherichia coli-associated hemolytic uremic syndrome: a post hoc analysis of a phase 2 clinical trial.
    J Clin Microbiol. 2026;64:e0141525.
    PubMed     Abstract available


  6. HASHIMOTO K, Fukushima K, Matsumoto Y, Saito H, et al
    Comparison of culture and culture-free methods for comprehensive identification of mycobacteria: a single-center prospective study.
    J Clin Microbiol. 2026;64:e0112825.
    PubMed     Abstract available


  7. GU Y, Ibrahim BA, Gebremariam T, Alkhazraji S, et al
    Rapid and reliable diagnosis of mucormycosis using colorimetric loop-mediated isothermal amplification.
    J Clin Microbiol. 2026;64:e0179025.
    PubMed     Abstract available


  8. BHUIYAN MTR, Liu J, Juma J, Horne B, et al
    Optimizing Shigella isolation: a multi-site evaluation of laboratory culture methods for Shigella detection, speciation, and serotyping with different transport media and sample types in the Enterics for Global Health study.
    J Clin Microbiol. 2026;64:e0127925.
    PubMed     Abstract available


  9. GIBBONS S, Klenke C, Roy F, Schulz V, et al
    Development and evaluation of dried urine strip for genital chlamydia and gonorrhea testing.
    J Clin Microbiol. 2026 Apr 2:e0161825. doi: 10.1128/jcm.01618.
    PubMed     Abstract available


    March 2026
  10. RUDRA P, Parmar H, Daivaa N, Tran C, et al
    A cartridge-based assay for improved detection of multidrug-resistant Mycobacterium tuberculosis directly from sputum.
    J Clin Microbiol. 2026 Mar 30:e0110025. doi: 10.1128/jcm.01100.
    PubMed     Abstract available


  11. MURPHY SG, Ross T, Fitzgerald A, Gauthier NPG, et al
    Detecting healthcare-associated transmission and antifungal resistance in Candida auris via whole genome sequencing.
    J Clin Microbiol. 2026 Mar 25:e0134825. doi: 10.1128/jcm.01348.
    PubMed     Abstract available


  12. WANG X, Tian Y, Jin Y, Sui S, et al
    Comparison of ceftobiprole 5 mug disk diffusion, MIC test strip, and broth microdilution for susceptibility testing of Staphylococcus aureus clinical isolates.
    J Clin Microbiol. 2026 Mar 23:e0012526. doi: 10.1128/jcm.00125.
    PubMed     Abstract available


  13. GODET C, Joste V, Frat J-P, Khalil A, et al
    Non-fumigatus Aspergillus-associated pulmonary events: a diagnostic challenge.
    J Clin Microbiol. 2026 Mar 18:e0016326. doi: 10.1128/jcm.00163.
    PubMed     Abstract available


  14. KNEGENDORF L, Sommer A, Baier C, Weber RE, et al
    Genomic epidemiology of Enterococcus faecium bloodstream infections during a VanB-type VRE peak reveals an oligoclonal scenario: an observational study at a German university hospital (2017-2022).
    J Clin Microbiol. 2026 Mar 18:e0104425. doi: 10.1128/jcm.01044.
    PubMed     Abstract available


  15. PATEL K, Shea J, Lapierre P, Halse TA, et al
    Predicting isoniazid resistance in Mycobacterium tuberculosis complex in New York State using whole-genome sequencing.
    J Clin Microbiol. 2026 Mar 18:e0160925. doi: 10.1128/jcm.01609.
    PubMed     Abstract available


  16. SIMNER PJ
    The shift from "MIC-Only" back to carbapenemase testing among carbapenem-resistant Enterobacterales: what clinical laboratories need to know about updated CLSI guidance.
    J Clin Microbiol. 2026 Mar 18:e0045125. doi: 10.1128/jcm.00451.
    PubMed     Abstract available


  17. PASQUIER G, Harmand P-O, Le Feur L, Guemas E, et al
    Antifungal susceptibility and molecular characterization of clinical and environmental isolates of Schizophyllum commune.
    J Clin Microbiol. 2026;64:e0144225.
    PubMed     Abstract available


  18. GHANEM M, Harris A, Timilsina M, Chundru D, et al
    A standardized, genome-guided MLST scheme for Avibacterium paragallinarum: enhanced epidemiological typing and validation against existing methods.
    J Clin Microbiol. 2026;64:e0126725.
    PubMed     Abstract available


  19. DIRICKS M, Marschall L, Biciusca T, Zielbauer A-S, et al
    Genomic population structure, antimicrobial susceptibility, and clinical features of Mycobacterium xenopi isolates, Frankfurt, Germany, 1995-2020.
    J Clin Microbiol. 2026;64:e0151125.
    PubMed     Abstract available


  20. DUDOIGNON E, Deniau B, Tsague S, Hamane S, et al
    Characteristics of mycological criteria for the diagnosis of invasive mold infections in patients with severe burn injury.
    J Clin Microbiol. 2026;64:e0095025.
    PubMed     Abstract available


  21. WILLIAMS GA, Rahou S, Bateman O, Teng AA, et al
    Proteome microarray-guided identification of mycobacterial antigens and ELISA-based peptide mapping for improved serological detection of Mycobacterium bovis infection in European badgers.
    J Clin Microbiol. 2026;64:e0126025.
    PubMed     Abstract available


  22. DOMOUCHTSIDOU A, Ioannou P, Lianou A, Tsante KA, et al
    Biofilms in clinical infection: pathophysiology, diagnosis, and the evolving therapeutic landscape.
    J Clin Microbiol. 2026;64:e0104225.
    PubMed     Abstract available


  23. BORGES ALDSB, Aymee L, Lilenbaum W, Di Azevedo MIN, et al
    Revisiting genital leptospirosis in large animals: impacts on reproductive health, diagnostic challenges, and future directions.
    J Clin Microbiol. 2026;64:e0052525.
    PubMed     Abstract available


  24. TRINH MP, Shin SJ, Shin M-K
    Understanding recurrence in Mycobacterium avium complex pulmonary disease: genotypic strategies to support clinical decision-making.
    J Clin Microbiol. 2026;64:e0108625.
    PubMed     Abstract available


  25. GORMAN M, Fayne B, Rajeev S
    Diagnosis of leptospirosis in animals: challenges and perspectives.
    J Clin Microbiol. 2026;64:e0170024.
    PubMed     Abstract available


    February 2026
  26. TAN M, Guo Z, Wang Y, Xu X, et al
    Identification of Aspergillus at section and species levels by artificial intelligence-based microscopic morphology image recognition.
    J Clin Microbiol. 2026 Feb 27:e0001226. doi: 10.1128/jcm.00012.
    PubMed     Abstract available


  27. YANG Z, Ma Z, Liu Z, Li P, et al
    Accuracy of nanopore-based targeted next-generation sequencing assay for detection of Mycobacterium tuberculosis and drug resistance from non-sputum specimens: a multicenter prospective study in China.
    J Clin Microbiol. 2026 Feb 24:e0143325. doi: 10.1128/jcm.01433.
    PubMed     Abstract available


  28. HENIN N, Silvant A, Gardette M, Balcon C, et al
    Clinical performance of two commercial PCR assays for the detection of macrolide resistance in Mycoplasma pneumoniae.
    J Clin Microbiol. 2026 Feb 13:e0149125. doi: 10.1128/jcm.01491.
    PubMed     Abstract available


  29. REYES CURCIO F, McCallum J, Borrelli G, Orr B, et al
    The Brief Case: Adjudication of discrepant genotypic and phenotypic antimicrobial susceptibility testing results in a patient with Staphylococcus aureus bacteremia.
    J Clin Microbiol. 2026;64:e0080925.
    PubMed    


  30. BEN-CHETRIT E, Helviz Y, Levin PD
    Diagnostic value of blood culture growth patterns in distinguishing contaminants from pathogens.
    J Clin Microbiol. 2026;64:e0121025.
    PubMed     Abstract available


  31. SHIER KL, Gonzales G, Perez DAG, Bao JR, et al
    Performance of the Vitek 2, Sensititre, and Etest antimicrobial susceptibility testing systems for isolates of Burkholderia cepacia complex.
    J Clin Microbiol. 2026;64:e0048425.
    PubMed     Abstract available


  32. BISSONNETTE N, Ollier S, Brousseau J-P, Byrne AS, et al
    Systematic evaluation and optimization of TaqMan qPCR assays targeting F57, ISMAP02, and IS900 for multiplex detection of Mycobacterium avium subsp. paratuberculosis.
    J Clin Microbiol. 2026;64:e0087225.
    PubMed     Abstract available


  33. YAGUPSKY P
    It is time to have a molecular test for diagnosing Kingella kingae infections in the lab!
    J Clin Microbiol. 2026;64:e0153225.
    PubMed     Abstract available


  34. MAH JK, Lieu A, Banaei N
    Non-invasive diagnosis of invasive fungal disease with cell-free DNA PCR.
    J Clin Microbiol. 2026;64:e0123624.
    PubMed     Abstract available


  35. KOCHAN M, Russell V, Adam HJ, Karlowsky JA, et al
    False-positive Bioline TB Ag MPT64 result from MGIT bottles inoculated with Staphylococcus aureus.
    J Clin Microbiol. 2026 Feb 10:e0171125. doi: 10.1128/jcm.01711.
    PubMed    


  36. KALINICH CC, Gonzalez FL, Osmaston A, Breban MI, et al
    A tiled amplicon protocol for culture-free whole-genome sequencing of M. tuberculosis from clinical specimens.
    J Clin Microbiol. 2026 Feb 9:e0182325. doi: 10.1128/jcm.01823.
    PubMed     Abstract available


    January 2026
  37. TIAN Y, He X, Wu X, Liu Y, et al
    Performance of gradient diffusion strip and disk diffusion versus broth microdilution for lefamulin susceptibility testing of 422 Staphylococcus aureus isolates.
    J Clin Microbiol. 2026 Jan 23:e0157825. doi: 10.1128/jcm.01578.
    PubMed     Abstract available


  38. SIMMONS-WILLIAMS C, Soares L, Becker D, Lima A, et al
    Comparison of the VITEK REVEAL AST and Accelerate Pheno systems for fast antimicrobial susceptibility testing of gram-negative blood cultures at a large academic health system.
    J Clin Microbiol. 2026;64:e0107325.
    PubMed     Abstract available


  39. LIN Y-T, Lin H-H, Chen C-H, Tseng K-H, et al
    Interpretive agreement of susceptibility between broth microdilution and disk diffusion methods for cefiderocol, using criteria from the Clinical and Laboratory Standards Institute, European Committee on Antimicrobial Susceptibility Testing, and the F
    J Clin Microbiol. 2026;64:e0125525.
    PubMed     Abstract available


  40. HAAS PD, Kabugo J, Namutebi J, Tiemersma E, et al
    Evaluation of the Simple One-Step (SOS) stool method for Truenat MTB plus and Xpert MTB/XDR assay.
    J Clin Microbiol. 2026;64:e0104025.
    PubMed     Abstract available


  41. HOFFMANN H, Golubov A, Corbett C, Allamuratova D, et al
    Tuberculosis diagnosis and the complete drug resistance pattern from a single sample within a single day by use of a composite platform of MAX MDR-TB and AmPORE-TB.
    J Clin Microbiol. 2026 Jan 12:e0138825. doi: 10.1128/jcm.01388.
    PubMed     Abstract available


    December 2025
  42. JI HJ, Jang A-Y, Han SH, Kim M-K, et al
    Accurate serotype identification of Streptococcus pneumoniae using nanopore Cas9-targeted serotype identification (nCATSerotyping).
    J Clin Microbiol. 2025 Dec 30:e0098425. doi: 10.1128/jcm.00984.
    PubMed     Abstract available


  43. ZHANG SX, de Hoog S, Denning DW, Ahmed SA, et al
    Reaffirming the importance of nomenclature stability for Candida auris and its associated disease of candidiasis.
    J Clin Microbiol. 2025 Dec 23:e0155025. doi: 10.1128/jcm.01550.
    PubMed    


  44. ZHANG Y, Huo C, Zhang T, Liu Q, et al
    A novel Pyrococcus furiosus argonaute-based method for rapid and sensitive detection of Mycoplasma pneumoniae and a macrolide-resistance-related mutation.
    J Clin Microbiol. 2025 Dec 18:e0108925. doi: 10.1128/jcm.01089.
    PubMed     Abstract available


  45. GEFROH S, Meier B, Maddock K
    Veterinary method evaluation of Vitek-2 compact for antimicrobial susceptibility testing of Staphylococcus spp. and Enterococcus spp.
    J Clin Microbiol. 2025 Dec 17:e0096125. doi: 10.1128/jcm.00961.
    PubMed     Abstract available


  46. MCTAGGART LR, Scione A, Hillier K, Brown E, et al
    Toxigenic diphtheria rarely detected amid rising cases of nontoxigenic Corynebacterium diphtheriae infections in Ontario, Canada, 2011-2023.
    J Clin Microbiol. 2025;63:e0145225.
    PubMed     Abstract available


  47. RICKERTS V, Springer J, Gerkrath J, Korczynski D, et al
    Molecular diagnostics in cancer patients with suspected respiratory mold infections.
    J Clin Microbiol. 2025;63:e0120125.
    PubMed     Abstract available


  48. NEUPANE P, Maggi RG, Basnet M, Marconi RT, et al
    Development and validation of enzyme-linked immunosorbent assays for the serodiagnosis of canine bartonelloses.
    J Clin Microbiol. 2025;63:e0026725.
    PubMed     Abstract available


  49. DEMIR KK, Anderson G, Budvytiene I, Banaei N, et al
    Accuracy and actionability of mold PCR on bronchoalveolar lavage fluid for diagnosis of invasive mold disease.
    J Clin Microbiol. 2025;63:e0114525.
    PubMed     Abstract available


  50. BUI TI, Brown AP, Muenks CE, Dumm RE, et al
    Comparison of VITEK REVEAL fast antimicrobial susceptibility testing to antibiotic disk diffusion for gram-negative bloodstream infections.
    J Clin Microbiol. 2025;63:e0092725.
    PubMed     Abstract available


  51. YAKUBU RR, Merwede J, Viglione B, Patel V, et al
    Evaluation of the Hologic Panther Fusion investigational use only assays for gastrointestinal bacterial pathogens.
    J Clin Microbiol. 2025;63:e0073025.
    PubMed     Abstract available


  52. GONZALEZ K, Dien Bard J, Becker D, Bernier B, et al
    Multicenter clinical performance and comparative evaluation of the LIAISON PLEX Respiratory Flex Assay for syndromic detection of viral and bacterial pathogens in nasopharyngeal swabs.
    J Clin Microbiol. 2025;63:e0070825.
    PubMed     Abstract available


  53. VAN DER POL B, Arcenas R, Boraas C, Chavoustie S, et al
    Sensitivity and specificity of the Cobas Liat CT/NG/MG nucleic acid test in a clinical laboratory setting and point-of-care location.
    J Clin Microbiol. 2025;63:e0070625.
    PubMed     Abstract available


  54. LEE E, Jung WS, Lim CS, Jang WS, et al
    Development of a LAMP assay using hybridization-based TaqMan-style probes (HyTaq) for simultaneous detection of wild-type and macrolide-resistant Mycoplasma pneumoniae.
    J Clin Microbiol. 2025 Dec 17:e0129125. doi: 10.1128/jcm.01291.
    PubMed     Abstract available


  55. FENG Z, Ge S, Miao P, Liu M, et al
    Diagnostic performance of the Sanity 2.0 assay to detect resistance to rifampicin, isoniazid, and fluoroquinolones in tuberculosis.
    J Clin Microbiol. 2025 Dec 10:e0129925. doi: 10.1128/jcm.01299.
    PubMed     Abstract available


  56. OLABAMIJI JO, Ochei K, Daniel O, Eneogu R, et al
    Evaluation of stool-based testing to diagnose tuberculosis in children using the Truenat platform in routine settings in Nigeria.
    J Clin Microbiol. 2025 Dec 10:e0104125. doi: 10.1128/jcm.01041.
    PubMed     Abstract available


  57. LI Y, Lin W, Li Z, Tran T, et al
    Whole-genome sequencing-based pathogen characterization for streptococcal infection directly from positive blood culture samples.
    J Clin Microbiol. 2025 Dec 8:e0112625. doi: 10.1128/jcm.01126.
    PubMed     Abstract available


    November 2025
  58. FOUCHET T, Nait Chabane M, Allam C, Awad Z, et al
    Clinical evaluation of the diagnostic performances and treatment monitoring of the new PATHFAST TB LAM Ag assay in sputum specimens of patients with tuberculosis or with nontuberculous mycobacteria pulmonary disease.
    J Clin Microbiol. 2025 Nov 26:e0126925. doi: 10.1128/jcm.01269.
    PubMed     Abstract available


  59. AYALA JC, Hutton SM, Cartee JC, Reimche JL, et al
    A novel commensal Neisseria species harboring the gonococcal diagnostic marker DR-9 causes false-positive Roche cobas NAAT results.
    J Clin Microbiol. 2025 Nov 19:e0102225. doi: 10.1128/jcm.01022.
    PubMed     Abstract available


  60. XU Z, Huang Z, Yuan L, Wu H, et al
    Genomic surveillance reveals global spread of macrolide-resistant Bordetella pertussis linked to vaccine changes.
    J Clin Microbiol. 2025 Nov 14:e0106425. doi: 10.1128/jcm.01064.
    PubMed     Abstract available


  61. XU T, Zheng Y, Xue R, Li R, et al
    Retrospective analysis of non-tuberculous mycobacterial skin infections: diagnostic accuracy, treatment efficacy, and PCR-based species detection in a Chinese primary care hospital.
    J Clin Microbiol. 2025 Nov 13:e0106525. doi: 10.1128/jcm.01065.
    PubMed     Abstract available


  62. SABHARWAL L, Purpora A, Gerstbrein D, Konrad K, et al
    Performance evaluation of the QIAstat-Dx gastrointestinal panel 2 for the detection of Clostridioides difficile against multiple commercial assays.
    J Clin Microbiol. 2025;63:e0057625.
    PubMed     Abstract available


  63. SQUITIERI D, Menchinelli G, Magri C, D'Inzeo T, et al
    Improving time-to-result: head-to-head comparison of three rapid AST systems for Gram-negative bacteremia, including the newly developed VITEK REVEAL.
    J Clin Microbiol. 2025;63:e0105025.
    PubMed     Abstract available


  64. OYENIRAN SJ, Leber AL, Wang H
    An in-house Kingella kingae PCR in a large pediatric cohort: impact on diagnosis, antimicrobial stewardship, and clinical outcomes.
    J Clin Microbiol. 2025;63:e0098625.
    PubMed     Abstract available


  65. HICKMAN AF, Weber AF, Horn EJ, Gwynne PJ, et al
    The multiplexed single-tier InBios Lyme Detect Multiplex ELISA is more sensitive than standard two-tier tests in the early stages of Lyme disease.
    J Clin Microbiol. 2025;63:e0062925.
    PubMed     Abstract available


  66. SERNA C, Pulido-Vadillo M, Matamoros BR, Favieres JF, et al
    Persistent multispecies dissemination of armA-carrying IncR plasmids among clinical and environmental bacterial populations in a Spanish veterinary hospital.
    J Clin Microbiol. 2025;63:e0067325.
    PubMed     Abstract available


  67. SCHOTTHOEFER AM
    The potential to improve Lyme disease diagnostics through quantification of immunoglobulin class switching patterns.
    J Clin Microbiol. 2025;63:e0102025.
    PubMed     Abstract available


  68. CAO Y, Wang J, Fan Z, Xu L, et al
    An extraction-free, lyophilized one-pot RAA-CRISPR assay for point-of-care testing of Haemophilus influenzae.
    J Clin Microbiol. 2025;63:e0053525.
    PubMed     Abstract available


  69. RATTIN J, Boswell M, Rhoads D
    Emerging technologies for rapid phenotypic antimicrobial susceptibility testing of clinical isolates of bacteria.
    J Clin Microbiol. 2025;63:e0067425.
    PubMed     Abstract available


  70. BORMAN AM, Abdolrasouli A, Johnson EM
    Name changes for fungi of medical importance, 2022-2024.
    J Clin Microbiol. 2025;63:e0204124.
    PubMed     Abstract available


    October 2025
  71. LI K, Lacouture S, Weinert LA, Sekizaki T, et al
    Genomic re-evaluation of clinical isolates reveals a structured Streptococcus suis complex.
    J Clin Microbiol. 2025 Oct 31:e0103025. doi: 10.1128/jcm.01030.
    PubMed     Abstract available


  72. FOLKESSON E, Foroogh F, Kleberg L, Kjellgren V, et al
    A multiplex Mtb-specific FluoroSpot assay measuring IFNgamma, IL-2, and TNF-secreting cells can improve accuracy and differentiation across the tuberculosis spectrum.
    J Clin Microbiol. 2025 Oct 29:e0089425. doi: 10.1128/jcm.00894.
    PubMed     Abstract available


  73. ZHANG X, Yi X, Luo W, Wang J, et al
    Developing genome typing strategies for the emerging zoonotic pathogen Streptococcus parasuis.
    J Clin Microbiol. 2025 Oct 21:e0074125. doi: 10.1128/jcm.00741.
    PubMed     Abstract available


  74. MARXREITER S, Marino J, Callan K, Hargrave J, et al
    Rapid detection of gram-negative antimicrobial resistance determinants directly from positive blood culture broths using a multiplex PCR system.
    J Clin Microbiol. 2025 Oct 21:e0038425. doi: 10.1128/jcm.00384.
    PubMed     Abstract available


  75. BATAC ALR, Marks M, Tucker JD, Peeling RW, et al
    Syphilis self-testing and implications for syphilis control and prevention.
    J Clin Microbiol. 2025 Oct 21:e0098225. doi: 10.1128/jcm.00982.
    PubMed     Abstract available


  76. MOLENDIJK MM, Verkaik NJ, de Vogel CP, Lemmens-den Toom N, et al
    In vitro activity of antibiotic monotherapy and combination therapy with bacteriophages against Staphylococcus aureus LVAD-driveline infections.
    J Clin Microbiol. 2025 Oct 9:e0027225. doi: 10.1128/jcm.00272.
    PubMed     Abstract available


  77. BUEHNE KL, Lajos L, Lopansri B, Tate A, et al
    The Brief Case: How antibiotic pretreatment complicated the diagnosis of Haemophilus influenzae type a meningitis.
    J Clin Microbiol. 2025;63:e0054025.
    PubMed    


  78. BAYLESS DR, Dumais MG, McHugh JW, Ranganath N, et al
    Clinical and microbiologic features of Achromobacter species: a 10-year, multicenter experience.
    J Clin Microbiol. 2025;63:e0072425.
    PubMed     Abstract available


  79. YUKAWA K, Harada S, Komori K, Hayama B, et al
    Corynebacterium striatum infections in oncologic patients: clinical spectrum, resistance profiles, and evidence of nosocomial transmission.
    J Clin Microbiol. 2025;63:e0082925.
    PubMed     Abstract available


  80. KIENINGER B, Wagner GE, Rath A, Eichner A, et al
    Development and validation of a core genome multilocus sequence typing scheme for Citrobacter freundii: application in outbreak investigations and comparative analysis across the Citrobacter genus.
    J Clin Microbiol. 2025;63:e0086025.
    PubMed     Abstract available


  81. EICKHOFF MJ, Brown AP, Muenks CE, Porter ML, et al
    Evaluation of expert rules for carbapenemase class identification in Enterobacterales isolates using the VITEK2 susceptibility testing platform.
    J Clin Microbiol. 2025;63:e0076925.
    PubMed     Abstract available


  82. ARMSTRONG DT, Baird ECE, Pretty L, D'Agostino K, et al
    Diagnostics and new treatment regimens for TB: can the Xpert MTB/XDR assay fill the gap for fluoroquinolone testing?
    J Clin Microbiol. 2025;63:e0064325.
    PubMed     Abstract available


  83. MIDDLETON S, Singh M, Coad M, Palmer S, et al
    Optimization of a molecularly defined tuberculin formulation: recombinant fusion proteins and epitope surgery.
    J Clin Microbiol. 2025;63:e0055225.
    PubMed     Abstract available


  84. FIGUEIREDO-PEREIRA C, Fleming P, Alganes MN, Bi R, et al
    Analytical evaluation of TriVerity, a rapid diagnostic and prognostic host gene expression test performed on the Myrna instrument using RT-LAMP.
    J Clin Microbiol. 2025;63:e0035225.
    PubMed     Abstract available


  85. GLASGOW HL, Zheng Y, Brazelton JN, Tang L, et al
    Comparison of core genome multi-locus sequencing typing pipelines for hospital outbreak detection of common bacterial pathogens.
    J Clin Microbiol. 2025;63:e0064625.
    PubMed     Abstract available


  86. BROWN DG, Surette M, Ray S, Guo K, et al
    Paradoxical carbapenemase activity detected by modified carbapenemase inactivation (mCIM) method in Citrobacter sedlakii.
    J Clin Microbiol. 2025;63:e0058925.
    PubMed     Abstract available


  87. BOGAERTS B, Maex M, Commans F, Goeders N, et al
    Oxford Nanopore Technologies R10 sequencing enables accurate cgMLST-based bacterial outbreak investigation of Neisseria meningitidis and Salmonella enterica when accounting for methylation-related errors.
    J Clin Microbiol. 2025;63:e0041025.
    PubMed     Abstract available


  88. MITCHELL BI, Markantonis JE
    An underestimated pathogen: Corynebacterium species.
    J Clin Microbiol. 2025;63:e0155224.
    PubMed     Abstract available


    September 2025
  89. BRANDAO AP, Ferreira FMdA, Simeao FCdS, Ferrazoli L, et al
    Off-label evaluation of the BD MAX MDR-TB assay for rapid diagnosis of rifampicin and isoniazid resistance of Mycobacterium tuberculosis clinical isolates in a high-volume reference laboratory.
    J Clin Microbiol. 2025 Sep 23:e0091225. doi: 10.1128/jcm.00912.
    PubMed     Abstract available


  90. ZHAO C, Li G, Shen C, Xie Y, et al
    An extraction-free and one-pot two-temperature CRISPR/Cas12b system for visual detection of Group B Streptococcus by integrating with PRA.
    J Clin Microbiol. 2025 Sep 19:e0081925. doi: 10.1128/jcm.00819.
    PubMed     Abstract available


  91. CHEN Y, Tang H, Zheng J, Yang Q, et al
    Transforming tuberculosis diagnosis with clinical metagenomics: progress and roadblocks.
    J Clin Microbiol. 2025 Sep 19:e0053725. doi: 10.1128/jcm.00537.
    PubMed     Abstract available


  92. LEVIN AE, Wormser GP, Horn EJ, Karaseva N, et al
    A novel single-tier serologic test to diagnose all stages of Lyme disease.
    J Clin Microbiol. 2025;63:e0048325.
    PubMed     Abstract available


  93. CSIKI-FEJER E, Traczewski M, Procop GW, Davis TE, et al
    Performance evaluation of plazomicin susceptibility testing of Enterobacterales on VITEK 2 and VITEK 2 Compact Systems.
    J Clin Microbiol. 2025;63:e0044925.
    PubMed     Abstract available


  94. FISCHER-WELLENBORN M, Imkamp F, Pereira Pires V, Zbinden R, et al
    Antibiotic resistance profiles of seven genomospecies of Corynebacterium jeikeium analyzed by whole genome sequencing.
    J Clin Microbiol. 2025 Sep 3:e0041825. doi: 10.1128/jcm.00418.
    PubMed     Abstract available


    August 2025
  95. RISCH P, Broger T, Booi Z, Tiseo K, et al
    AveloMask, a novel breath aerosol collection kit for airborne Mycobacterium tuberculosis: a proof-of-principle assessment.
    J Clin Microbiol. 2025 Aug 21:e0054625. doi: 10.1128/jcm.00546.
    PubMed     Abstract available


  96. RAJAGOPALAN S, Das L, Kohlerschmidt DJ, Rourke AK, et al
    Luciferase reporter mycobacteriophage (TM4::GeNL) enables rapid assessment of drug susceptibilities and inducible macrolide resistance in Mycobacterium abscessus complex.
    J Clin Microbiol. 2025 Aug 20:e0084125. doi: 10.1128/jcm.00841.
    PubMed     Abstract available


  97. MAO Y, Lv R, Shao H, Zhao Y, et al
    An ELISA-like sensitive and visual detection system targeting Yersinia pestis based on CRISPR/Cas12a and DNAzyme.
    J Clin Microbiol. 2025;63:e0027425.
    PubMed     Abstract available


  98. YU Z, Wang R
    Genomic-enabled classification of three Mycobacteroides abscessus subspecies and an effective subspecies-specific identification method.
    J Clin Microbiol. 2025;63:e0069725.
    PubMed     Abstract available


  99. VEREECKE N, Yoon TB, Luo TL, Corey BW, et al
    An open-source nanopore-only sequencing workflow for analysis of clonal outbreaks delivers short-read level accuracy.
    J Clin Microbiol. 2025;63:e0066425.
    PubMed     Abstract available


  100. BHATTACHARJEE P, Hegde ST, Khan AI, Nabil IK, et al
    Rapid tests as a practical alternative to slide agglutination for the confirmation of V. cholerae O1.
    J Clin Microbiol. 2025;63:e0043325.
    PubMed     Abstract available


  101. NAIR N, Marques A, Horn EJ, Brown G, et al
    Class and isotype of VlsE-specific antibody differentiates Lyme disease stage.
    J Clin Microbiol. 2025;63:e0034725.
    PubMed     Abstract available


  102. SANCHEZ A, Rauch M, Buechner S, Jung-Hynes B, et al
    Percentage of culture confirmation and melting curve analysis reveals false-positive Campylobacter detection in a molecular syndromic panel.
    J Clin Microbiol. 2025;63:e0002825.
    PubMed     Abstract available


  103. MAH J, Lieu A, Nicholas V, Moreno A, et al
    Accuracy of plasma cell-free DNA PCR for non-invasive diagnosis of mucormycosis.
    J Clin Microbiol. 2025;63:e0079625.
    PubMed     Abstract available


  104. KITAGAWA D, Nishihara S, Murata M, Onishi M, et al
    PCR sensitivity for Mycoplasma pneumoniae detection in nasopharyngeal and oropharyngeal swabs: a comparative study.
    J Clin Microbiol. 2025;63:e0045825.
    PubMed     Abstract available


  105. BOSSERMAN RE, Tarlton NJ, Alvarado K, Roemmich B, et al
    Performance and workflow comparison of the VITEK MS PRIME and Bruker Biotyper MALDI-TOF MS systems.
    J Clin Microbiol. 2025;63:e0021125.
    PubMed     Abstract available


  106. SREDNIK ME, Shelkamy MMS, Hashish A, R De Macedo N, et al
    Development of selective culture media for efficient isolation of Avibacterium paragallinarum from chickens.
    J Clin Microbiol. 2025;63:e0031125.
    PubMed     Abstract available


  107. RHOADS DD, Hanson ND, Reedy K, Gafsi J, et al
    First description of the performance of the VITEK MITUBE device used with MALDI-TOF mass spectrometry to achieve identification of gram-negative bacteria directly from positive blood culture broth.
    J Clin Microbiol. 2025;63:e0012225.
    PubMed     Abstract available


  108. CLARK K, Joyee AG, Biddison D, Rabine S, et al
    Clinical development and performance of the First to Know Syphilis Self-Test for over-the-counter usage: a de novo rapid test for treponemal antibody.
    J Clin Microbiol. 2025 Aug 5:e0024425. doi: 10.1128/jcm.00244.
    PubMed     Abstract available


    July 2025
  109. HARADA S, Komori K, Yukawa K, Hayama B, et al
    Genomic epidemiology and antimicrobial resistance of Corynebacterium macclintockiae, the predominant species of human pathogens within the Corynebacterium jeikeium complex.
    J Clin Microbiol. 2025 Jul 24:e0050025. doi: 10.1128/jcm.00500.
    PubMed     Abstract available


  110. ROUSSELOT J, Millon L, Scherer E, Bourgeois N, et al
    Detection of Mucorales antigen in bronchoalveolar lavage samples using a newly developed lateral-flow device.
    J Clin Microbiol. 2025;63:e0022625.
    PubMed     Abstract available


  111. REN J, Xia J, Zhang M, Liu C, et al
    Automated identification of Salmonella serotype using MALDI-TOF mass spectrometry and machine learning techniques.
    J Clin Microbiol. 2025;63:e0003725.
    PubMed     Abstract available


  112. EMERY CL, Dhiman N, Chow S-K, Peterson G, et al
    Performance of the LIAISON PLEX yeast blood culture assay for identifying 16 invasive fungal pathogens in blood cultures.
    J Clin Microbiol. 2025;63:e0036225.
    PubMed     Abstract available


  113. SIOPI M, Leventaki S, Pachoulis I, Spruijtenburg B, et al
    Evaluation of the MIC test strips for antifungal susceptibility testing of Candidozyma auris (Candida auris) using a representative international collection of isolates.
    J Clin Microbiol. 2025 Jul 3:e0039925. doi: 10.1128/jcm.00399.
    PubMed     Abstract available


  114. CALDERA JR, Dayo A, Wiederhold N, Yang S, et al
    Development and validation of next-generation sequencing-based clinical test for triazole resistance prediction in Aspergillus fumigatus.
    J Clin Microbiol. 2025 Jul 1:e0029125. doi: 10.1128/jcm.00291.
    PubMed     Abstract available


  115. GHEBREKRISTOS Y, Auma E, Mahlobo Z, Venter R, et al
    Waste to worth: diagnostic accuracy of Xpert MTB/XDR on contaminated liquid cultures to salvage the detection of drug-resistant tuberculosis.
    J Clin Microbiol. 2025 Jul 1:e0058025. doi: 10.1128/jcm.00580.
    PubMed     Abstract available


    June 2025
  116. MENDES RE, Pierce JV, Wright K, Huband MD, et al
    Re-evaluation of penicillin and ceftriaxone MIC results to predict susceptibility to the oral cephalosporin, cefpodoxime, in Streptococcus pneumoniae clinical isolates from the United States according to CLSI guidelines (2019-2021).
    J Clin Microbiol. 2025 Jun 24:e0002725. doi: 10.1128/jcm.00027.
    PubMed     Abstract available


  117. KRUEGER T, Kadonsky G, Thelen E, Zapp A, et al
    Advanced specificity and sensitivity studies relative to a research use only transcription-mediated amplification-based assay for Treponema pallidum RNA detection.
    J Clin Microbiol. 2025 Jun 20:e0038825. doi: 10.1128/jcm.00388.
    PubMed     Abstract available


  118. MARBANIANG YV, Leto D, Almohri H, Hasan MR, et al
    Treatment and diagnostic challenges associated with the novel and rapidly emerging antifungal-resistant dermatophyte, Trichophyton indotineae.
    J Clin Microbiol. 2025;63:e0140724.
    PubMed     Abstract available


  119. MAYNARD R, Manuel C, Simpkins S, Haro M, et al
    Development of disk diffusion susceptibility test methods for Aerococcus spp. and updates to Clinical and Laboratory Standards Institute MIC breakpoints.
    J Clin Microbiol. 2025;63:e0011525.
    PubMed     Abstract available


  120. ZHAO C, Zhu J, Xiao Y, Li F, et al
    REL/DPA/AVI method: a novel approach for rapid detection of carbapenemase-producing Enterobacterales directly from positive blood cultures based on optical density.
    J Clin Microbiol. 2025;63:e0196024.
    PubMed     Abstract available


  121. LO S-H, Tseng Y-T, Chen Y-C, Ho M-W, et al
    In vitro activity of isavuconazole, ravuconazole, and comparison of the Sensititre YeastOne and CLSI broth microdilution methods against clinical isolates of Trichosporon species.
    J Clin Microbiol. 2025;63:e0031925.
    PubMed     Abstract available


  122. CAMPOS-MADUENO EI, Peirano G, Aldeia C, Elzi MV, et al
    Detection of ESBL-producing Klebsiella oxytoca complex with VITEK 2 system and screening cutoffs for implementing confirmatory tests.
    J Clin Microbiol. 2025;63:e0012825.
    PubMed     Abstract available


  123. DUTTA S, Jacobs MR, Good CE, Abdelhamed AM, et al
    Multicenter evaluation of the eQUANT system for use with disk diffusion AST of gram-negative bacteria directly from positive blood cultures.
    J Clin Microbiol. 2025;63:e0160624.
    PubMed     Abstract available


  124. HARRIS H, Stambaugh H, Jacobs E, Bhalodi A, et al
    Defining antimicrobial susceptibility testing methods and breakpoints among Achromobacter species.
    J Clin Microbiol. 2025;63:e0026425.
    PubMed     Abstract available


  125. TANG HM, Chen SC-A, Basile K, Halliday CL, et al
    Development and evaluation of a Pan-Mucorales Real-time PCR and a multiplex Real-time PCR for detection and identification of Rhizopus arrhizus, Rhizopus microsporus, and Mucor spp. in clinical specimens.
    J Clin Microbiol. 2025;63:e0193724.
    PubMed     Abstract available


  126. RICHTER SS, Dominguez EL, Hupp AA, Griffis M, et al
    Evaluation of MicroScan and VITEK 2 systems for susceptibility testing of Enterobacterales with updated breakpoints.
    J Clin Microbiol. 2025;63:e0004825.
    PubMed     Abstract available


  127. YAN A, Kus JV, Sant N
    The Staphylococcus aureus complex: implications for the clinical microbiology laboratory.
    J Clin Microbiol. 2025 Jun 4:e0127624. doi: 10.1128/jcm.01276.
    PubMed     Abstract available


  128. TU C, Su B, Xiong Y, Xia Z, et al
    Identification and quantification of gyrA variants in fluoroquinolone-resistant Mycobacterium tuberculosis in a MeltArray reaction.
    J Clin Microbiol. 2025 Jun 3:e0014625. doi: 10.1128/jcm.00146.
    PubMed     Abstract available


    May 2025
  129. DUTKIEWICZ M, Garros M, Bui J, Charlier V, et al
    Comparison of MALDI-TOF MS instruments and databases for the identification of uncommon yeasts, Aspergillus spp. and rare filamentous fungi.
    J Clin Microbiol. 2025 May 15:e0161224. doi: 10.1128/jcm.01612.
    PubMed     Abstract available


  130. SERGE DIAGBOUGA P, Djibougou AD, Pease C, Alcaide A, et al
    Preliminary performance of the VIDAS TB-IGRA as an aid in the diagnosis of individuals infected with Mycobacterium tuberculosis.
    J Clin Microbiol. 2025 May 14:e0164124. doi: 10.1128/jcm.01641.
    PubMed     Abstract available


  131. KILDEMOES AMO, Rai OSS, Westermann EPL, Johansen HFB, et al
    Detection of human IgG antibodies against Mycoplasma genitalium using a recombinant MG075 antigen.
    J Clin Microbiol. 2025;63:e0187624.
    PubMed     Abstract available


  132. GUERIN F, Sassi M, Gravey F, Zouari A, et al
    Lactobacillus delbrueckii subsp. allosunkii and lactis as emerging human uropathogens in elderly patients.
    J Clin Microbiol. 2025;63:e0207224.
    PubMed     Abstract available


  133. SIDDALL RL, Starkey JC, Patel R
    Automated whole genome sequencing platform for bacterial strain typing in clinical microbiology laboratories.
    J Clin Microbiol. 2025;63:e0017825.
    PubMed     Abstract available


  134. CAMPODONICO VL, Ruelle J, Fitzgerald A, Bergman Y, et al
    Evaluation of long-read 16S rRNA next-generation sequencing for identification of bacterial isolates in a clinical diagnostic laboratory.
    J Clin Microbiol. 2025;63:e0167024.
    PubMed     Abstract available


  135. CIMEN C, Siemer P, Sattler J, Voss A, et al
    Performance of disk diffusion, gradient test, and VITEK 2 for carbapenem susceptibility testing in OXA-48-like carbapenemase-producing Enterobacterales: a comparative study.
    J Clin Microbiol. 2025;63:e0189324.
    PubMed     Abstract available


  136. MILLEVILLE S, Rouabah L, Bernabeu S, Santerre Henriksen A, et al
    Performance of disc diffusion and four commercially available MIC tests to determine mecillinam susceptibility on carbapenemase-producing Enterobacterales.
    J Clin Microbiol. 2025;63:e0147324.
    PubMed     Abstract available


  137. MAO S, Yang X, Wang Y, Chen F, et al
    Ultrasensitive and highly specific detection of the Brucella genus and B. melitensis by CRISPR/Cas12b-multiple cross displacement amplification technique.
    J Clin Microbiol. 2025;63:e0153224.
    PubMed     Abstract available


  138. CANIFF KE, Al Musawa M, Judd C, Shupp M, et al
    Evaluating antimicrobial stewardship strategies in candidemia: a novel desirability of outcome ranking (DOOR) analysis comparing blood culture versus T2Candida diagnostic approaches.
    J Clin Microbiol. 2025;63:e0004325.
    PubMed     Abstract available


  139. SMITH DJ, Melhem MSC, Dirven J, de Azevedo CMPeS, et al
    Establishment of epidemiological cutoff values for Fonsecaea pedrosoi, the primary etiologic agent of chromoblastomycosis, and eight antifungal medications.
    J Clin Microbiol. 2025;63:e0190324.
    PubMed     Abstract available


  140. LI J, Dendukuri N, Longtin Y, Banz A, et al
    Determination of the performance of a novel diagnostic test for Clostridioides difficile toxins A and B using latent class analysis.
    J Clin Microbiol. 2025;63:e0180724.
    PubMed     Abstract available


  141. STREVA V, Gajewski J, Pento J, Chandrasekaran A, et al
    Multi-center evaluation of the Selux next-generation phenotyping system for gram-negative direct-from-positive blood culture antimicrobial susceptibility testing.
    J Clin Microbiol. 2025;63:e0181924.
    PubMed     Abstract available


  142. CANDELA A, Fernandez-Billon M, Aja-Macaya P, Gonzalez-Pinto L, et al
    Rapid prediction of carbapenemases in Pseudomonas aeruginosa by imipenem/relebactam and MALDI-TOF MS.
    J Clin Microbiol. 2025;63:e0110524.
    PubMed     Abstract available


  143. SOBKOWIAK A, Schwierzeck V, van Almsick V, Scherff N, et al
    The dark matter of bacterial genomic surveillance-antimicrobial resistance plasmid transmissions in the hospital setting.
    J Clin Microbiol. 2025 May 12:e0012125. doi: 10.1128/jcm.00121.
    PubMed     Abstract available


  144. WILLIAMS E, Karapanagiotidis T, Nicholson S, Toma H, et al
    Alternative treponemal serology assays for diagnosis and confirmation of syphilis in a diagnostic laboratory: a retrospective evaluation of four agglutination assays and one ELISA.
    J Clin Microbiol. 2025 May 9:e0176824. doi: 10.1128/jcm.01768.
    PubMed     Abstract available


    April 2025
  145. JIN Q-Y, Torres RC, Yang C, He LH, et al
    Population structure of Helicobacter pylori and antibiotic resistance-associated variants in a high-risk area of gastric cancer.
    J Clin Microbiol. 2025 Apr 11:e0003325. doi: 10.1128/jcm.00033.
    PubMed     Abstract available


  146. DIERCKX L, Rodriguez-Ruiz JP, Ekinci E, van Heirstraeten L, et al
    Pneumococcal genotype 23B1 as a driver of increased 23B serotype carriage, penicillin non-susceptibility, and invasive disease in Belgium: a retrospective analysis.
    J Clin Microbiol. 2025;63:e0169624.
    PubMed     Abstract available


  147. TURBAWATY DK, Maulida SN, Anadhea DR, Ritonga MA, et al
    Standard E TB-Feron ELISA and Standard F TB-Feron FIA positivity rates and agreement with QuantiFERON-TB Gold Plus among TB high-risk population in Bandung, Indonesia.
    J Clin Microbiol. 2025;63:e0148624.
    PubMed     Abstract available


  148. CZECH MM, Cuellar-Rodriguez J, Kwon-Chung KJ, Stock F, et al
    Clinical significance and antifungal susceptibility profile of 103 clinical isolates of Scedosporium species complex and Lomentospora prolificans obtained from NIH patients.
    J Clin Microbiol. 2025;63:e0155024.
    PubMed     Abstract available


  149. BIZOT E, Bonacorsi S, Labe P, Pinhas Y, et al
    Use of gastrointestinal syndromic multiplex molecular assays and detection of Escherichia coli pathotypes in pediatric wards.
    J Clin Microbiol. 2025;63:e0107324.
    PubMed     Abstract available


    March 2025
  150. GLASSMAN H, Ahmed-Bentley J, Buckman R, Carbungco M, et al
    Impact of packed red blood cells versus fresh whole human blood on the growth of nutritionally variant streptococci and Streptococcus anginosus group during verification of the BACT/ALERT VIRTUO blood culture system.
    J Clin Microbiol. 2025 Mar 31:e0198724. doi: 10.1128/jcm.01987.
    PubMed    


  151. EIGNER U, Koffer J, Betz U, Koglin J, et al
    Evaluation of the cobas MTB and MTB-RIF/INH assay in clinical samples for the detection of Mycobacterium tuberculosis in respiratory specimens.
    J Clin Microbiol. 2025 Mar 25:e0195924. doi: 10.1128/jcm.01959.
    PubMed     Abstract available


  152. LAMBERINK H, Huygens S, Aerts R, Lagrou K, et al
    Correction for Lamberink et al., "Multicenter validation of a galactomannan chemiluminescence immunoassay for the diagnosis of pulmonary aspergillosis on serum of patients with hematological disease".
    J Clin Microbiol. 2025 Mar 25:e0039425. doi: 10.1128/jcm.00394.
    PubMed    


  153. YU S, Liu N, Xie Z, Zeng Y, et al
    Nanopore sequencing for precise detection of Mycobacterium tuberculosis and drug resistance: a retrospective multicenter study in China.
    J Clin Microbiol. 2025 Mar 19:e0181324. doi: 10.1128/jcm.01813.
    PubMed     Abstract available


  154. MCMAHON J, Tomita N, Tatishev ES, Workman AA, et al
    A novel framework for the automated characterization of Gram-stained blood culture slides using a large-scale vision transformer.
    J Clin Microbiol. 2025;63:e0151424.
    PubMed     Abstract available


  155. WEIGL S, Dabernig-Heinz J, Granitz F, Lipp M, et al
    Improving Nanopore sequencing-based core genome MLST for global infection control: a strategy for GC-rich pathogens like Burkholderia pseudomallei.
    J Clin Microbiol. 2025;63:e0156924.
    PubMed     Abstract available


  156. JARAMILLO CARTAGENA A, Asowata OE, Ng D, Babady NE, et al
    An overview of the laboratory diagnosis of Pneumocystis jirovecii pneumonia.
    J Clin Microbiol. 2025;63:e0036124.
    PubMed     Abstract available


  157. GONZALEZ-LARA MF, Roman-Montes CM, Diaz-Lomeli P, Hernandez-Ceballos W, et al
    Comparison of the Filamentous Fungi Library v4.0 MALDI Biotyper Platform vs MSI-2 performance for identifying filamentous fungi from liquid cultures.
    J Clin Microbiol. 2025;63:e0137124.
    PubMed     Abstract available


  158. KOMINE T, Fukano H, Yoshida M, Miyamoto Y, et al
    A rapid and simple MALDI-TOF MS lipid profiling method for differentiating Mycobacterium ulcerans from Mycobacterium marinum.
    J Clin Microbiol. 2025;63:e0140024.
    PubMed     Abstract available


  159. CUELLA-MARTIN I, Runyambo D, De Bock S, Diels M, et al
    Direct thin-layer agar for bedaquiline-susceptibility testing of Mycobacterium tuberculosis at BSL2 level yields high accuracy in 15 days from sputum processing.
    J Clin Microbiol. 2025 Mar 3:e0180624. doi: 10.1128/jcm.01806.
    PubMed     Abstract available


    February 2025
  160. JORTH P, Manuel C, McLemore T, Humphries RM, et al
    Evaluation of antimicrobial susceptibility testing methods for Burkholderia cepacia complex isolates from people with and without cystic fibrosis.
    J Clin Microbiol. 2025;63:e0148024.
    PubMed     Abstract available


  161. WEYAND LK, Felts BL, Cassirer EF, Jenks JA, et al
    Fatal interactions: pneumonia in bighorn lambs following experimental exposure to carriers of Mycoplasma ovipneumoniae.
    J Clin Microbiol. 2025;63:e0132824.
    PubMed     Abstract available


  162. RANSOM EM, Wallace MA, Wiederhold NP, Canete-Gibas C, et al
    Evaluation of two MALDI-TOF MS systems and extraction methods for identification of filamentous fungi recovered from clinical specimens.
    J Clin Microbiol. 2025;63:e0154824.
    PubMed     Abstract available


  163. KHAN A, Manuel C, Maynard R, Humphries RM, et al
    Evaluation of piperacillin-tazobactam disks using contemporary Enterobacterales isolates suggests the need for disk potency optimization.
    J Clin Microbiol. 2025;63:e0159924.
    PubMed     Abstract available


  164. PEIRANO G, Pitout JDD
    Rapidly spreading Enterobacterales with OXA-48-like carbapenemases.
    J Clin Microbiol. 2025;63:e0151524.
    PubMed     Abstract available


  165. ROCCHI S, Scherer E, White PL, Guitton A, et al
    Interlaboratory assays from the fungal PCR Initiative and the Modimucor Study Group to improve qPCR detection of Mucorales DNA in serum: one more step toward standardization.
    J Clin Microbiol. 2025;63:e0152524.
    PubMed     Abstract available


  166. SAYEED MA, Nabil IK, Bhattacharjee P, Hossain MS, et al
    Assembly and performance of a cholera RDT prototype that detects both Vibrio cholerae and associated bacteriophage as a proxy for pathogen detection.
    J Clin Microbiol. 2025;63:e0144324.
    PubMed     Abstract available


  167. SANCHEZ GJ, Cuypers L, Laenen L, Majek P, et al
    Prediction of antimicrobial susceptibility of pneumococci based on whole-genome sequencing data: a direct comparison of two genomic tools to conventional antimicrobial susceptibility testing.
    J Clin Microbiol. 2025;63:e0107924.
    PubMed     Abstract available


  168. CINTRON M, Clark B, Miranda E, Babady NE, et al
    Utility of digital images captured after 4 h of incubation on a microbiology laboratory automation system in guiding the work-up of subcultures from positive blood cultures.
    J Clin Microbiol. 2025;63:e0132024.
    PubMed     Abstract available


  169. SCHWAB TC, Joseph L, Moono A, Goller PC, et al
    Field evaluation of nanopore targeted next-generation sequencing to predict drug-resistant tuberculosis from native sputum in South Africa and Zambia.
    J Clin Microbiol. 2025 Feb 12:e0139024. doi: 10.1128/jcm.01390.
    PubMed     Abstract available


    January 2025
  170. RICKMAN HM, Phiri MD, Mbale H, Horton KC, et al
    Low concordance between QIAreach QuantiFERON-TB, a novel interferon-gamma release assay, and QuantiFERON-TB Gold Plus, in a population-based survey in Blantyre, Malawi.
    J Clin Microbiol. 2025;63:e0132324.
    PubMed     Abstract available


  171. XU N, Wen S, Yao Y, Guan Y, et al
    Two-transcript signature for differentiation and clinical outcomes in severe fever with thrombocytopenia syndrome (SFTS) patients: a double-blind, multicenter, validation study.
    J Clin Microbiol. 2025;63:e0128224.
    PubMed     Abstract available


  172. TANSARLI GS, Falagas ME, Fang FC
    Clinical significance of toxin EIA positivity in patients with suspected Clostridioides difficile infection: systematic review and meta-analysis.
    J Clin Microbiol. 2025;63:e0097724.
    PubMed     Abstract available


  173. PERIYASAMY D, Huang Y, Hill JE
    Targeted syndromic next-generation sequencing panel for simultaneous detection of pathogens associated with bovine reproductive failure.
    J Clin Microbiol. 2025;63:e0143324.
    PubMed     Abstract available


  174. LIU H, Zhang L, Jiang M, Zhang Y, et al
    Rapid detection of carbapenemase production in Aeromonas using phenotypic tests based on colorimetric microtube assay.
    J Clin Microbiol. 2025;63:e0110424.
    PubMed     Abstract available


  175. CHOU C-H, Chao Q-T, Lu Y-S, Lee T-F, et al
    Comparison of the BluePoint MoldID oligonucleotide array and Bruker Biotyper MALDI-TOF MS for the identification of filamentous fungi.
    J Clin Microbiol. 2025;63:e0104824.
    PubMed     Abstract available


  176. CHEON DH, Jang H, Choi YK, Oh WS, et al
    Clinical evaluation of advanced MALDI-TOF MS for carbapenemase subtyping in Gram-negative isolates.
    J Clin Microbiol. 2025;63:e0147524.
    PubMed     Abstract available


  177. CANDELA A, Rodriguez-Temporal D, Lumbreras P, Guijarro-Sanchez P, et al
    Multicenter evaluation of Fourier transform infrared (FTIR) spectroscopy as a first-line typing tool for carbapenemase-producing Klebsiella pneumoniae in clinical settings.
    J Clin Microbiol. 2025;63:e0112224.
    PubMed     Abstract available


  178. MCTAGGART LR, Cronin K, Ruscica S, Patel SN, et al
    Emergence of terbinafine-resistant Trichophyton indotineae in Ontario, Canada, 2014-2023.
    J Clin Microbiol. 2025;63:e0153524.
    PubMed     Abstract available


  179. WINKLER ML, Deshpande L, Kimbrough JH, Karr M, et al
    Anidulafungin is a useful surrogate marker for predicting in vitro susceptibility to rezafungin among five Candida species using CLSI methods and interpretive criteria.
    J Clin Microbiol. 2025 Jan 22:e0112924. doi: 10.1128/jcm.01129.
    PubMed     Abstract available


  180. LAMBERINK H, Huygens S, Aerts R, Lagrou K, et al
    Multicenter validation of a galactomannan chemiluminescence immunoassay for the diagnosis of pulmonary aspergillosis on serum of patients with hematological disease.
    J Clin Microbiol. 2025 Jan 21:e0105324. doi: 10.1128/jcm.01053.
    PubMed     Abstract available


  181. GALI V, Al-Ghanamah R, Finnigan K, Kalchiem-Dekel O, et al
    Evaluating the clinical utility of Aspergillus, Mucorales, and Nocardia bronchoalveolar PCRs for the diagnosis of invasive pulmonary infections in patients with hematological malignancies.
    J Clin Microbiol. 2025 Jan 16:e0135524. doi: 10.1128/jcm.01355.
    PubMed     Abstract available


    December 2024
  182. OLSON AM, Wood RC, Weigel KM, Yan AJ, et al
    High-sensitivity detection of Mycobacterium tuberculosis DNA in tongue swab samples.
    J Clin Microbiol. 2024 Dec 31:e0114024. doi: 10.1128/jcm.01140.
    PubMed     Abstract available


  183. WINKLER ML, Rhomberg PR, Fedler KA, Huband MD, et al
    Use of voriconazole to predict susceptibility and resistance to isavuconazole for Aspergillus fumigatus using CLSI methods and interpretive criteria.
    J Clin Microbiol. 2024 Dec 20:e0120724. doi: 10.1128/jcm.01207.
    PubMed     Abstract available


  184. PENVEN M, Louazon M, Freret C, Sauron A, et al
    Comparative performances of the Qvella FAST system and conventional methods for rapid identification and antibiotic susceptibility testing on monomicrobial positive blood cultures.
    J Clin Microbiol. 2024 Dec 20:e0133224. doi: 10.1128/jcm.01332.
    PubMed     Abstract available


  185. AUPAIX A, Verroken A, Rodriguez-Villalobos H
    Evaluation of a new protocol for rapid identification of Streptococcus pneumoniae in blood cultures using the modified bile solubility test: Gram staining is still standing.
    J Clin Microbiol. 2024 Dec 18:e0122224. doi: 10.1128/jcm.01222.
    PubMed     Abstract available


  186. REN X, Suo B, Li C, Ping G, et al
    Comparative analysis of the detection of antibiotic genotypic resistance with gastric mucosa, gastric fluid, and fecal samples in patients with Helicobacter pylori infection.
    J Clin Microbiol. 2024 Dec 16:e0103424. doi: 10.1128/jcm.01034.
    PubMed     Abstract available


  187. GUIRAUD J, Piau C, Enault C, Nkpa Charron E, et al
    Comparison of the molecular FluoroType Mycobacteria VER 1.0 and the Maldi BioTyper Mycobacteria assays for the identification of non-tuberculous mycobacteria.
    J Clin Microbiol. 2024 Dec 11:e0120624. doi: 10.1128/jcm.01206.
    PubMed     Abstract available


  188. KHODADADI RB, El Zein S, Rivera O'Connor CG, Stevens RW, et al
    Retrospective analysis of antimicrobial susceptibility profiles of non-diphtheriae Corynebacterium species from a tertiary hospital and reference laboratory, 2012-2023.
    J Clin Microbiol. 2024;62:e0119924.
    PubMed     Abstract available


  189. DE HOOG S, Walsh TJ, Ahmed SA, Alastruey-Izquierdo A, et al
    Nomenclature for human and animal fungal pathogens and diseases: a proposal for standardized terminology.
    J Clin Microbiol. 2024;62:e0093724.
    PubMed     Abstract available


  190. TAWDE Y, Das S, Singh S, Basak S, et al
    Evaluation of Fungitell (1,3)-beta-D-glucan assay in tear samples for rapid diagnosis of fungal keratitis.
    J Clin Microbiol. 2024;62:e0120024.
    PubMed     Abstract available


  191. CARELLA A, Carroll KC, Munson E
    Update on novel validly published and included bacterial taxa derived from human clinical specimens and taxonomic revisions published in 2023.
    J Clin Microbiol. 2024;62:e0100424.
    PubMed     Abstract available


  192. LUU LDW, Rafique R, Payne M, Octavia S, et al
    Deciphering Bordetella pertussis epidemiology through culture-independent multiplex amplicon and metagenomic sequencing.
    J Clin Microbiol. 2024;62:e0117824.
    PubMed     Abstract available


  193. LANDIVAR SM, Melli LJ, Maiztegui C, Schesi C, et al
    A novel multiplex and glycoprotein-based immunochromatographic serologic IgM test for the rapid diagnosis of Escherichia coli O157 and O145 causing bloody diarrhea and hemolytic uremic syndrome.
    J Clin Microbiol. 2024;62:e0100324.
    PubMed     Abstract available


  194. SNYDER JW, Chaudhry N, Hoffmann W
    Performance of the LifeScale automated rapid phenotypic antimicrobial susceptibility testing on Gram-negative rods directly from positive blood cultures.
    J Clin Microbiol. 2024;62:e0092224.
    PubMed     Abstract available


    November 2024
  195. ALVAREZ OTERO J, Mandrekar J, Wolf MJ, Starkey JC, et al
    Pleural space infection microbiology as assessed using a clinical sequencing-based assay: Fusobacterium nucleatum group, Streptococcus intermedius, and other oral normal microbiota are the most common bacteria identified in community-acquired pleural
    J Clin Microbiol. 2024 Nov 25:e0069424. doi: 10.1128/jcm.00694.
    PubMed     Abstract available


  196. SABOUR S, Harrington KRV, Martinson E, Bhatnagar AS, et al
    Characterization of carbapenem-resistant Enterobacterales and Pseudomonas aeruginosa carrying multiple carbapenemase genes-Antimicrobial Resistance Laboratory Network, 2018-2022.
    J Clin Microbiol. 2024 Nov 20:e0122024. doi: 10.1128/jcm.01220.
    PubMed     Abstract available


  197. CHAN H-H, Wang Y-C, Jou R
    A simplified pyrazinamidase test for Mycobacterium tuberculosis pyrazinamide antimicrobial susceptibility testing.
    J Clin Microbiol. 2024 Nov 18:e0122724. doi: 10.1128/jcm.01227.
    PubMed     Abstract available


  198. OSTERMANN G, Korber-Irrgang B, Kruger A, Singh P, et al
    Performance evaluation of the Specific Reveal system for rapid antibiotic susceptibility testing from positive blood cultures containing Gram-negative pathogens.
    J Clin Microbiol. 2024 Nov 15:e0069224. doi: 10.1128/jcm.00692.
    PubMed     Abstract available


  199. CASTELLANOS LR, Chaffee R, Kumar H, Mezgebo BK, et al
    A novel machine-learning aided platform for rapid detection of urine ESBLs and carbapenemases: URECA-LAMP.
    J Clin Microbiol. 2024;62:e0086924.
    PubMed     Abstract available


  200. KERING K, Njaanake K, Wairimu C, Mureithi M, et al
    Shedding of nontyphoidal Salmonella by asymptomatic convalescing children under 5 years as a risk factor for invasive disease in Mukuru informal settlement in Nairobi, Kenya.
    J Clin Microbiol. 2024;62:e0075024.
    PubMed     Abstract available


  201. YOUNG EL, Roach DJ, Martinsen MA, McGrath GEG, et al
    Clinical pilot of bacterial transcriptional profiling as a combined genotypic and phenotypic antimicrobial susceptibility test.
    J Clin Microbiol. 2024;62:e0099724.
    PubMed     Abstract available


  202. LEE RA
    Clinical performance evaluation of the BioFire Joint Infection Panel.
    J Clin Microbiol. 2024;62:e0102224.
    PubMed     Abstract available


  203. PUTHAWALA CM, Feinn RS, Rivera-Vinas J, Lee H, et al
    Persistent bloodstream infection in children: examining the role for repeat blood cultures.
    J Clin Microbiol. 2024;62:e0099824.
    PubMed     Abstract available


  204. BIGGEL M, Cernela N, Horlbog JA, Stephan R, et al
    Oxford Nanopore's 2024 sequencing technology for Listeria monocytogenes outbreak detection and source attribution: progress and clone-specific challenges.
    J Clin Microbiol. 2024;62:e0108324.
    PubMed     Abstract available


  205. SMITH AC, Shrivastava A, Cartee JC, Belanger M, et al
    Whole-genome sequencing resolves biochemical misidentification of Neisseria species from urogenital specimens.
    J Clin Microbiol. 2024;62:e0070424.
    PubMed     Abstract available


  206. LEMON JK, Jankowsi-Romano C, Duong S, Juretschko S, et al
    Evaluation of gradient strip diffusion for susceptibility testing of aztreonam-avibactam in metallo-beta-lactamase-producing Enterobacterales.
    J Clin Microbiol. 2024;62:e0064924.
    PubMed     Abstract available


  207. BASHEER M, Sasic K, Carlsson A, Vestberg N, et al
    A novel LAMP-based assay for the identification of Streptococcus pneumoniae and Streptococcus pseudopneumoniae in clinical isolates.
    J Clin Microbiol. 2024 Nov 11:e0091224. doi: 10.1128/jcm.00912.
    PubMed     Abstract available


  208. IMAI K, Sato A, Tanaka M, Ohama Y, et al
    Prospective evaluation of non-invasive saliva specimens for the diagnosis of syphilis and molecular surveillance of Treponema pallidum.
    J Clin Microbiol. 2024 Nov 6:e0080924. doi: 10.1128/jcm.00809.
    PubMed     Abstract available


  209. NG S, Tan CY, Yah JY, Osman NAB, et al
    Evaluation of the QIAstat-Dx BCID GN and GPF kits for direct identification and antimicrobial resistance prediction from blood culture bottles.
    J Clin Microbiol. 2024 Nov 6:e0116924. doi: 10.1128/jcm.01169.
    PubMed     Abstract available


  210. SCHUB T, Klugherz I, Wagener J, Prattes J, et al
    Serum antigen tests for the diagnosis of invasive aspergillosis: a retrospective comparison of five Aspergillus antigen assays and one beta-D-glucan assay.
    J Clin Microbiol. 2024 Nov 4:e0095024. doi: 10.1128/jcm.00950.
    PubMed     Abstract available


    October 2024
  211. GIBERT C, Tirard-Collet P, Miossec C, Dupont D, et al
    Reverse-transcriptase real-time PCR in the diagnostic strategy for invasive infections caused by Aspergillus fumigatus.
    J Clin Microbiol. 2024 Oct 24:e0079124. doi: 10.1128/jcm.00791.
    PubMed     Abstract available


  212. GAEDDERT M, Glaser K, Chendi BH, Sultanli A, et al
    Host blood protein biomarkers to screen for tuberculosis disease: a systematic review and meta-analysis.
    J Clin Microbiol. 2024 Oct 24:e0078624. doi: 10.1128/jcm.00786.
    PubMed     Abstract available


  213. MCHUGH JW, Bayless DR, Ranganath N, Stevens RW, et al
    Candida guilliermondii fungemia: a 12-year retrospective review of antimicrobial susceptibility patterns at a reference laboratory and tertiary care center.
    J Clin Microbiol. 2024 Oct 23:e0105724. doi: 10.1128/jcm.01057.
    PubMed     Abstract available


  214. HAREL F, Robert-Gangneux F, Gangneux J-P, Guegan H, et al
    Monocentric evaluation of the Novaplex dermatophyte multiplex qPCR assay in the diagnosis of dermatophytoses.
    J Clin Microbiol. 2024;62:e0089424.
    PubMed     Abstract available


  215. BERINSON B, Davies E, Torpner J, Flinkfeldt L, et al
    A multicenter evaluation of a novel microfluidic rapid AST assay for Gram-negative bloodstream infections.
    J Clin Microbiol. 2024;62:e0045824.
    PubMed     Abstract available


  216. RIVAS L, Horn B, Armstrong B, Wright J, et al
    A case-control study and molecular epidemiology of yersiniosis in Aotearoa New Zealand.
    J Clin Microbiol. 2024;62:e0075424.
    PubMed     Abstract available


  217. M'IKANATHA NM, Goldblum ZS, Cesari N, Nawrocki EM, et al
    Outbreak-associated Salmonella Baildon found in wastewater demonstrates how sewage monitoring can supplement traditional disease surveillance.
    J Clin Microbiol. 2024;62:e0082524.
    PubMed     Abstract available


  218. HASAN R, Azizullah Z, Shams H, Dittrich S, et al
    Evaluation of a point-of-care multiplex immunochromatographic assay for the diagnosis of typhoid: results from a retrospective diagnostic accuracy study.
    J Clin Microbiol. 2024;62:e0042824.
    PubMed     Abstract available


  219. LEBER AL, Oyeniran SJ, Wang H
    Reduced sensitivity of a multiplex commercial respiratory panel for detection of Mycoplasma pneumoniae is due to specimen type.
    J Clin Microbiol. 2024;62:e0113924.
    PubMed    


  220. CAMPBELL S, Taylor B, Menouhos D, Hennessy J, et al
    Performance of MALDI-TOF MS, real-time PCR, antigen detection, and automated biochemical testing for the identification of Burkholderia pseudomallei.
    J Clin Microbiol. 2024;62:e0096124.
    PubMed     Abstract available


  221. MCMILLAN IA, Norris MH, Golon SJ, Franckowiak GA, et al
    Serosurveillance of Coxiella burnetii in feral swine populations of Hawai'i and Texas identifies overlap with human Q fever incidence.
    J Clin Microbiol. 2024;62:e0078024.
    PubMed     Abstract available


  222. SANTOS STREAUSLIN J, Nielsen DW, Schwartz KJ, Derscheid RJ, et al
    Characterization of neurologic disease-associated Streptococcus suis strains within the United States swine herd and use of diagnostic tools.
    J Clin Microbiol. 2024 Oct 8:e0037424. doi: 10.1128/jcm.00374.
    PubMed     Abstract available


    September 2024
  223. LUUKINEN B, Aittoniemi J, Miikkulainen-Lahti T, Mentula S, et al
    Evaluation of the STANDARD M10 MDR-TB and MTB/NTM assays for the detection of Mycobacterium tuberculosis, rifampicin and isoniazid resistance, and nontuberculous mycobacteria in a low-incidence setting.
    J Clin Microbiol. 2024 Sep 19:e0040224. doi: 10.1128/jcm.00402.
    PubMed     Abstract available


  224. MANUEL C, Maynard R, Simpkins S, Haro M, et al
    Evaluation of an expanded antibiotic resistance gene panel on prediction of antimicrobial susceptibility results for Gram-negative bacteria in blood cultures.
    J Clin Microbiol. 2024 Sep 19:e0102024. doi: 10.1128/jcm.01020.
    PubMed     Abstract available


  225. MITCHELL BI, Kling K, Bolon MK, Rathod SN, et al
    Identifying Candida auris transmission in a hospital outbreak investigation using whole-genome sequencing and SNP phylogenetic analysis.
    J Clin Microbiol. 2024 Sep 16:e0068024. doi: 10.1128/jcm.00680.
    PubMed     Abstract available


  226. EICKHOFF MJ, Dumm RE
    The Brief Case: Tricky Trichosporon asahii in the urinary tract.
    J Clin Microbiol. 2024;62:e0055724.
    PubMed    


  227. SCHWEBKE JR, Nyirjesy P, Dsouza M, Getman D, et al
    Vaginitis and risk of sexually transmitted infections: results of a multi-center U.S. clinical study using STI nucleic acid amplification testing.
    J Clin Microbiol. 2024;62:e0081624.
    PubMed     Abstract available


  228. KEHRMANN J, Stumpf AL, Dragaqina A, Buer J, et al
    Improved detection of mycobacteria in CF and tissue samples grown in mycobacteria growth indicator tube incubated at 30 degrees C compared to conventional growth conditions of liquid and solid media.
    J Clin Microbiol. 2024;62:e0068324.
    PubMed     Abstract available


  229. CABIBBE AM, Moghaddasi K, Batignani V, Morgan GSK, et al
    Nanopore-based targeted sequencing test for direct tuberculosis identification, genotyping, and detection of drug resistance mutations: a side-by-side comparison of targeted next-generation sequencing technologies.
    J Clin Microbiol. 2024 Sep 6:e0081524. doi: 10.1128/jcm.00815.
    PubMed     Abstract available


    August 2024
  230. RUMKE LW, Davies MA, Vestjens SMT, van der Putten BCL, et al
    Nationwide upsurge in invasive disease in the context of longitudinal surveillance of carriage and invasive Streptococcus pyogenes 2009-2023, the Netherlands: a molecular epidemiological study.
    J Clin Microbiol. 2024 Aug 28:e0076624. doi: 10.1128/jcm.00766.
    PubMed     Abstract available


  231. CHRISTIANS FC, Akhund-Zade J, Jarman K, Venkatasubrahmanyam S, et al
    Analytical and clinical validation of direct detection of antimicrobial resistance markers by plasma microbial cell-free DNA sequencing.
    J Clin Microbiol. 2024 Aug 28:e0042524. doi: 10.1128/jcm.00425.
    PubMed     Abstract available


  232. SMITH A, Wong-O'Brien B, Lieberman JA, Cookson BT, et al
    The Brief Case: A case of tinea corporis caused by drug-resistant Trichophyton indotineae identified by broad-range fungal DNA sequencing.
    J Clin Microbiol. 2024;62:e0023424.
    PubMed    


  233. CRAWFORD LC, Kidd SE
    Photo Quiz: Subungual organism in a renal transplant patient.
    J Clin Microbiol. 2024;62:e0171023.
    PubMed    


  234. BUENESTADO-SERRANO S, Martinez-Lirola M, Dippenaar A, Sanz-Perez A, et al
    Bridging the gap between molecular and genomic epidemiology in tuberculosis: inferring MIRU-VNTR patterns from genomic data.
    J Clin Microbiol. 2024 Aug 13:e0074124. doi: 10.1128/jcm.00741.
    PubMed     Abstract available


    July 2024
  235. OMAR SV, Louw G, Ismail F, Liu X, et al
    Performance evaluation of the Xpert MTB/XDR test for the detection of drug resistance to Mycobacterium tuberculosis among people diagnosed with tuberculosis in South Africa.
    J Clin Microbiol. 2024 Jul 26:e0022924. doi: 10.1128/jcm.00229.
    PubMed     Abstract available


  236. AKINAGA A, Takahashi M, Yamazaki T, Chikamatsu K, et al
    Development and preliminary evaluation toward a new tuberculosis treatment monitoring tool: the PATHFAST TB LAM Ag assay.
    J Clin Microbiol. 2024 Jul 19:e0062924. doi: 10.1128/jcm.00629.
    PubMed     Abstract available


  237. RATTIN J, Marigney K, Miranda C, Arrossi AV, et al
    The Brief Case: False-negative Pneumocystis PCR.
    J Clin Microbiol. 2024;62:e0009424.
    PubMed    


  238. MAUFFREY F, Bertelli C, Greub G, Senn L, et al
    Genomic evolution of ST228 SCCmec-I MRSA 10 years after a major nosocomial outbreak.
    J Clin Microbiol. 2024;62:e0020324.
    PubMed     Abstract available


  239. LEE H-W, Yu H-J, Kim H, Yun SA, et al
    Comparative evaluation of the STANDARD M10 and Xpert C. difficile assays for detection of toxigenic Clostridioides difficile in stool specimens.
    J Clin Microbiol. 2024;62:e0052424.
    PubMed     Abstract available


  240. SULLIVAN KV, Long T, Hillesland E, Rhoads DD, et al
    Low utilization of epidemiological cutoff values to interpret in vitro antifungal susceptibility testing among clinical laboratory participants in two College of American Pathologists (CAP) proficiency testing programs.
    J Clin Microbiol. 2024;62:e0042124.
    PubMed    


  241. MACCARI L, Ceriana P, Granchetti HN, Pezzaniti AV, et al
    Improved Blue Carba test and Carba NP test for detection and classification of major Class A and B carbapenemases, including dual producers, among Gram-negative bacilli.
    J Clin Microbiol. 2024;62:e0125523.
    PubMed     Abstract available


  242. BIVAND JM, Dyrhovden R, Sivertsen A, Tellevik MG, et al
    Broad-range amplification and sequencing of the rpoB gene: a novel assay for bacterial identification in clinical microbiology.
    J Clin Microbiol. 2024;62:e0026624.
    PubMed     Abstract available


  243. WANG H, Yu D, Chen X, Zhou Y, et al
    Performance of rapid on-site evaluation of touch imprints of bronchoscopic biopsies or lung tissue biopsies for the diagnosis of invasive pulmonary filamentous fungi infections in non-neutropenic patients.
    J Clin Microbiol. 2024;62:e0047924.
    PubMed     Abstract available


  244. HOCKMAN BE, Qi M, Rotblatt H, Borenstein L, et al
    Overcoming analytical and preanalytical challenges associated with extragenital home collected STI specimens.
    J Clin Microbiol. 2024;62:e0031124.
    PubMed     Abstract available


  245. ZHANG J, Xu J, Shen S, Ding L, et al
    Comparison of three colloidal gold immunoassays and GeneXpert Carba-R for the detection of Klebsiella pneumoniae bla(KPC-2) variants.
    J Clin Microbiol. 2024;62:e0015424.
    PubMed     Abstract available


  246. CHENG A, Das A, Styles CE, Naing Z, et al
    Improved efficiency using sequential automated immunoassays for syphilis screening in blood donors.
    J Clin Microbiol. 2024 Jul 15:e0047624. doi: 10.1128/jcm.00476.
    PubMed     Abstract available


  247. PIRES J, Brandal LT, Naseer U
    Development and implementation of a core genome multilocus sequence typing scheme for Yersinia enterocolitica: a tool for surveillance and outbreak detection.
    J Clin Microbiol. 2024 Jul 11:e0004024. doi: 10.1128/jcm.00040.
    PubMed     Abstract available


  248. BERTRAM R, Itzek A, Marr L, Manzke J, et al
    Divergent effects of emm types 1 and 12 on invasive group A streptococcal infections-results of a retrospective cohort study, Germany 2023.
    J Clin Microbiol. 2024 Jul 11:e0063724. doi: 10.1128/jcm.00637.
    PubMed     Abstract available


  249. ALLAN-BLITZ L-T, Villarreal D, Klausner JD
    IgM tests for detecting Treponema pallidum infection in newborns: time to establish a reference comparator.
    J Clin Microbiol. 2024 Jul 11:e0055124. doi: 10.1128/jcm.00551.
    PubMed    


    June 2024
  250. BANIK S, Ozay B, Trejo M, Zhu Y, et al
    A simple and sensitive test for Candida auris colonization, surveillance, and infection control suitable for near patient use.
    J Clin Microbiol. 2024 Jun 18:e0052524. doi: 10.1128/jcm.00525.
    PubMed     Abstract available


  251. PUTNAM NE, Tayabali K, Yu JR, Decolin I, et al
    The Brief Case: Yeast, chlamydospores, and hyphae-a case of disseminated mucormycosis.
    J Clin Microbiol. 2024;62:e0163823.
    PubMed    


  252. DABERNIG-HEINZ J, Wagner GE, Prior K, Lipp M, et al
    Core genome multilocus sequence typing (cgMLST) applicable to the monophyletic Klebsiella oxytoca species complex.
    J Clin Microbiol. 2024;62:e0172523.
    PubMed     Abstract available


  253. GOSHIA T, Aralar A, Wiederhold N, Jenks JD, et al
    Universal digital high-resolution melting for the detection of pulmonary mold infections.
    J Clin Microbiol. 2024;62:e0147623.
    PubMed     Abstract available


  254. BAKER AW, Nick SE, Jia F, Graves AM, et al
    Mycobacterium immunogenum acquisition from hospital tap water: a genomic and epidemiologic analysis.
    J Clin Microbiol. 2024;62:e0014924.
    PubMed     Abstract available


  255. HOYT KM, Barr JR, Hopkins AO, Dykes JK, et al
    Validation of a clinical assay for botulinum neurotoxins through mass spectrometric detection.
    J Clin Microbiol. 2024;62:e0162923.
    PubMed     Abstract available


  256. SCHEUTZ F, Nielsen CH, von Mentzer A
    Construction of the ETECFinder database for the characterization of enterotoxigenic Escherichia coli (ETEC) and revision of the VirulenceFinder web tool at the CGE website.
    J Clin Microbiol. 2024;62:e0057023.
    PubMed     Abstract available


  257. PEREYRE S, Henin N, Dolzy A, Guiraud J, et al
    Evaluation of commercial, customized microdilution plates for Ureaplasma parvum, Ureaplasma urealyticum, and Mycoplasma hominis antimicrobial susceptibility testing and determination of antimicrobial resistance prevalence in France.
    J Clin Microbiol. 2024 Jun 4:e0022624. doi: 10.1128/jcm.00226.
    PubMed     Abstract available


    May 2024
  258. SERRANO-LOBO J, Reigadas E, Munoz P, Escribano P, et al
    Azole resistance screening in Aspergillus fumigatus sensu stricto using the azole-containing agar method (EUCAST E.Def 10.2): conidial suspension filtration and inoculum adjustment before inoculum preparation may not be needed.
    J Clin Microbiol. 2024 May 31:e0036924. doi: 10.1128/jcm.00369.
    PubMed     Abstract available


  259. MISAS E, Seagle E, Jenkins EN, Rajeev M, et al
    Erratum for Misas et al., "Genomic description of acquired fluconazole- and echinocandin-resistance in patients with serial Candida glabrata isolates".
    J Clin Microbiol. 2024 May 22:e0060824. doi: 10.1128/jcm.00608.
    PubMed    


  260. ATTAWAY CC, Tobin E, Rhoads DD
    Photo Quiz: Unusual phenotypic and Lancefield group testing in blood culture isolate.
    J Clin Microbiol. 2024;62:e0118723.
    PubMed    


  261. FISHER J, Garrett EM
    The Brief Case: Cardiobacterium hominis endocarditis in a pediatric patient with congenital heart disease.
    J Clin Microbiol. 2024;62:e0156523.
    PubMed    


  262. HAMILTON-SETH R, Streva V, Gammel N, Campodonico VL, et al
    Evaluation of false-positive Rhodotorula detections by a multiplex PCR-based fungal panel performed on positive blood culture bottles.
    J Clin Microbiol. 2024;62:e0017924.
    PubMed    


  263. OSBORN LJ, Fissel J, Gomez S, Mestas J, et al
    Development of an automated amplicon-based next-generation sequencing pipeline for rapid detection of bacteria and fungi directly from clinical specimens.
    J Clin Microbiol. 2024;62:e0174923.
    PubMed     Abstract available


  264. LANDRY ML, Hassan S, Rottmann BG, Pesak SJ, et al
    Performance of two modified two-tier algorithms for the serologic diagnosis of Lyme disease.
    J Clin Microbiol. 2024;62:e0013924.
    PubMed     Abstract available


  265. JACOT D, Gizha S, Orny C, Fernandes M, et al
    Development and evaluation of an artificial intelligence for bacterial growth monitoring in clinical bacteriology.
    J Clin Microbiol. 2024;62:e0165123.
    PubMed     Abstract available


  266. MOSTAFA HH
    An evolution of Nanopore next-generation sequencing technology: implications for medical microbiology and public health.
    J Clin Microbiol. 2024;62:e0024624.
    PubMed     Abstract available


  267. BOGAERTS B, Van den Bossche A, Verhaegen B, Delbrassinne L, et al
    Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
    J Clin Microbiol. 2024;62:e0157623.
    PubMed     Abstract available


  268. FOUAD A, Simner PJ, Nicolau DP, Asempa TE, et al
    Comparison of BD Phoenix and disk diffusion to broth microdilution for determining cefepime susceptibility among carbapenem-resistant Enterobacterales.
    J Clin Microbiol. 2024 May 7:e0152023. doi: 10.1128/jcm.01520.
    PubMed     Abstract available


  269. FRANCO LC, Ahmed M, Kendra CG, Sperling RM, et al
    Validation of a qualitative real-time PCR assay for the detection of Candida auris in hospital inpatient screening.
    J Clin Microbiol. 2024 May 1:e0015824. doi: 10.1128/jcm.00158.
    PubMed     Abstract available


    April 2024
  270. MORENO A, Mah J, Budvytiene I, Ho DY, et al
    Dynamics and prognostic value of plasma cell-free DNA PCR in patients with invasive aspergillosis and mucormycosis.
    J Clin Microbiol. 2024 Apr 11:e0039424. doi: 10.1128/jcm.00394.
    PubMed     Abstract available


  271. STREVA VA, Weinstein J, Jankowski-Romano C, Osakwe N, et al
    The Brief Case: Incidental finding of Brucella abortus bacteremia in a patient with urinary tract infection.
    J Clin Microbiol. 2024;62:e0138123.
    PubMed    


  272. WEEBER P, Singh N, Lapierre P, Mingle L, et al
    A novel hybridization capture method for direct whole genome sequencing of clinical specimens to inform Legionnaires' disease investigations.
    J Clin Microbiol. 2024;62:e0130523.
    PubMed     Abstract available


  273. ITO A, Ishida T, Tachibana H, Nakanishi Y, et al
    Identification rate of Legionella species in non-purulent sputum culture is comparable to that in purulent sputum culture in Legionella pneumonia.
    J Clin Microbiol. 2024;62:e0166523.
    PubMed     Abstract available


  274. GIFFEN SR, Stoeppler E, Elliott A, Miller MB, et al
    Evaluation of analyte-specific reagents for the direct detection of Pneumocystis jirovecii.
    J Clin Microbiol. 2024;62:e0004524.
    PubMed     Abstract available


  275. GHANEM-ZOUBI N, Mustafa-Hellou M, Zahran M, Gazit L, et al
    The integration of Coxiella burnetii PCR testing in serum into the diagnostic algorithm of suspected acute Q fever in an endemic setting.
    J Clin Microbiol. 2024;62:e0170323.
    PubMed     Abstract available


  276. WALSH TJ, Mencacci A, Paggi R, Douka E, et al
    Prospective observational pilot study of the T2Resistance panel in the T2Dx system for detection of resistance genes in bacterial bloodstream infections.
    J Clin Microbiol. 2024;62:e0129623.
    PubMed     Abstract available


  277. PENG Y, Williams MM, Xiaoli L, Simon A, et al
    Strengthening Bordetella pertussis genomic surveillance by direct sequencing of residual positive specimens.
    J Clin Microbiol. 2024;62:e0165323.
    PubMed     Abstract available


  278. MCELVANIA E, Mindel S, Lemstra J, Brands K, et al
    Automated detection of methicillin-resistant Staphylococcus aureus with the MRSA CHROM imaging application on BD Kiestra Total Lab Automation System.
    J Clin Microbiol. 2024 Apr 1:e0144523. doi: 10.1128/jcm.01445.
    PubMed     Abstract available


    March 2024
  279. SIOPI M, Pachoulis I, Leventaki S, Spruijtenburg B, et al
    Evaluation of the Vitek 2 system for antifungal susceptibility testing of Candida auris using a representative international panel of clinical isolates: overestimation of amphotericin B resistance and underestimation of fluconazole resistance.
    J Clin Microbiol. 2024 Mar 19:e0152823. doi: 10.1128/jcm.01528.
    PubMed     Abstract available


  280. WOOD RC, Luabeya AK, Dragovich RB, Olson AM, et al
    Diagnostic accuracy of tongue swab testing on two automated tuberculosis diagnostic platforms, Cepheid Xpert MTB/RIF Ultra and Molbio Truenat MTB Ultima.
    J Clin Microbiol. 2024 Mar 14:e0001924. doi: 10.1128/jcm.00019.
    PubMed     Abstract available


  281. GIFFEN SR, Alby K
    The Brief Case: A case of bloodstream infection with Corynebacterium kroppenstedtii in an infant.
    J Clin Microbiol. 2024;62:e0082023.
    PubMed    


  282. WENGENACK NL, Brown-Elliott BA, Parrish NM, Salfinger M, et al
    This is giving me a complex: a practical attempt to streamline nontuberculous mycobacteria nomenclature for clinical purposes.
    J Clin Microbiol. 2024;62:e0153123.
    PubMed    


  283. CALDWELL M, Tisdale J, Khare R
    Improved recovery of nontuberculous mycobacteria in culture with adjunctive use of a selective agar.
    J Clin Microbiol. 2024;62:e0167823.
    PubMed    


  284. PEIRANO G, Castellanos LR, Matsumura Y, Chaffee R, et al
    Clinical validation of loop-mediated isothermal amplification for the detection of Escherichia coli sequence type complex 131.
    J Clin Microbiol. 2024;62:e0168723.
    PubMed     Abstract available


  285. LUUKINEN B, Antikainen J, Aittoniemi J, Miikkulainen-Lahti T, et al
    Evaluation of the FluoroType Mycobacteria assay for identification of mycobacteria.
    J Clin Microbiol. 2024;62:e0105423.
    PubMed     Abstract available


  286. RANGANATH N, Mendoza MA, Stevens R, Kind D, et al
    Rhodococcus infection: a 10-year retrospective analysis of clinical experience and antimicrobial susceptibility profile.
    J Clin Microbiol. 2024;62:e0153723.
    PubMed     Abstract available


  287. VINAYARAJ EV, Thakur CK, Negi P, Sreenath K, et al
    Epidemiological, clinical, and laboratory characteristics of human granulocytic anaplasmosis in North India.
    J Clin Microbiol. 2024;62:e0104823.
    PubMed     Abstract available


  288. IYER V, Castro D, Malla B, Panda B, et al
    Culture-independent identification of bloodstream infections from whole blood: prospective evaluation in specimens of known infection status.
    J Clin Microbiol. 2024;62:e0149823.
    PubMed     Abstract available


  289. DESRUISSEAUX C, Broderick C, Lavergne V, Sy K, et al
    Retrospective validation of MetaSystems' deep-learning-based digital microscopy platform with assistance compared to manual fluorescence microscopy for detection of mycobacteria.
    J Clin Microbiol. 2024;62:e0106923.
    PubMed     Abstract available


  290. TRAM TTB, Trieu LPT, Nhat LTH, Thu DDA, et al
    Targeted sequencing from cerebrospinal fluid for rapid identification of drug-resistant tuberculous meningitis.
    J Clin Microbiol. 2024 Mar 11:e0128723. doi: 10.1128/jcm.01287.
    PubMed     Abstract available


Thank you for your interest in scientific medicine.


AMEDEO Bacterial Infections and Mycoses is free of charge.

Privacy / Datenschutzerklärung | Imprint / Impressum