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  Genetics

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Articles published in Proc Natl Acad Sci U S A

Retrieve available abstracts of 181 articles:
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Single Articles


    October 2025
  1. PENG Z, Fan J, Liu Y, Jia Q, et al
    Uncovering cargo clients and accessory factors of AP-1 and AP-4 through vesicle proteomics.
    Proc Natl Acad Sci U S A. 2025;122:e2508961122.
    PubMed     Abstract available


    September 2025
  2. LANGLOIS RA, Casanova JL
    The potential impacts of human genetics on virus emergence.
    Proc Natl Acad Sci U S A. 2025;122:e2504318122.
    PubMed     Abstract available


  3. PELOSI JA, Davenport R, Kuo LY, Gray LN, et al
    The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant.
    Proc Natl Acad Sci U S A. 2025;122:e2504773122.
    PubMed     Abstract available


  4. SNOW M, Searcy MT, Summers R, Blohm T, et al
    A reanalysis of population dynamics in the Casas Grandes region of Northern Mexico using mitochondrial DNA.
    Proc Natl Acad Sci U S A. 2025;122:e2506162122.
    PubMed     Abstract available


  5. BENTLEY K, Statkute E, Murrell I, Fielding CA, et al
    Virion proteomics of genetically intact HCMV reveals a regulator of envelope glycoprotein composition that protects against humoral immunity.
    Proc Natl Acad Sci U S A. 2025;122:e2425622122.
    PubMed     Abstract available


    August 2025
  6. XIE T, Lin D, Cai XD, Ma LJ, et al
    Nano-biochar regulates phage-host interactions, reducing antibiotic resistance genes in vermicomposting systems.
    Proc Natl Acad Sci U S A. 2025;122:e2511986122.
    PubMed     Abstract available


  7. IZQUIERDO-ARANEGA G, Cuevas-Caballe C, Giannelli F, Paris JR, et al
    Pervasive and recurrent hybridization prevents inbreeding in Europe's most threatened seabird.
    Proc Natl Acad Sci U S A. 2025;122:e2427223122.
    PubMed     Abstract available


  8. GUJRAL O, Bafna M, Alm E, Berger B, et al
    Sparse autoencoders uncover biologically interpretable features in protein language model representations.
    Proc Natl Acad Sci U S A. 2025;122:e2506316122.
    PubMed     Abstract available


  9. LYU L, Gill M, Stott G, Subedi S, et al
    Tracing SARS-CoV-2 clusters across local scales using genomic data.
    Proc Natl Acad Sci U S A. 2025;122:e2501435122.
    PubMed     Abstract available


  10. ZHOU N, Zhang Y, Chen PR, Fan X, et al
    Time-resolved photocatalytic proximity labeling uncovers ER proteome dynamics underlying UPR-to-apoptosis transition.
    Proc Natl Acad Sci U S A. 2025;122:e2503115122.
    PubMed     Abstract available


  11. WANG H, Nielsen J, Zhou YJ, Lu H, et al
    Yeast adapts to diverse ecological niches driven by genomics and metabolic reprogramming.
    Proc Natl Acad Sci U S A. 2025;122:e2502044122.
    PubMed     Abstract available


  12. LASO-JADART R, Corrigan SL, Yang L, Lee SH, et al
    A genomic test of sex-biased dispersal in white sharks.
    Proc Natl Acad Sci U S A. 2025;122:e2507931122.
    PubMed     Abstract available


  13. VAN DER HEIJDEN ESM, Nasvall K, Seixas FA, Beserra Nobre CE, et al
    Genomics of Neotropical biodiversity indicators: Two butterfly radiations with rampant chromosomal rearrangements and hybridization.
    Proc Natl Acad Sci U S A. 2025;122:e2410939122.
    PubMed     Abstract available


  14. LEWANSKI AL, Linderoth T, Thompson G, Tringali A, et al
    Translocations contribute to population rescue in an imperiled woodpecker.
    Proc Natl Acad Sci U S A. 2025;122:e2410946122.
    PubMed     Abstract available


  15. MUIRHEAD CA, Marti E, Shogren EH, Uy JAC, et al
    Genomic origins and evolution of neo-sex chromosomes in Pacific Island birds.
    Proc Natl Acad Sci U S A. 2025;122:e2503746122.
    PubMed     Abstract available


    July 2025
  16. LIU Y, Sarker AHMR, Sripa B, Tangkawattana S, et al
    A population genetic analysis of the nematode Strongyloides stercoralis in Asia shows that human infection is not a zoonosis from dogs.
    Proc Natl Acad Sci U S A. 2025;122:e2424630122.
    PubMed     Abstract available


  17. PEHIM LIMBU S, Sturmer SL, Zahn G, Aguilar-Trigueros CA, et al
    Climate-linked biogeography of mycorrhizal fungal spore traits.
    Proc Natl Acad Sci U S A. 2025;122:e2505059122.
    PubMed     Abstract available


  18. VASUDEVAN HN, Arang N, Sacconi Nunez M, Kennedy P, et al
    A transcriptomic, proteomic, and functional genetic atlas dissects neurofibromin function in the peripheral nervous system.
    Proc Natl Acad Sci U S A. 2025;122:e2506823122.
    PubMed     Abstract available


  19. JIANG Y, Liu Q, Stridh P, Kockum I, et al
    Multiomics integration prioritizes potential drug targets for multiple sclerosis.
    Proc Natl Acad Sci U S A. 2025;122:e2425537122.
    PubMed     Abstract available


  20. DELLICOUR S, Gambaro F, Jacquot M, Lequime S, et al
    Comparative performance of viral landscape phylogeography approaches.
    Proc Natl Acad Sci U S A. 2025;122:e2506743122.
    PubMed     Abstract available


  21. SLAVOV GT, Macaya-Sanz D, DiFazio SP, Howe GT, et al
    Population structure limits the use of genomic data for predicting phenotypes and managing genetic resources in forest trees.
    Proc Natl Acad Sci U S A. 2025;122:e2425691122.
    PubMed     Abstract available


  22. ANINTA SG, Drinkwater R, Carmagnini A, Deere NJ, et al
    The importance of small-island populations for the long-term survival of endangered large-bodied insular mammals.
    Proc Natl Acad Sci U S A. 2025;122:e2422690122.
    PubMed     Abstract available


    June 2025
  23. ZENG W, Guo H, Liu Q, Wong WH, et al
    Improving polygenic prediction from whole-genome sequencing data by leveraging predicted epigenomic features.
    Proc Natl Acad Sci U S A. 2025;122:e2419202122.
    PubMed     Abstract available


  24. GORELIK A, Paulo JA, Schroeter CB, Lad M, et al
    CRISPR screens and quantitative proteomics reveal remodeling of the aryl hydrocarbon receptor-driven proteome through PARP7 activity.
    Proc Natl Acad Sci U S A. 2025;122:e2424985122.
    PubMed     Abstract available


  25. KUO CL, Liu P, Drouard G, Vuoksimaa E, et al
    A proteomic signature of healthspan.
    Proc Natl Acad Sci U S A. 2025;122:e2414086122.
    PubMed     Abstract available


  26. STEINER MC, Rice DP, Biddanda A, Ianni-Ravn MK, et al
    Study design and the sampling of deleterious rare variants in biobank-scale datasets.
    Proc Natl Acad Sci U S A. 2025;122:e2425196122.
    PubMed     Abstract available


  27. ALVERSON AJ, Roberts WR, Ruck EC, Nakov T, et al
    Phylogenomics reveals the slow-burning fuse of diatom evolution.
    Proc Natl Acad Sci U S A. 2025;122:e2500153122.
    PubMed     Abstract available


    May 2025
  28. YAMASHITA H, Matsumoto T, Kawashima K, Abdulla Daanaa HS, et al
    Dinucleotide preferences underlie apparent codon preference reversals in the Drosophila melanogaster lineage.
    Proc Natl Acad Sci U S A. 2025;122:e2419696122.
    PubMed     Abstract available


  29. MARTIS S, Schwab DJ, GrandPre T
    Trait-space patterning is dictated by the tempo and mode of mutation.
    Proc Natl Acad Sci U S A. 2025;122:e2425607122.
    PubMed     Abstract available


  30. GUSTAVSON DE, Borriello GA, Karhadkar MA, Rhee SH, et al
    Stability of general cognitive ability from infancy to adulthood: A combined twin and genomic investigation.
    Proc Natl Acad Sci U S A. 2025;122:e2426531122.
    PubMed     Abstract available


  31. PEEK J, Bhattacharjee A, Burian J, Hsieh DC, et al
    Environmental resistome-guided development of resistance-tolerant antibiotics.
    Proc Natl Acad Sci U S A. 2025;122:e2504781122.
    PubMed     Abstract available


  32. FRITTS RK, Ebmeier CC, Copley SD
    Transcriptomic and proteomic ramifications of segmental amplification in Escherichia coli.
    Proc Natl Acad Sci U S A. 2025;122:e2422424122.
    PubMed     Abstract available


  33. GUPTA A, Mirarab S, Turakhia Y
    Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES.
    Proc Natl Acad Sci U S A. 2025;122:e2500553122.
    PubMed     Abstract available


  34. JO Y, Greene TT, Chiale C, Zhang K, et al
    Genomic analysis of progenitors in viral infection implicates glucocorticoids as suppressors of plasmacytoid dendritic cell generation.
    Proc Natl Acad Sci U S A. 2025;122:e2410092122.
    PubMed     Abstract available


    April 2025
  35. ROSENTHAL JS, Zhang D, Yin J, Long C, et al
    Molecular organization of central cholinergic synapses.
    Proc Natl Acad Sci U S A. 2025;122:e2422173122.
    PubMed     Abstract available


  36. MCDONALD EF, Kim M, Olson JA 3rd, Meiler J, et al
    Proteostasis landscapes of cystic fibrosis variants reveal drug response vulnerability.
    Proc Natl Acad Sci U S A. 2025;122:e2418407122.
    PubMed     Abstract available


  37. HUANG YH, Belk JA, Zhang R, Weiser NE, et al
    Unified molecular approach for spatial epigenome, transcriptome, and cell lineages.
    Proc Natl Acad Sci U S A. 2025;122:e2424070122.
    PubMed     Abstract available


  38. ZHAO X, Liu Y, Yuan B, Cao Z, et al
    Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps.
    Proc Natl Acad Sci U S A. 2025;122:e2422292122.
    PubMed     Abstract available


  39. SIERANT MC, Jin SC, Bilguvar K, Morton SU, et al
    Genomic analysis of 11,555 probands identifies 60 dominant congenital heart disease genes.
    Proc Natl Acad Sci U S A. 2025;122:e2420343122.
    PubMed     Abstract available


    March 2025
  40. BLUMSTEIN M, Webster S, Hopkins R, Basler D, et al
    Genomics highlight an underestimation of phenology sensitivity to the urban heat island effect.
    Proc Natl Acad Sci U S A. 2025;122:e2408564122.
    PubMed     Abstract available


  41. HU Z, Baer A, Hering L, de Sena Oliveira I, et al
    Conserved leucine-rich repeat proteins in the adhesive projectile slime of velvet worms.
    Proc Natl Acad Sci U S A. 2025;122:e2416282122.
    PubMed     Abstract available


  42. ERVEN JAM, Mattiangeli V, Dreshaj M, Mullin VE, et al
    Archaeogenomic insights into commensalism and regional variation in pig management in Neolithic northwest Europe.
    Proc Natl Acad Sci U S A. 2025;122:e2410235122.
    PubMed     Abstract available


  43. HART R, Moran NA, Ochman H
    Genomic divergence across the tree of life.
    Proc Natl Acad Sci U S A. 2025;122:e2319389122.
    PubMed     Abstract available


  44. DICKMANDER RJ, Lenarcic EM, Sears JD, Hale AE, et al
    RNA-targeted proteomics identifies YBX1 as critical for efficient HCMV mRNA translation.
    Proc Natl Acad Sci U S A. 2025;122:e2421155122.
    PubMed     Abstract available


    February 2025
  45. PENG Y, Wang Y, Liu Y, Fang X, et al
    The genomic and epigenomic landscapes of hemizygous genes across crops with contrasting reproductive systems.
    Proc Natl Acad Sci U S A. 2025;122:e2422487122.
    PubMed     Abstract available


    January 2025
  46. NI B, Xiao L, Lin D, Zhang TL, et al
    Increasing pesticide diversity impairs soil microbial functions.
    Proc Natl Acad Sci U S A. 2025;122:e2419917122.
    PubMed     Abstract available


    December 2024
  47. RUPERTI F, Dzieciatkowska M, Pankey MS, Asensio CS, et al
    Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals.
    Proc Natl Acad Sci U S A. 2024;121:e2409125121.
    PubMed     Abstract available


  48. PURNOMO GA, Kealy S, O'Connor S, Schapper A, et al
    The genetic origins and impacts of historical Papuan migrations into Wallacea.
    Proc Natl Acad Sci U S A. 2024;121:e2412355121.
    PubMed     Abstract available


  49. SRINIVAS P, Peterson SB, Gallagher LA, Wang Y, et al
    Beyond genomics in Patescibacteria: A trove of unexplored biology packed into ultrasmall bacteria.
    Proc Natl Acad Sci U S A. 2024;121:e2419369121.
    PubMed     Abstract available


  50. PRADA F, Haramaty L, Livnah O, Shaul R, et al
    Proteomic characterization of a foraminiferal test's organic matrix.
    Proc Natl Acad Sci U S A. 2024;121:e2417845121.
    PubMed     Abstract available


  51. PADHI C, Field CM, Forneris CC, Olszewski D, et al
    Metagenomic study of lake microbial mats reveals protease-inhibiting antiviral peptides from a core microbiome member.
    Proc Natl Acad Sci U S A. 2024;121:e2409026121.
    PubMed     Abstract available


    November 2024
  52. WAKANO JY, Aoki K
    Forward and backward modeling of cultural evolutionary processes.
    Proc Natl Acad Sci U S A. 2024;121:e2322880121.
    PubMed     Abstract available


  53. STONE L, Lurquin PF
    A tale of two cultures: How L. Luca Cavalli-Sforza bridged the gap between science and the humanities.
    Proc Natl Acad Sci U S A. 2024;121:e2322878121.
    PubMed     Abstract available


  54. ARMSTRONG CG, Clemente-Carvalho RBG, Turner NJ, Wickham S, et al
    Genetic differentiation and precolonial Indigenous cultivation of hazelnut (Corylus cornuta, Betulaceae) in Western North America.
    Proc Natl Acad Sci U S A. 2024;121:e2402304121.
    PubMed     Abstract available


  55. HILLIS AL, Tamir T, Perry GE, Asara JM, et al
    Parallel phosphoproteomics and metabolomics map the global metabolic tyrosine phosphoproteome.
    Proc Natl Acad Sci U S A. 2024;121:e2413837121.
    PubMed     Abstract available


  56. HOU C, Deng J, Wu C, Zhang J, et al
    Ultradeep O-GlcNAc proteomics reveals widespread O-GlcNAcylation on tyrosine residues of proteins.
    Proc Natl Acad Sci U S A. 2024;121:e2409501121.
    PubMed     Abstract available


  57. BASTIDE P, Rocu P, Wirtz J, Hassler GW, et al
    Modeling the velocity of evolving lineages and predicting dispersal patterns.
    Proc Natl Acad Sci U S A. 2024;121:e2411582121.
    PubMed     Abstract available


  58. LIPMAN DJ, Cherry JL, Strain E, Agarwala R, et al
    Genomic perspectives on foodborne illness.
    Proc Natl Acad Sci U S A. 2024;121:e2411894121.
    PubMed     Abstract available


  59. WHEELER HB, Madrigal AA, Chaim IA
    Mapping the future of oxidative RNA damage in neurodegeneration: Rethinking the status quo with new tools.
    Proc Natl Acad Sci U S A. 2024;121:e2317860121.
    PubMed     Abstract available


    October 2024
  60. CHOY MS, Nguyen HT, Kumar GS, Peti W, et al
    A protein phosphatase 1 specific phosphatase targeting peptide (PhosTAP) to identify the PP1 phosphatome.
    Proc Natl Acad Sci U S A. 2024;121:e2415383121.
    PubMed     Abstract available


  61. LIANG K, Zhou L, Lei Q, Ruan T, et al
    Deep silicification-assisted long-term preservation of structural and genomic information across biospecies: From micro to macro.
    Proc Natl Acad Sci U S A. 2024;121:e2408273121.
    PubMed     Abstract available


  62. GAO J, Yang J, Dong H, Tao S, et al
    The origin of methyl group in methanogen-mediated mercury methylation: From the Wolfe cycle.
    Proc Natl Acad Sci U S A. 2024;121:e2416761121.
    PubMed     Abstract available


  63. BONNET T
    Joining forces to push past paradoxes: Combining quantitative genetics and genomics shows evolution hiding in plain sight.
    Proc Natl Acad Sci U S A. 2024;121:e2417220121.
    PubMed    


  64. RYCROFT JA, Giorgio RT, Sargen M, Helaine S, et al
    Tracking the progeny of bacterial persisters using a CRISPR-based genomic recorder.
    Proc Natl Acad Sci U S A. 2024;121:e2405983121.
    PubMed     Abstract available


  65. KOSTER AK, Yarishkin O, Dubin AE, Kefauver JM, et al
    Chemical mapping of the surface interactome of PIEZO1 identifies CADM1 as a modulator of channel inactivation.
    Proc Natl Acad Sci U S A. 2024;121:e2415934121.
    PubMed     Abstract available


  66. WANG Z, Yu H, Bao W, Qu M, et al
    Proteomic and phosphoproteomic landscape of localized prostate cancer unveils distinct molecular subtypes and insights into precision therapeutics.
    Proc Natl Acad Sci U S A. 2024;121:e2402741121.
    PubMed     Abstract available


    September 2024
  67. ARMSTRONG EE, Mooney JA, Solari KA, Kim BY, et al
    Unraveling the genomic diversity and admixture history of captive tigers in the United States.
    Proc Natl Acad Sci U S A. 2024;121:e2402924121.
    PubMed     Abstract available


  68. CLARAMUNT S, Braun EL, Cracraft J, Fjeldsa J, et al
    Calibrating the genomic clock of modern birds using fossils.
    Proc Natl Acad Sci U S A. 2024;121:e2405887121.
    PubMed    


  69. SHUVAEV S, Lachi D, Koulakov A, Zador A, et al
    Encoding innate ability through a genomic bottleneck.
    Proc Natl Acad Sci U S A. 2024;121:e2409160121.
    PubMed     Abstract available


  70. TAIRA M, Ozato K, Harland RM, Moody SA, et al
    Igor B. Dawid (1935-2024): A pioneer of developmental and molecular biology.
    Proc Natl Acad Sci U S A. 2024;121:e2414869121.
    PubMed    


  71. DU JH, Chen T, Gao M, Wang J, et al
    Joint trajectory inference for single-cell genomics using deep learning with a mixture prior.
    Proc Natl Acad Sci U S A. 2024;121:e2316256121.
    PubMed     Abstract available


  72. CAHILL R, Wang Y, Xian RP, Lee AJ, et al
    Unsupervised pattern identification in spatial gene expression atlas reveals mouse brain regions beyond established ontology.
    Proc Natl Acad Sci U S A. 2024;121:e2319804121.
    PubMed     Abstract available


  73. BADONI S, Pasion-Uy EA, Kor S, Kim SR, et al
    Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content.
    Proc Natl Acad Sci U S A. 2024;121:e2410598121.
    PubMed     Abstract available


  74. LAN T, Yang S, Li H, Zhang Y, et al
    Large-scale genome sequencing of giant pandas improves the understanding of population structure and future conservation initiatives.
    Proc Natl Acad Sci U S A. 2024;121:e2406343121.
    PubMed     Abstract available


    August 2024
  75. NUNEZ JG, Paulose J, Mobius W, Beller DA, et al
    Range expansions across landscapes with quenched noise.
    Proc Natl Acad Sci U S A. 2024;121:e2411487121.
    PubMed     Abstract available


  76. RATH SP, Gupta R, Todres E, Wang H, et al
    Mitochondrial genome copy number variation across tissues in mice and humans.
    Proc Natl Acad Sci U S A. 2024;121:e2402291121.
    PubMed     Abstract available


    July 2024
  77. CHEN L, Chen A, Zhang XD, Saenz Robles MT, et al
    Targeted whole-genome recovery of single viral species in a complex environmental sample.
    Proc Natl Acad Sci U S A. 2024;121:e2404727121.
    PubMed     Abstract available


  78. SOUILMI Y, Wasef S, Williams MP, Conroy G, et al
    Ancient genomes reveal over two thousand years of dingo population structure.
    Proc Natl Acad Sci U S A. 2024;121:e2407584121.
    PubMed     Abstract available


  79. BORTEL P, Hagn G, Skos L, Bileck A, et al
    Memory effects of prior subculture may impact the quality of multiomic perturbation profiles.
    Proc Natl Acad Sci U S A. 2024;121:e2313851121.
    PubMed     Abstract available


  80. PETROS BA
    Identifying changes in viral fitness using population genetic structure.
    Proc Natl Acad Sci U S A. 2024;121:e2410274121.
    PubMed    


  81. LYNCH M, Wei W, Ye Z, Pfrender M, et al
    The genome-wide signature of short-term temporal selection.
    Proc Natl Acad Sci U S A. 2024;121:e2307107121.
    PubMed     Abstract available


  82. TRUMPFF C, Monzel AS, Sandi C, Menon V, et al
    Psychosocial experiences are associated with human brain mitochondrial biology.
    Proc Natl Acad Sci U S A. 2024;121:e2317673121.
    PubMed     Abstract available


  83. SASSO S, Saag L, Spros R, Beneker O, et al
    Capturing the fusion of two ancestries and kinship structures in Merovingian Flanders.
    Proc Natl Acad Sci U S A. 2024;121:e2406734121.
    PubMed     Abstract available


    June 2024
  84. SLEDZIESKI S, Kshirsagar M, Baek M, Dodhia R, et al
    Democratizing protein language models with parameter-efficient fine-tuning.
    Proc Natl Acad Sci U S A. 2024;121:e2405840121.
    PubMed     Abstract available


  85. NAM C, Li LY, Yang Q, Ziman B, et al
    A druggable cascade links methionine metabolism to epigenomic reprogramming in squamous cell carcinoma.
    Proc Natl Acad Sci U S A. 2024;121:e2320835121.
    PubMed     Abstract available


  86. YERMAKOVICH D, Andre M, Brucato N, Kariwiga J, et al
    Denisovan admixture facilitated environmental adaptation in Papua New Guinean populations.
    Proc Natl Acad Sci U S A. 2024;121:e2405889121.
    PubMed     Abstract available


  87. DONKER T, Papathanassopoulos A, Ghosh H, Kociurzynski R, et al
    Estimation of SARS-CoV-2 fitness gains from genomic surveillance data without prior lineage classification.
    Proc Natl Acad Sci U S A. 2024;121:e2314262121.
    PubMed     Abstract available


  88. TAN CH, Wang TY, Park H, Lomenick B, et al
    Single-tissue proteomics in Caenorhabditis elegans reveals proteins resident in intestinal lysosome-related organelles.
    Proc Natl Acad Sci U S A. 2024;121:e2322588121.
    PubMed     Abstract available


    May 2024
  89. HUANG S, Ran Q, Li XM, Bao X, et al
    MACSPI enables tissue-selective proteomic and interactomic analyses in multicellular organisms.
    Proc Natl Acad Sci U S A. 2024;121:e2319060121.
    PubMed     Abstract available


  90. TEYSSONNIERE EM, Trebulle P, Muenzner J, Loegler V, et al
    Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast.
    Proc Natl Acad Sci U S A. 2024;121:e2319211121.
    PubMed     Abstract available


  91. LAVANCHY E, Weir BS, Goudet J
    Detecting inbreeding depression in structured populations.
    Proc Natl Acad Sci U S A. 2024;121:e2315780121.
    PubMed     Abstract available


  92. KOBAYASHI D, Inoue Y, Suzuki R, Matsuda M, et al
    Identification and epidemiological study of an uncultured flavivirus from ticks using viral metagenomics and pseudoinfectious viral particles.
    Proc Natl Acad Sci U S A. 2024;121:e2319400121.
    PubMed     Abstract available


    April 2024
  93. STRINGER EJ, Gruber B, Sarre SD, Wardle GM, et al
    Boom-bust population dynamics drive rapid genetic change.
    Proc Natl Acad Sci U S A. 2024;121:e2320590121.
    PubMed     Abstract available


  94. JUSTEN HC, Easton WE, Delmore KE
    Mapping seasonal migration in a songbird hybrid zone -- heritability, genetic correlations, and genomic patterns linked to speciation.
    Proc Natl Acad Sci U S A. 2024;121:e2313442121.
    PubMed     Abstract available


  95. ZHANG J, Cong Q, Shen J, Song L, et al
    What one genus of showy moths can say about migration, adaptation, and wing pattern.
    Proc Natl Acad Sci U S A. 2024;121:e2319726121.
    PubMed     Abstract available


  96. HOGAN MP, Holding ML, Nystrom GS, Colston TJ, et al
    The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom.
    Proc Natl Acad Sci U S A. 2024;121:e2313440121.
    PubMed     Abstract available


  97. SUN P, Lu Z, Wang Z, Wang S, et al
    Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family.
    Proc Natl Acad Sci U S A. 2024;121:e2313921121.
    PubMed     Abstract available


  98. BAHARAV TZ, Tse D, Salzman J
    OASIS: An interpretable, finite-sample valid alternative to Pearson's X(2) for scientific discovery.
    Proc Natl Acad Sci U S A. 2024;121:e2304671121.
    PubMed     Abstract available


  99. LONG BM, Matsuda Y, Moroney JV
    Algal chloroplast pyrenoids: Evidence for convergent evolution.
    Proc Natl Acad Sci U S A. 2024;121:e2402546121.
    PubMed    


    March 2024
  100. KEHLET-DELGADO H, Montoya AP, Jensen KT, Wendlandt CE, et al
    The evolutionary genomics of adaptation to stress in wild rhizobium bacteria.
    Proc Natl Acad Sci U S A. 2024;121:e2311127121.
    PubMed     Abstract available


  101. SHEINMAN M, Arndt PF, Massip F
    Modeling the mosaic structure of bacterial genomes to infer their evolutionary history.
    Proc Natl Acad Sci U S A. 2024;121:e2313367121.
    PubMed     Abstract available


  102. PEZZINI D, Taylor KL, Reisig DD, Fritz ML, et al
    Cross-pollination in seed-blended refuge and selection for Vip3A resistance in a lepidopteran pest as detected by genomic monitoring.
    Proc Natl Acad Sci U S A. 2024;121:e2319838121.
    PubMed     Abstract available


  103. SCHRAIBER JG, Edge MD
    Heritability within groups is uninformative about differences among groups: Cases from behavioral, evolutionary, and statistical genetics.
    Proc Natl Acad Sci U S A. 2024;121:e2319496121.
    PubMed     Abstract available


  104. GROH JS, Coop G
    The temporal and genomic scale of selection following hybridization.
    Proc Natl Acad Sci U S A. 2024;121:e2309168121.
    PubMed     Abstract available


  105. BORETTO M, Geurts MH, Gandhi S, Ma Z, et al
    Epidermal growth factor receptor (EGFR) is a target of the tumor-suppressor E3 ligase FBXW7.
    Proc Natl Acad Sci U S A. 2024;121:e2309902121.
    PubMed     Abstract available


  106. KRUEGER J, Preusse M, Oswaldo Gomez N, Frommeyer YN, et al
    tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa.
    Proc Natl Acad Sci U S A. 2024;121:e2312874121.
    PubMed     Abstract available


  107. SIMOES LG, Peyroteo-Stjerna R, Marchand G, Bernhardsson C, et al
    Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France.
    Proc Natl Acad Sci U S A. 2024;121:e2310545121.
    PubMed     Abstract available


  108. MOROMIZATO R, Fukuda K, Suzuki S, Motomura T, et al
    Pyrenoid proteomics reveals independent evolution of the CO(2)-concentrating organelle in chlorarachniophytes.
    Proc Natl Acad Sci U S A. 2024;121:e2318542121.
    PubMed     Abstract available


    February 2024
  109. KEROACK CD, Elsworth B, Tennessen JA, Paul AS, et al
    Comparative chemical genomics in Babesia species identifies the alkaline phosphatase PhoD as a determinant of antiparasitic resistance.
    Proc Natl Acad Sci U S A. 2024;121:e2312987121.
    PubMed     Abstract available


  110. LUKHTANOV VA
    Polytypic species concept and subspecies in the genomic era.
    Proc Natl Acad Sci U S A. 2024;121:e2317038121.
    PubMed    


  111. SIMON A, Coop G
    The contribution of gene flow, selection, and genetic drift to five thousand years of human allele frequency change.
    Proc Natl Acad Sci U S A. 2024;121:e2312377121.
    PubMed     Abstract available


  112. NOCH EK, Palma L, Yim I, Bullen N, et al
    Cysteine induces mitochondrial reductive stress in glioblastoma through hydrogen peroxide production.
    Proc Natl Acad Sci U S A. 2024;121:e2317343121.
    PubMed     Abstract available


  113. PHUNG TK, Berndsen K, Shastry R, Phan TLCHB, et al
    CURTAIN-A unique web-based tool for exploration and sharing of MS-based proteomics data.
    Proc Natl Acad Sci U S A. 2024;121:e2312676121.
    PubMed     Abstract available


  114. YI T, Wagner G
    Malignant tumor cells engender second membrane-lined organelles for self-protection and tumor progression.
    Proc Natl Acad Sci U S A. 2024;121:e2317141121.
    PubMed     Abstract available


  115. SPRINGSTEIN BL, Paulo JA, Park H, Henry K, et al
    Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics.
    Proc Natl Acad Sci U S A. 2024;121:e2317453121.
    PubMed     Abstract available


  116. BAXI AB, Li J, Quach VM, Pade LR, et al
    Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer.
    Proc Natl Acad Sci U S A. 2024;121:e2311625121.
    PubMed     Abstract available


    January 2024
  117. CAMACHO-MATEU J, Lampo A, Sireci M, Munoz MA, et al
    Sparse species interactions reproduce abundance correlation patterns in microbial communities.
    Proc Natl Acad Sci U S A. 2024;121:e2309575121.
    PubMed     Abstract available


  118. SUTTER PA, Willis CM, Menoret A, Nicaise AM, et al
    Astrocytic TIMP-1 regulates production of Anastellin, an inhibitor of oligodendrocyte differentiation and FTY720 responses.
    Proc Natl Acad Sci U S A. 2024;121:e2306816121.
    PubMed     Abstract available


  119. LI C, Wickell D, Kuo LY, Chen X, et al
    Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes.
    Proc Natl Acad Sci U S A. 2024;121:e2312607121.
    PubMed     Abstract available


  120. ZHANG Y, Zhang H, Wu Y
    A general approach for inferring the ancestry of recent ancestors of an admixed individual.
    Proc Natl Acad Sci U S A. 2024;121:e2316242120.
    PubMed     Abstract available


  121. YUAN J, Kitchener AC, Lackey LB, Sun T, et al
    The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids.
    Proc Natl Acad Sci U S A. 2024;121:e2310763120.
    PubMed     Abstract available


  122. VAUGHAN TG, Scire J, Nadeau SA, Stadler T, et al
    Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data.
    Proc Natl Acad Sci U S A. 2024;121:e2308125121.
    PubMed     Abstract available


    December 2023
  123. WEN J, Nasrallah IM, Abdulkadir A, Satterthwaite TD, et al
    Genomic loci influence patterns of structural covariance in the human brain.
    Proc Natl Acad Sci U S A. 2023;120:e2300842120.
    PubMed     Abstract available


  124. ZHU S, Liu J, Patel V, Zhao X, et al
    Antigen exposure reshapes chromatin architecture in central memory CD8(+) T cells and imprints enhanced recall capacity.
    Proc Natl Acad Sci U S A. 2023;120:e2313476120.
    PubMed     Abstract available


  125. SKAAR EP
    Biogeography of the genus Staphylococci on human skin.
    Proc Natl Acad Sci U S A. 2023;120:e2318509120.
    PubMed    


  126. ZHONG X, Moresco JJ, Diedrich JK, Pinto AM, et al
    Essential role of MFSD1-GLMP-GIMAP5 in lymphocyte survival and liver homeostasis.
    Proc Natl Acad Sci U S A. 2023;120:e2314429120.
    PubMed     Abstract available


  127. BLANCO-PASTOR JL
    Inclusion of highly admixed genotypes in grapevine genomic analyses leads to an equivocal reconstruction of its domestication history.
    Proc Natl Acad Sci U S A. 2023;120:e2310026120.
    PubMed    


  128. JIN L, Chen Y, Muzaffar S, Li C, et al
    Epigenetic switch reshapes epithelial progenitor cell signatures and drives inflammatory pathogenesis in hidradenitis suppurativa.
    Proc Natl Acad Sci U S A. 2023;120:e2315096120.
    PubMed     Abstract available


    November 2023
  129. ESPINOZA B, Adiga A, Venkatramanan S, Warren AS, et al
    Coupled models of genomic surveillance and evolving pandemics with applications for timely public health interventions.
    Proc Natl Acad Sci U S A. 2023;120:e2305227120.
    PubMed     Abstract available


  130. TORRES ROBLES J, Lou HJ, Shi G, Pan PL, et al
    Linear motif specificity in signaling through p38alpha and ERK2 mitogen-activated protein kinases.
    Proc Natl Acad Sci U S A. 2023;120:e2316599120.
    PubMed     Abstract available


  131. SIMMONS M, Horbelt N, Sverko T, Scoppola E, et al
    Invasive mussels fashion silk-like byssus via mechanical processing of massive horizontally acquired coiled coils.
    Proc Natl Acad Sci U S A. 2023;120:e2311901120.
    PubMed     Abstract available


  132. JOGLEKAR P, Conlan S, Lee-Lin SQ, Deming C, et al
    Integrated genomic and functional analyses of human skin-associated Staphylococcus reveal extensive inter- and intra-species diversity.
    Proc Natl Acad Sci U S A. 2023;120:e2310585120.
    PubMed     Abstract available


  133. HU W, Zhang R, Xu H, Li Y, et al
    CAMSAP1 role in orchestrating structure and dynamics of manchette microtubule minus-ends impacts male fertility during spermiogenesis.
    Proc Natl Acad Sci U S A. 2023;120:e2313787120.
    PubMed     Abstract available


    October 2023
  134. BENEGAS G, Batra SS, Song YS
    DNA language models are powerful predictors of genome-wide variant effects.
    Proc Natl Acad Sci U S A. 2023;120:e2311219120.
    PubMed     Abstract available


  135. CAO X, Kose C, Selby CP, Sancar A, et al
    In vitro DNA repair genomics using XR-seq with Escherichia coli and mammalian cell-free extracts.
    Proc Natl Acad Sci U S A. 2023;120:e2314233120.
    PubMed     Abstract available


  136. MATHUR S, Mason AJ, Bradburd GS, Gibbs HL, et al
    Functional genomic diversity is correlated with neutral genomic diversity in populations of an endangered rattlesnake.
    Proc Natl Acad Sci U S A. 2023;120:e2303043120.
    PubMed     Abstract available


  137. XIE Y, Ersan S, Guan X, Wang J, et al
    Unexpected metabolic rewiring of CO(2) fixation in H(2)-mediated materials-biology hybrids.
    Proc Natl Acad Sci U S A. 2023;120:e2308373120.
    PubMed     Abstract available


  138. LIAO SE, Sudarshan M, Regev O
    Deciphering RNA splicing logic with interpretable machine learning.
    Proc Natl Acad Sci U S A. 2023;120:e2221165120.
    PubMed     Abstract available


  139. DUFRESNES C, Poyarkov N, Jablonski D
    Acknowledging more biodiversity without more species.
    Proc Natl Acad Sci U S A. 2023;120:e2302424120.
    PubMed     Abstract available


  140. GU TT, Wu H, Yang F, Gaubert P, et al
    Genomic analysis reveals a cryptic pangolin species.
    Proc Natl Acad Sci U S A. 2023;120:e2304096120.
    PubMed     Abstract available


    September 2023
  141. ROTHMAN JE
    Starting at Go: Protein structure prediction succumbs to machine learning.
    Proc Natl Acad Sci U S A. 2023;120:e2311128120.
    PubMed     Abstract available


  142. MASON FM, Kounlavong ES, Tebeje AT, Dahiya R, et al
    SETD2 safeguards the genome against isochromosome formation.
    Proc Natl Acad Sci U S A. 2023;120:e2303752120.
    PubMed     Abstract available


  143. SIRECI M, Munoz MA, Grilli J
    Environmental fluctuations explain the universal decay of species-abundance correlations with phylogenetic distance.
    Proc Natl Acad Sci U S A. 2023;120:e2217144120.
    PubMed     Abstract available


  144. OH DH, Ma X, Hogg SJ, He J, et al
    Rationally designed chimeric PI3K-BET bromodomain inhibitors elicit curative responses in MYC-driven lymphoma.
    Proc Natl Acad Sci U S A. 2023;120:e2306414120.
    PubMed     Abstract available


  145. TAKAKURA M, Lam YH, Nakagawa R, Ng MY, et al
    Differential second messenger signaling via dopamine neurons bidirectionally regulates memory retention.
    Proc Natl Acad Sci U S A. 2023;120:e2304851120.
    PubMed     Abstract available


    August 2023
  146. TAN R, Hoare M, Welle KA, Swovick K, et al
    Folding stabilities of ribosome-bound nascent polypeptides probed by mass spectrometry.
    Proc Natl Acad Sci U S A. 2023;120:e2303167120.
    PubMed     Abstract available


  147. ZELLER MA, Ma J, Wong FY, Tum S, et al
    The genomic landscape of swine influenza A viruses in Southeast Asia.
    Proc Natl Acad Sci U S A. 2023;120:e2301926120.
    PubMed     Abstract available


  148. MANGIOLA S, Roth-Schulze AJ, Trussart M, Zozaya-Valdes E, et al
    sccomp: Robust differential composition and variability analysis for single-cell data.
    Proc Natl Acad Sci U S A. 2023;120:e2203828120.
    PubMed     Abstract available


  149. HUNG TH, So T, Thammavong B, Chamchumroon V, et al
    Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods.
    Proc Natl Acad Sci U S A. 2023;120:e2301603120.
    PubMed     Abstract available


  150. MEHROTRA T, Konar D, Pragasam AK, Kumar S, et al
    Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis.
    Proc Natl Acad Sci U S A. 2023;120:e2305465120.
    PubMed     Abstract available


  151. RUBINA A, Patel M, Nightingale K, Potts M, et al
    ADAM17 targeting by human cytomegalovirus remodels the cell surface proteome to simultaneously regulate multiple immune pathways.
    Proc Natl Acad Sci U S A. 2023;120:e2303155120.
    PubMed     Abstract available


  152. MALINVERNI D, Zamuner S, Rebeaud ME, Barducci A, et al
    Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins.
    Proc Natl Acad Sci U S A. 2023;120:e2218217120.
    PubMed     Abstract available


    July 2023
  153. FOKKENS L, Rep M
    Population genomics reveals meiotic recombination in Fusarium oxysporum.
    Proc Natl Acad Sci U S A. 2023;120:e2309677120.
    PubMed    


  154. DAVIDI L, Gallaher SD, Ben-David E, Purvine SO, et al
    Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management.
    Proc Natl Acad Sci U S A. 2023;120:e2305495120.
    PubMed     Abstract available


  155. CHARLES OJ, Venturini C, Gantt S, Atkinson C, et al
    Genomic and geographical structure of human cytomegalovirus.
    Proc Natl Acad Sci U S A. 2023;120:e2221797120.
    PubMed     Abstract available


  156. FUJIMURA T, Esteban R, Wickner RB
    Genomic fold of a "naked" ssRNA virus is critical for stability and propagation.
    Proc Natl Acad Sci U S A. 2023;120:e2309329120.
    PubMed    


  157. GU Z, Wang L, Dong Q, Xu K, et al
    Aberrant LYZ expression in tumor cells serves as the potential biomarker and target for HCC and promotes tumor progression via csGRP78.
    Proc Natl Acad Sci U S A. 2023;120:e2215744120.
    PubMed     Abstract available


  158. GARDNER EM, Bruun-Lund S, Niissalo M, Chantarasuwan B, et al
    Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs.
    Proc Natl Acad Sci U S A. 2023;120:e2222035120.
    PubMed     Abstract available


  159. VARGAS R JR, Luna MJ, Freschi L, Marin M, et al
    Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex.
    Proc Natl Acad Sci U S A. 2023;120:e2301394120.
    PubMed     Abstract available


  160. SARTORIO MG, Pardue EJ, Scott NE, Feldman MF, et al
    Human gut bacteria tailor extracellular vesicle cargo for the breakdown of diet- and host-derived glycans.
    Proc Natl Acad Sci U S A. 2023;120:e2306314120.
    PubMed     Abstract available


  161. FAYYAZ A, Robinson G, Chang PL, Bekele D, et al
    Hiding in plain sight: Genome-wide recombination and a dynamic accessory genome drive diversity in Fusarium oxysporum f.sp. ciceris.
    Proc Natl Acad Sci U S A. 2023;120:e2220570120.
    PubMed     Abstract available


    June 2023
  162. HASEGAWA N, Techer MA, Adjlane N, Al-Hissnawi MS, et al
    Evolutionarily diverse origins of deformed wing viruses in western honey bees.
    Proc Natl Acad Sci U S A. 2023;120:e2301258120.
    PubMed     Abstract available


  163. NOSIL P, Soria-Carrasco V, Villoutreix R, De-la-Mora M, et al
    Complex evolutionary processes maintain an ancient chromosomal inversion.
    Proc Natl Acad Sci U S A. 2023;120:e2300673120.
    PubMed     Abstract available


  164. HARRISON LB, Behr MA
    Mutation rates and the molecular epidemiology of Mycobacterium abscessus.
    Proc Natl Acad Sci U S A. 2023;120:e2307499120.
    PubMed    


  165. GOMEZ-BAENA G, Pounder KC, Halstead JO, Roberts SA, et al
    Unraveling female communication through scent marks in the Norway rat.
    Proc Natl Acad Sci U S A. 2023;120:e2300794120.
    PubMed     Abstract available


  166. KASUGA Y, Ouda R, Watanabe M, Sun X, et al
    FBXO11 constitutes a major negative regulator of MHC class II through ubiquitin-dependent proteasomal degradation of CIITA.
    Proc Natl Acad Sci U S A. 2023;120:e2218955120.
    PubMed     Abstract available


  167. XIAO H, Liu Z, Wang N, Long Q, et al
    Adaptive and maladaptive introgression in grapevine domestication.
    Proc Natl Acad Sci U S A. 2023;120:e2222041120.
    PubMed     Abstract available


  168. YOUNIS S, Jouneau A, Larsson M, Oudin JF, et al
    Ablation of ZC3H11A causes early embryonic lethality and dysregulation of metabolic processes.
    Proc Natl Acad Sci U S A. 2023;120:e2216799120.
    PubMed     Abstract available


    May 2023
  169. SHIRAKAWA KT, Sala FA, Miyachiro MM, Job V, et al
    Architecture and genomic arrangement of the MurE-MurF bacterial cell wall biosynthesis complex.
    Proc Natl Acad Sci U S A. 2023;120:e2219540120.
    PubMed     Abstract available


  170. GOYCHUK A, Kannan D, Chakraborty AK, Kardar M, et al
    Polymer folding through active processes recreates features of genome organization.
    Proc Natl Acad Sci U S A. 2023;120:e2221726120.
    PubMed     Abstract available


  171. MELBY JA, Brown KA, Gregorich ZR, Roberts DS, et al
    High sensitivity top-down proteomics captures single muscle cell heterogeneity in large proteoforms.
    Proc Natl Acad Sci U S A. 2023;120:e2222081120.
    PubMed     Abstract available


  172. REITZ CJ, Tavassoli M, Kim DH, Shah S, et al
    Proteomics and phosphoproteomics of failing human left ventricle identifies dilated cardiomyopathy-associated phosphorylation of CTNNA3.
    Proc Natl Acad Sci U S A. 2023;120:e2212118120.
    PubMed     Abstract available


  173. SEXTON DL, Hashimi A, Beskrovnaya P, Sibanda L, et al
    The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis.
    Proc Natl Acad Sci U S A. 2023;120:e2303275120.
    PubMed     Abstract available


    April 2023
  174. BARTOLEC TK, Vazquez-Campos X, Norman A, Luong C, et al
    Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein-protein interactions in the human cell.
    Proc Natl Acad Sci U S A. 2023;120:e2219418120.
    PubMed     Abstract available


  175. WANG YJ, Tain T, Yu JY, Li J, et al
    Genomic and structural basis for evolution of tropane alkaloid biosynthesis.
    Proc Natl Acad Sci U S A. 2023;120:e2302448120.
    PubMed     Abstract available


  176. LLEWELLYN J, Mallikarjun V, Appleton E, Osipova M, et al
    Loss of regulation of protein synthesis and turnover underpins an attenuated stress response in senescent human mesenchymal stem cells.
    Proc Natl Acad Sci U S A. 2023;120:e2210745120.
    PubMed     Abstract available


  177. GESESSE CA, Nigir B, de Sousa K, Gianfranceschi L, et al
    Genomics-driven breeding for local adaptation of durum wheat is enhanced by farmers' traditional knowledge.
    Proc Natl Acad Sci U S A. 2023;120:e2205774119.
    PubMed     Abstract available


  178. HUANG K, Jahani M, Gouzy J, Legendre A, et al
    The genomics of linkage drag in inbred lines of sunflower.
    Proc Natl Acad Sci U S A. 2023;120:e2205783119.
    PubMed     Abstract available


  179. SANCHEZ D, Sadoun SB, Mary-Huard T, Allier A, et al
    Improving the use of plant genetic resources to sustain breeding programs' efficiency.
    Proc Natl Acad Sci U S A. 2023;120:e2205780119.
    PubMed     Abstract available


    March 2023
  180. LATRILLE T, Rodrigue N, Lartillot N
    Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale.
    Proc Natl Acad Sci U S A. 2023;120:e2214977120.
    PubMed     Abstract available


    February 2023
  181. SCHMID C, Schiffels S
    Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data.
    Proc Natl Acad Sci U S A. 2023;120:e2218375120.
    PubMed     Abstract available


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