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COVID-19: Daily Top 10 Papers


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Articles published in PLoS One

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    January 2021
  1. BHOYAR RC, Jain A, Sehgal P, Divakar MK, et al
    High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing.
    PLoS One. 2021;16:e0247115.
    PubMed     Abstract available

  2. DADOUSIS C, Cecchi F, Ablondi M, Fabbri MC, et al
    Keep Garfagnina alive. An integrated study on patterns of homozygosity, genomic inbreeding, admixture and breed traceability of the Italian Garfagnina goat breed.
    PLoS One. 2021;16:e0232436.
    PubMed     Abstract available

  3. ZHANG ML, Wang LQ, Qi Y, Wu Y, et al
    Comparative genomic analysis of three geographical isolates from China reveals high genetic stability of Plutella xylostella granulovirus.
    PLoS One. 2021;16:e0243143.
    PubMed     Abstract available

  4. HAN M, Yan H, Yang K, Fan B, et al
    Identification of biomarkers and construction of a microRNAmRNA regulatory network for clear cell renal cell carcinoma using integrated bioinformatics analysis.
    PLoS One. 2021;16:e0244394.
    PubMed     Abstract available

  5. MI W, Liu Z, Jin J, Dong X, et al
    Comparative proteomics analysis reveals the molecular mechanism of enhanced cold tolerance through ROS scavenging in winter rapeseed (Brassica napus L.).
    PLoS One. 2021;16:e0243292.
    PubMed     Abstract available

  6. EPELBOIN Y, Wang L, Giai Gianetto Q, Choumet V, et al
    CYP450 core involvement in multiple resistance strains of Aedes aegypti from French Guiana highlighted by proteomics, molecular and biochemical studies.
    PLoS One. 2021;16:e0243992.
    PubMed     Abstract available

  7. MAROSO F, Gkagkavouzis K, De Innocentiis S, Hillen J, et al
    Genome-wide analysis clarifies the population genetic structure of wild gilthead sea bream (Sparus aurata).
    PLoS One. 2021;16:e0236230.
    PubMed     Abstract available

  8. TAMAR K, Els J, Kornilios P, Soorae P, et al
    The demise of a wonder: Evolutionary history and conservation assessments of the Wonder Gecko Teratoscincus keyserlingii (Gekkota, Sphaerodactylidae) in Arabia.
    PLoS One. 2021;16:e0244150.
    PubMed     Abstract available

  9. MORIBE F, Nishikori M, Takashima T, Taniyama D, et al
    Epigenetic suppression of SLFN11 in germinal center B-cells during B-cell development.
    PLoS One. 2021;16:e0237554.
    PubMed     Abstract available

  10. SCIABOLA S, Xi H, Cruz D, Cao Q, et al
    PFRED: A computational platform for siRNA and antisense oligonucleotides design.
    PLoS One. 2021;16:e0238753.
    PubMed     Abstract available

  11. GUEVARRA RB, Magez S, Peeters E, Chung MS, et al
    Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen.
    PLoS One. 2021;16:e0239792.
    PubMed     Abstract available

  12. EGFJORD AF, Margaryan A, Fischer A, Sjogren KG, et al
    Genomic Steppe ancestry in skeletons from the Neolithic Single Grave Culture in Denmark.
    PLoS One. 2021;16:e0244872.
    PubMed     Abstract available

  13. MACHER JN, Prazeres M, Taudien S, Jompa J, et al
    Integrating morphology and metagenomics to understand taxonomic variability of Amphisorus (Foraminifera, Miliolida) from Western Australia and Indonesia.
    PLoS One. 2021;16:e0244616.
    PubMed     Abstract available

  14. COELHO AC, Pires R, Schutz G, Santa C, et al
    Disclosing proteins in the leaves of cork oak plants associated with the immune response to Phytophthora cinnamomi inoculation in the roots: A long-term proteomics approach.
    PLoS One. 2021;16:e0245148.
    PubMed     Abstract available

  15. SOUTO BM, de Araujo ACB, Hamann PRV, Bastos AR, et al
    Functional screening of a Caatinga goat (Capra hircus) rumen metagenomic library reveals a novel GH3 beta-xylosidase.
    PLoS One. 2021;16:e0245118.
    PubMed     Abstract available

  16. MAGUIRE M, Kase JA, Roberson D, Muruvanda T, et al
    Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water.
    PLoS One. 2021;16:e0245172.
    PubMed     Abstract available

  17. ELMASSRY MM, Kim S, Busby B
    Predicting drug-metagenome interactions: Variation in the microbial beta-glucuronidase level in the human gut metagenomes.
    PLoS One. 2021;16:e0244876.
    PubMed     Abstract available

  18. MUTURI SM, Muthui LW, Njogu PM, Onguso JM, et al
    Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya.
    PLoS One. 2021;16:e0244755.
    PubMed     Abstract available

  19. MADDUPPA H, Martaulina R, Zairion Z, Renjani RM, et al
    Genetic population subdivision of the blue swimming crab (Portunus pelagicus) across Indonesia inferred from mitochondrial DNA: Implication to sustainable fishery.
    PLoS One. 2021;16:e0240951.
    PubMed     Abstract available

  20. FAZZI-GOMES P, Aguiar J, Cabral GF, Marques D, et al
    Genomic approach for conservation and the sustainable management of endangered species of the Amazon.
    PLoS One. 2021;16:e0240002.
    PubMed     Abstract available

  21. BARRETT DE, Bartholomew JL
    A tale of two fish: Comparative transcriptomics of resistant and susceptible steelhead following exposure to Ceratonova shasta highlights differences in parasite recognition.
    PLoS One. 2021;16:e0234837.
    PubMed     Abstract available

  22. HARDMEIER I, Aeberhard N, Qi W, Schoenbaechler K, et al
    Metagenomic analysis of fecal and tissue samples from 18 endemic bat species in Switzerland revealed a diverse virus composition including potentially zoonotic viruses.
    PLoS One. 2021;16:e0252534.
    PubMed     Abstract available

  23. SEYYEDSALEHI SF, Soleymani M, Rabiee HR, Mofrad MRK, et al
    PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks.
    PLoS One. 2021;16:e0244430.
    PubMed     Abstract available

  24. RICHTER J, Fanis P, Tryfonos C, Koptides D, et al
    Molecular epidemiology of SARS-CoV-2 in Cyprus.
    PLoS One. 2021;16:e0248792.
    PubMed     Abstract available

  25. LI Q, Yu X, Chen L, Zhao G, et al
    Genome-wide identification and expression analysis of the NCED family in cotton (Gossypium hirsutum L.).
    PLoS One. 2021;16:e0246021.
    PubMed     Abstract available

  26. MENDOZA N, Rivas E, Rodriguez-Roisin R, Garcia T, et al
    Liver epigenome changes in patients with hepatopulmonary syndrome: A pilot study.
    PLoS One. 2021;16:e0245046.
    PubMed     Abstract available

  27. HEWITSON L, Mathews JA, Devlin M, Schutte C, et al
    Blood biomarker discovery for autism spectrum disorder: A proteomic analysis.
    PLoS One. 2021;16:e0246581.
    PubMed     Abstract available

  28. CAI L, Wu H, Zhou K
    Improved cancer biomarkers identification using network-constrained infinite latent feature selection.
    PLoS One. 2021;16:e0246668.
    PubMed     Abstract available

  29. LIAO TY, Lu PL, Yu YH, Huang WC, et al
    Amphidromous but endemic: Population connectivity of Rhinogobius gigas (Teleostei: Gobioidei).
    PLoS One. 2021;16:e0246406.
    PubMed     Abstract available

  30. DE AK, Sawhney S, Bhattacharya D, Sujatha T, et al
    Origin, genetic diversity and evolution of Andaman local duck, a native duck germplasm of an insular region of India.
    PLoS One. 2021;16:e0245138.
    PubMed     Abstract available

  31. LEE N, Kim SM, Lee Y, Jeong D, et al
    Prognostic value of integrated cytogenetic, somatic variation, and copy number variation analyses in Korean patients with newly diagnosed multiple myeloma.
    PLoS One. 2021;16:e0246322.
    PubMed     Abstract available

  32. SCHWABER JL, Korbie D, Andersen S, Lin E, et al
    Network mapping of primary CD34+ cells by Ampliseq based whole transcriptome targeted resequencing identifies unexplored differentiation regulatory relationships.
    PLoS One. 2021;16:e0246107.
    PubMed     Abstract available

  33. FUKUYAMA K, Asagiri M, Sugimoto M, Tsushima H, et al
    Gene expression profiles of liver cancer cell lines reveal two hepatocyte-like and fibroblast-like clusters.
    PLoS One. 2021;16:e0245939.
    PubMed     Abstract available

  34. HAN J, Guo T, Yue Y, Lu Z, et al
    Quantitative proteomic analysis identified differentially expressed proteins with tail/rump fat deposition in Chinese thin- and fat-tailed lambs.
    PLoS One. 2021;16:e0246279.
    PubMed     Abstract available

    January 2020
  35. KORDY K, Gaufin T, Mwangi M, Li F, et al
    Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve.
    PLoS One. 2020;15:e0219633.
    PubMed     Abstract available

  36. XU P, Tang G, Cui W, Chen G, et al
    Transcriptional Differences in Peanut (Arachis hypogaea L.) Seeds at the Freshly Harvested, After-ripening and Newly Germinated Seed Stages: Insights into the Regulatory Networks of Seed Dormancy Release and Germination.
    PLoS One. 2020;15:e0219413.
    PubMed     Abstract available

  37. GRAHAM CF, Boreham DR, Manzon RG, Stott W, et al
    How "simple" methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish.
    PLoS One. 2020;15:e0226608.
    PubMed     Abstract available

  38. NOTT MA, Driscoll HE, Takeda M, Vangala M, et al
    Advanced biofilm analysis in streams receiving organic deicer runoff.
    PLoS One. 2020;15:e0227567.
    PubMed     Abstract available

  39. LV L, Yu K, Lu H, Zhang X, et al
    Transcriptome-wide identification of novel circular RNAs in soybean in response to low-phosphorus stress.
    PLoS One. 2020;15:e0227243.
    PubMed     Abstract available

  40. RASMUSSEN SL, Nielsen JL, Jones OR, Berg TB, et al
    Genetic structure of the European hedgehog (Erinaceus europaeus) in Denmark.
    PLoS One. 2020;15:e0227205.
    PubMed     Abstract available

  41. SETIAWAN AB, Teo CH, Kikuchi S, Sassa H, et al
    Centromeres of Cucumis melo L. comprise Cmcent and two novel repeats, CmSat162 and CmSat189.
    PLoS One. 2020;15:e0227578.
    PubMed     Abstract available

  42. VEITH M, Gocmen B, Sotiropoulos K, Eleftherakos K, et al
    Phylogeographic analyses point to long-term survival on the spot in micro-endemic Lycian salamanders.
    PLoS One. 2020;15:e0226326.
    PubMed     Abstract available

  43. MA Z, Wang L, Zhao M, Gu S, et al
    iTRAQ proteomics reveals the regulatory response to Magnaporthe oryzae in durable resistant vs. susceptible rice genotypes.
    PLoS One. 2020;15:e0227470.
    PubMed     Abstract available

  44. ARAUCO-SHAPIRO G, Schumacher KI, Boersma D, Bouzat JL, et al
    The role of demographic history and selection in shaping genetic diversity of the Galapagos penguin (Spheniscus mendiculus).
    PLoS One. 2020;15:e0226439.
    PubMed     Abstract available

  45. LONGCHAMPS RJ, Castellani CA, Yang SY, Newcomb CE, et al
    Evaluation of mitochondrial DNA copy number estimation techniques.
    PLoS One. 2020;15:e0228166.
    PubMed     Abstract available

  46. HE D, Zhang J, Zhang X, He S, et al
    Development of SSR markers in Paeonia based on De Novo transcriptomic assemblies.
    PLoS One. 2020;15:e0227794.
    PubMed     Abstract available

  47. WISCOVITCH-RUSSO R, Rivera-Perez J, Narganes-Storde YM, Garcia-Roldan E, et al
    Pre-Columbian zoonotic enteric parasites: An insight into Puerto Rican indigenous culture diets and life styles.
    PLoS One. 2020;15:e0227810.
    PubMed     Abstract available

  48. KIM SH, Kim SW, Lim GH, Lyu JI, et al
    Transcriptome analysis to identify candidate genes associated with the yellow-leaf phenotype of a Cymbidium mutant generated by gamma-irradiation.
    PLoS One. 2020;15:e0228078.
    PubMed     Abstract available

  49. SMIDT EC, Paez MZ, Vieira LDN, Viruel J, et al
    Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae).
    PLoS One. 2020;15:e0227991.
    PubMed     Abstract available

  50. HERZBERG D, Strobel P, Muller H, Meneses C, et al
    Proteomic profiling of proteins in the dorsal horn of the spinal cord in dairy cows with chronic lameness.
    PLoS One. 2020;15:e0228134.
    PubMed     Abstract available

  51. CHUNG YW, Gwak HJ, Moon S, Rho M, et al
    Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
    PLoS One. 2020;15:e0227886.
    PubMed     Abstract available

  52. DE CESARE A, Sala C, Castellani G, Astolfi A, et al
    Effect of Lactobacillus acidophilus D2/CSL (CECT 4529) supplementation in drinking water on chicken crop and caeca microbiome.
    PLoS One. 2020;15:e0228338.
    PubMed     Abstract available

  53. AHSAN T, Urmi NJ, Sajib AA
    Heterogeneity in the distribution of 159 drug-response related SNPs in world populations and their genetic relatedness.
    PLoS One. 2020;15:e0228000.
    PubMed     Abstract available

  54. TIAN X, Xie J, Yu J
    Physiological and transcriptomic responses of Lanzhou Lily (Lilium davidii, var. unicolor) to cold stress.
    PLoS One. 2020;15:e0227921.
    PubMed     Abstract available

  55. CHEN SM, Lin CE, Chen HH, Cheng YF, et al
    Effect of prednisolone on glyoxalase 1 in an inbred mouse model of aristolochic acid nephropathy using a proteomics method with fluorogenic derivatization-liquid chromatography-tandem mass spectrometry.
    PLoS One. 2020;15:e0227838.
    PubMed     Abstract available

  56. VAN HOUT D, Verschuuren TD, Bruijning-Verhagen PCJ, Bosch T, et al
    Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content.
    PLoS One. 2020;15:e0227604.
    PubMed     Abstract available

  57. KHADIR A, Madhu D, Kavalakatt S, Cherian P, et al
    PR3 levels are impaired in plasma and PBMCs from Arabs with cardiovascular diseases.
    PLoS One. 2020;15:e0227606.
    PubMed     Abstract available

  58. RONDINONE V, Serrecchia L, Parisi A, Fasanella A, et al
    Genetic characterization of Bacillus anthracis strains circulating in Italy from 1972 to 2018.
    PLoS One. 2020;15:e0227875.
    PubMed     Abstract available

  59. MOHAMED A, Collins J, Jiang H, Molendijk J, et al
    Concurrent lipidomics and proteomics on malignant plasma cells from multiple myeloma patients: Probing the lipid metabolome.
    PLoS One. 2020;15:e0227455.
    PubMed     Abstract available

  60. LV Y, He XY, Li D, Liu T, et al
    Sex-specific and opposite modulatory aspects revealed by PPI network and pathway analysis of ischemic stroke in humans.
    PLoS One. 2020;15:e0227481.
    PubMed     Abstract available

  61. HOANG TTH, Dang DA, Pham TH, Luong MH, et al
    Epidemiological and comparative genomic analysis of Bacillus anthracis isolated from northern Vietnam.
    PLoS One. 2020;15:e0228116.
    PubMed     Abstract available

  62. TFAILY MA, Nassar F, Sellam LS, Amir-Tidadini ZC, et al
    miRNA expression in advanced Algerian breast cancer tissues.
    PLoS One. 2020;15:e0227928.
    PubMed     Abstract available

  63. BABA T, Momen M, Campbell MT, Walia H, et al
    Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping.
    PLoS One. 2020;15:e0228118.
    PubMed     Abstract available

  64. RAMDASI AY, Arankalle VA
    The expression patterns of immune response genes in the Peripheral Blood Mononuclear cells of pregnant women presenting with subclinical or clinical HEV infection are different and trimester-dependent: A whole transcriptome analysis.
    PLoS One. 2020;15:e0228068.
    PubMed     Abstract available

  65. MOLES L, Gomez M, Moroder E, Bustos G, et al
    Staphylococcus epidermidis in feedings and feces of preterm neonates.
    PLoS One. 2020;15:e0227823.
    PubMed     Abstract available

  66. CHIUMIENTO IR, Ituarte S, Sun J, Qiu JW, et al
    Hemocyanin of the caenogastropod Pomacea canaliculata exhibits evolutionary differences among gastropod clades.
    PLoS One. 2020;15:e0228325.
    PubMed     Abstract available

  67. DAMAZIAK K, Kieliszek M, Buclaw M
    Characterization of structure and protein of vitelline membranes of precocial (ring-necked pheasant, gray partridge) and superaltricial (cockatiel parrot, domestic pigeon) birds.
    PLoS One. 2020;15:e0228310.
    PubMed     Abstract available

  68. MOBARK NA, Alharbi M, Alhabeeb L, AlMubarak L, et al
    Clinical management and genomic profiling of pediatric low-grade gliomas in Saudi Arabia.
    PLoS One. 2020;15:e0228356.
    PubMed     Abstract available

  69. ROMAGNOLI CL, Pellegrino KCM, Silva NM, Brianesi UA, et al
    Diversity of Mycobacteriaceae from aquatic environment at the Sao Paulo Zoological Park Foundation in Brazil.
    PLoS One. 2020;15:e0227759.
    PubMed     Abstract available

  70. MORRO B, Doherty MK, Balseiro P, Handeland SO, et al
    Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss).
    PLoS One. 2020;15:e0227003.
    PubMed     Abstract available

  71. RANDHAWA GS, Soltysiak MPM, El Roz H, de Souza CPE, et al
    Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study.
    PLoS One. 2020;15:e0232391.
    PubMed     Abstract available

  72. DEVANGA RAGUPATHI NK, Veeraraghavan B, Muthuirulandi Sethuvel DP, Anandan S, et al
    First Indian report on genome-wide comparison of multidrug-resistant Escherichia coli from blood stream infections.
    PLoS One. 2020;15:e0220428.
    PubMed     Abstract available

  73. VAN NEER W, Alhaique F, Wouters W, Dierickx K, et al
    Aquatic fauna from the Takarkori rock shelter reveals the Holocene central Saharan climate and palaeohydrography.
    PLoS One. 2020;15:e0228588.
    PubMed     Abstract available

  74. REYNOLDS DA, Yoo MJ, Dixson DL, Ross C, et al
    Exposure to the Florida red tide dinoflagellate, Karenia brevis, and its associated brevetoxins induces ecophysiological and proteomic alterations in Porites astreoides.
    PLoS One. 2020;15:e0228414.
    PubMed     Abstract available

  75. KIM MH, Jeong H, Sim YM, Lee S, et al
    Using comparative genomics to understand molecular features of carbapenem-resistant Acinetobacter baumannii from South Korea causing invasive infections and their clinical implications.
    PLoS One. 2020;15:e0229416.
    PubMed     Abstract available

  76. CASSINI CS, Taucce PPG, de Carvalho TR, Fouquet A, et al
    One step beyond a broad molecular phylogenetic analysis: Species delimitation of Adenomera marmorata Steindachner, 1867 (Anura: Leptodactylidae).
    PLoS One. 2020;15:e0229324.
    PubMed     Abstract available

  77. CRISCUOLO NG, Angelini C
    StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis.
    PLoS One. 2020;15:e0229330.
    PubMed     Abstract available

  78. YAO L, Yu Q, Huang M, Song Z, et al
    Comparative iTRAQ proteomic profiling of sweet orange fruit on sensitive and tolerant rootstocks infected by 'Candidatus Liberibacter asiaticus'.
    PLoS One. 2020;15:e0228876.
    PubMed     Abstract available

  79. ZHU W, Cheng X, Ren C, Chen J, et al
    Proteomic characterization and comparison of ram (Ovis aries) and buck (Capra hircus) spermatozoa proteome using a data independent acquisition mass spectometry (DIA-MS) approach.
    PLoS One. 2020;15:e0228656.
    PubMed     Abstract available

  80. GU L, Wang F, Lin Z, Xu T, et al
    Genetic characteristics of Jiaji Duck by whole genome re-sequencing.
    PLoS One. 2020;15:e0228964.
    PubMed     Abstract available

  81. IBETO L, Antonopoulos A, Grassi P, Pang PC, et al
    Insights into the hyperglycosylation of human chorionic gonadotropin revealed by glycomics analysis.
    PLoS One. 2020;15:e0228507.
    PubMed     Abstract available

  82. COOMBS GW, Baines SL, Howden BP, Swenson KM, et al
    Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus.
    PLoS One. 2020;15:e0228676.
    PubMed     Abstract available

  83. KHRUNIN AV, Khvorykh GV, Fedorov AN, Limborska SA, et al
    Genomic landscape of the signals of positive natural selection in populations of Northern Eurasia: A view from Northern Russia.
    PLoS One. 2020;15:e0228778.
    PubMed     Abstract available

  84. VOLC SM, Ramos CRN, Galvao HCR, Felicio PS, et al
    The Brazilian TP53 mutation (R337H) and sarcomas.
    PLoS One. 2020;15:e0227260.
    PubMed     Abstract available

  85. HIN N, Newman M, Kaslin J, Douek AM, et al
    Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2.
    PLoS One. 2020;15:e0227258.
    PubMed     Abstract available

  86. JHA AR, Shmalberg J, Tanprasertsuk J, Perry L, et al
    Characterization of gut microbiomes of household pets in the United States using a direct-to-consumer approach.
    PLoS One. 2020;15:e0227289.
    PubMed     Abstract available

  87. PETZOLD A, Hassanin A
    A comparative approach for species delimitation based on multiple methods of multi-locus DNA sequence analysis: A case study of the genus Giraffa (Mammalia, Cetartiodactyla).
    PLoS One. 2020;15:e0217956.
    PubMed     Abstract available

  88. GENG W, Qi Y, Li W, McConville TH, et al
    Epidemiology of Staphylococcus aureus in neonates on admission to a Chinese neonatal intensive care unit.
    PLoS One. 2020;15:e0211845.
    PubMed     Abstract available

  89. KIM KH, Kim JY, Lim WJ, Jeong S, et al
    Genome-wide association and epistatic interactions of flowering time in soybean cultivar.
    PLoS One. 2020;15:e0228114.
    PubMed     Abstract available

  90. AL-WAJEEH AS, Salhimi SM, Al-Mansoub MA, Khalid IA, et al
    Comparative proteomic analysis of different stages of breast cancer tissues using ultra high performance liquid chromatography tandem mass spectrometer.
    PLoS One. 2020;15:e0227404.
    PubMed     Abstract available

  91. TUCCI P, Portela M, Chetto CR, Gonzalez-Sapienza G, et al
    Integrative proteomic and glycoproteomic profiling of Mycobacterium tuberculosis culture filtrate.
    PLoS One. 2020;15:e0221837.
    PubMed     Abstract available

  92. BRUMFIELD KD, Huq A, Colwell RR, Olds JL, et al
    Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
    PLoS One. 2020;15:e0228899.
    PubMed     Abstract available

  93. TUSIIME FM, Gizaw A, Gussarova G, Nemomissa S, et al
    Afro-alpine flagships revisited: Parallel adaptation, intermountain admixture and shallow genetic structuring in the giant senecios (Dendrosenecio).
    PLoS One. 2020;15:e0228979.
    PubMed     Abstract available

  94. YE L, Liu P, Shi T, Wang A, et al
    Transcriptomic analysis to elucidate the response of honeybees (Hymenoptera: Apidae) to amitraz treatment.
    PLoS One. 2020;15:e0228933.
    PubMed     Abstract available

  95. BELTER A, Barciszewski J, Barciszewska AM
    Revealing the epigenetic effect of temozolomide on glioblastoma cell lines in therapeutic conditions.
    PLoS One. 2020;15:e0229534.
    PubMed     Abstract available

  96. SOLLER JM, Ausband DE, Szykman Gunther M
    The curse of observer experience: Error in noninvasive genetic sampling.
    PLoS One. 2020;15:e0229762.
    PubMed     Abstract available

  97. RHEAD B, Shao X, Quach H, Ghai P, et al
    Global expression and CpG methylation analysis of primary endothelial cells before and after TNFa stimulation reveals gene modules enriched in inflammatory and infectious diseases and associated DMRs.
    PLoS One. 2020;15:e0230884.
    PubMed     Abstract available

  98. HORITA T, Gaballah MH, Fukuta M, Kanno S, et al
    Time course analysis of large-scale gene expression in incised muscle using correspondence analysis.
    PLoS One. 2020;15:e0230737.
    PubMed     Abstract available

  99. JANGID A, Fukuda S, Seki M, Horiuchi T, et al
    Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice.
    PLoS One. 2020;15:e0228358.
    PubMed     Abstract available

  100. QUINTEIRO J, Rodriguez-Castro J, Rey-Mendez M, Gonzalez-Henriquez N, et al
    Phylogeography of the insular populations of common octopus, Octopus vulgaris Cuvier, 1797, in the Atlantic Macaronesia.
    PLoS One. 2020;15:e0230294.
    PubMed     Abstract available

  101. NAINO JIKA AK, Le Ru B, Capdevielle-Dulac C, Chardonnet F, et al
    Population genetics of the Mediterranean corn borer (Sesamia nonagrioides) differs between wild and cultivated plants.
    PLoS One. 2020;15:e0230434.
    PubMed     Abstract available

  102. ALBRECHT F, Hering J, Fuchs E, Illera JC, et al
    Phylogeny of the Eurasian Wren Nannus troglodytes (Aves: Passeriformes: Troglodytidae) reveals deep and complex diversification patterns of Ibero-Maghrebian and Cyrenaican populations.
    PLoS One. 2020;15:e0230151.
    PubMed     Abstract available

  103. IVANOVA AA, Zhelezova AD, Chernov TI, Dedysh SN, et al
    Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils.
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  742. VIDMAN L, Kallberg D, Ryden P
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    PubMed     Abstract available

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    PubMed     Abstract available

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    PubMed     Abstract available

  779. TAMPUU A, Bzhalava Z, Dillner J, Vicente R, et al
    ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples.
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  780. DUANGKUMPHA K, Stoll T, Phetcharaburanin J, Yongvanit P, et al
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    PubMed     Abstract available

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    Reconstruction of the spatial and temporal dynamics of hepatitis B virus genotype D in the Americas.
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    PubMed     Abstract available

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    Phylogeography and conservation genetics of the rare and relict Bretschneidera sinensis (Akaniaceae).
    PLoS One. 2018;13:e0189034.
    PubMed     Abstract available

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    PLoS One. 2018;13:e0189209.
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    PLoS One. 2018;13:e0189278.
    PubMed     Abstract available

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    PLoS One. 2018;13:e0189188.
    PubMed     Abstract available

  788. ZABOIKIN M, Freter C, Srinivasakumar N
    Gaussian decomposition of high-resolution melt curve derivatives for measuring genome-editing efficiency.
    PLoS One. 2018;13:e0190192.
    PubMed     Abstract available

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    Extension of the viral ecology in humans using viral profile hidden Markov models.
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    PubMed     Abstract available

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    Phylogeography of screaming hairy armadillo Chaetophractus vellerosus: Successive disjunctions and extinctions due to cyclical climatic changes in southern South America.
    PLoS One. 2018;13:e0190944.
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  792. FISCH-MULLER S, Mol JHA, Covain R
    An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complex.
    PLoS One. 2018;13:e0189789.
    PubMed     Abstract available

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    Molecular and functional analysis of anchorage independent, treatment-evasive neuroblastoma tumorspheres with enhanced malignant properties: A possible explanation for radio-therapy resistance.
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    Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds.
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    PLoS One. 2018;13:e0190175.
    PubMed     Abstract available

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    A census of P. longum's phytochemicals and their network pharmacological evaluation for identifying novel drug-like molecules against various diseases, with a special focus on neurological disorders.
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  798. VILLEGAS LEM, Campolina TB, Barnabe NR, Orfano AS, et al
    Zika virus infection modulates the bacterial diversity associated with Aedes aegypti as revealed by metagenomic analysis.
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    Isolation and characterization of a novel metagenomic enzyme capable of degrading bacterial phytotoxin toxoflavin.
    PLoS One. 2018;13:e0183893.
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    Integrated genetic and epigenetic prediction of coronary heart disease in the Framingham Heart Study.
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    PubMed     Abstract available

  801. PETKEVICIUTE R, Stunzenas V, Staneviciute G
    Comments on species divergence in the genus Sphaerium (Bivalvia) and phylogenetic affinities of Sphaerium nucleus and S. corneum var. mamillanum based on karyotypes and sequences of 16S and ITS1 rDNA.
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  802. LIU J, Liu J, Wang G, Liu G, et al
    Electroacupuncture at Guanyuan (CV 4), Zusanli (ST 36) and Baihui (DU 20) regulate the aging-related changes in gene expression profile of the hippocampus in sub-acutely aging rats.
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    Salivary proteomics of healthy dogs: An in depth catalog.
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    Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii.
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  806. FUJITA T, Kozuka-Hata H, Hori Y, Takeuchi J, et al
    Shotgun proteomics deciphered age/division of labor-related functional specification of three honeybee (Apis mellifera L.) exocrine glands.
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    Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data.
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  808. MAYFIELD AB, Chen YJ, Lu CY, Chen CS, et al
    The proteomic response of the reef coral Pocillopora acuta to experimentally elevated temperatures.
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  809. HIBINO A, Saito R, Taniguchi K, Zaraket H, et al
    Molecular epidemiology of human respiratory syncytial virus among children in Japan during three seasons and hospitalization risk of genotype ON1.
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  810. GHANDHI SA, Turner HC, Shuryak I, Dugan GO, et al
    Whole thorax irradiation of non-human primates induces persistent nuclear damage and gene expression changes in peripheral blood cells.
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  811. ZHAN XY, Zhu QY
    Molecular typing of Legionella pneumophila isolates from environmental water samples and clinical samples using a five-gene sequence typing and standard Sequence-Based Typing.
    PLoS One. 2018;13:e0190986.
    PubMed     Abstract available

  812. AIBEKOVA L, Foley B, Hortelano G, Raees M, et al
    Molecular epidemiology of HIV-1 subtype A in former Soviet Union countries.
    PLoS One. 2018;13:e0191891.
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    Comparative genomics reveals differences in mobile virulence genes of Escherichia coli O103 pathotypes of bovine fecal origin.
    PLoS One. 2018;13:e0191362.
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  814. LEVANEN R, Thulin CG, Spong G, Pohjoismaki JLO, et al
    Widespread introgression of mountain hare genes into Fennoscandian brown hare populations.
    PLoS One. 2018;13:e0191790.
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  815. ALKHAMIS MA, Gallardo C, Jurado C, Soler A, et al
    Phylodynamics and evolutionary epidemiology of African swine fever p72-CVR genes in Eurasia and Africa.
    PLoS One. 2018;13:e0192565.
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  816. VONDRACEK D, Fuchsova A, Ahrens D, Kral D, et al
    Phylogeography and DNA-based species delimitation provide insight into the taxonomy of the polymorphic rose chafer Protaetia (Potosia) cuprea species complex (Coleoptera: Scarabaeidae: Cetoniinae) in the Western Palearctic.
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  817. WALLACE JC, Youngblood JE, Port JA, Cullen AC, et al
    Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts.
    PLoS One. 2018;13:e0192412.
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  818. TADESSE G, Tessema TS, Beyene G, Aseffa A, et al
    Molecular epidemiology of fluoroquinolone resistant Salmonella in Africa: A systematic review and meta-analysis.
    PLoS One. 2018;13:e0192575.
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  819. DWIVEDI B, Kowalski J
    shinyGISPA: A web application for characterizing phenotype by gene sets using multiple omics data combinations.
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  820. DE LA FUENTE C, Pinkham C, Dabbagh D, Beitzel B, et al
    Phosphoproteomic analysis reveals Smad protein family activation following Rift Valley fever virus infection.
    PLoS One. 2018;13:e0191983.
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  821. YANG H, Cai Y, Zhuo Z, Yang W, et al
    Transcriptome analysis in different developmental stages of Batocera horsfieldi (Coleoptera: Cerambycidae) and comparison of candidate olfactory genes.
    PLoS One. 2018;13:e0192730.
    PubMed     Abstract available

  822. GAUTAM SS, Mac Aogain M, Cooley LA, Haug G, et al
    Molecular epidemiology of tuberculosis in Tasmania and genomic characterisation of its first known multi-drug resistant case.
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    Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses.
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  824. VALLES SM, Porter SD, Calcaterra LA
    Prospecting for viral natural enemies of the fire ant Solenopsis invicta in Argentina.
    PLoS One. 2018;13:e0192377.
    PubMed     Abstract available

  825. DRAG M, Hansen MB, Kadarmideen HN
    Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs.
    PLoS One. 2018;13:e0192673.
    PubMed     Abstract available

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    Proteomics analysis identified peroxiredoxin 2 involved in early-phase left ventricular impairment in hamsters with cardiomyopathy.
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    Geographical and environmental determinants of the genetic structure of wild barley in southeastern Anatolia.
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    Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis.
    PLoS One. 2018;13:e0192277.
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    Identification of fungi in shotgun metagenomics datasets.
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    Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.
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    Comparative and network-based proteomic analysis of low dose ethanol- and lipopolysaccharide-induced macrophages.
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  832. VELEZ G, Machlab DA, Tang PH, Sun Y, et al
    Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases.
    PLoS One. 2018;13:e0193250.
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  833. COSTA WJEM, Amorim PF, Mattos JLO
    Synchronic historical patterns of species diversification in seasonal aplocheiloid killifishes of the semi-arid Brazilian Caatinga.
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    PubMed     Abstract available

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    Molecular epidemiology and drug sensitivity pattern of Mycobacterium tuberculosis strains isolated from pulmonary tuberculosis patients in and around Ambo Town, Central Ethiopia.
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    Identification and characterization of microRNAs in the intestinal tissues of sheep (Ovis aries).
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    Proteomic characterization of fresh spermatozoa and supernatant after cryopreservation in relation to freezability of carp (Cyprinus carpio L) semen.
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    PubMed     Abstract available

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    First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution.
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    On geographic barriers and Pleistocene glaciations: Tracing the diversification of the Russet-crowned Warbler (Myiothlypis coronata) along the Andes.
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    A comparative analysis of microbial profile of Guinea fowl and chicken using metagenomic approach.
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    Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.
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    Integrated analysis of tumor differentiation genes in pancreatic adenocarcinoma.
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    Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species.
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    HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold.
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    The phylogenetic analysis of VP1 genomic region in foot-and-mouth disease virus serotype O isolates in Sri Lanka reveals the existence of 'Srl-97', a newly named endemic lineage.
    PLoS One. 2018;13:e0194077.
    PubMed     Abstract available

  845. CHAVARIE L, Howland KL, Harris LN, Hansen MJ, et al
    From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?
    PLoS One. 2018;13:e0193925.
    PubMed     Abstract available

  846. JOHNSON M, Alsaleh N, Mendoza RP, Persaud I, et al
    Genomic and transcriptomic comparison of allergen and silver nanoparticle-induced mast cell degranulation reveals novel non-immunoglobulin E mediated mechanisms.
    PLoS One. 2018;13:e0193499.
    PubMed     Abstract available

  847. DAANE KM, Middleton MC, Sforza RFH, Kamps-Hughes N, et al
    Determining the geographic origin of invasive populations of the mealybug Planococcus ficus based on molecular genetic analysis.
    PLoS One. 2018;13:e0193852.
    PubMed     Abstract available

  848. BARTOSOVA-SOJKOVA P, Lovy A, Reed CC, Lisnerova M, et al
    Life in a rock pool: Radiation and population genetics of myxozoan parasites in hosts inhabiting restricted spaces.
    PLoS One. 2018;13:e0194042.
    PubMed     Abstract available

  849. KIM K, Jung J, Caetano-Anolles K, Sung S, et al
    Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle.
    PLoS One. 2018;13:e0193701.
    PubMed     Abstract available

  850. ZHANG Z, Du H, Bai L, Yang C, et al
    Whole genome bisulfite sequencing reveals unique adaptations to high-altitude environments in Tibetan chickens.
    PLoS One. 2018;13:e0193597.
    PubMed     Abstract available

  851. THAPA K, Manandhar S, Bista M, Shakya J, et al
    Assessment of genetic diversity, population structure, and gene flow of tigers (Panthera tigris tigris) across Nepal's Terai Arc Landscape.
    PLoS One. 2018;13:e0193495.
    PubMed     Abstract available

  852. DE OLIVEIRA UC, Nishiyama MY Jr, Dos Santos MBV, Santos-da-Silva AP, et al
    Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions.
    PLoS One. 2018;13:e0193739.
    PubMed     Abstract available

  853. ZHANG X, Chen D, Xu G, Huang W, et al
    Molecular epidemiology and drug resistant mechanism in carbapenem-resistant Klebsiella pneumoniae isolated from pediatric patients in Shanghai, China.
    PLoS One. 2018;13:e0194000.
    PubMed     Abstract available

  854. HARVEY AJ, O'Brien C, Lambshead J, Sheedy JR, et al
    Physiological oxygen culture reveals retention of metabolic memory in human induced pluripotent stem cells.
    PLoS One. 2018;13:e0193949.
    PubMed     Abstract available

  855. BEKKER EI, Karabanov DP, Galimov YR, Haag CR, et al
    Phylogeography of Daphnia magna Straus (Crustacea: Cladocera) in Northern Eurasia: Evidence for a deep longitudinal split between mitochondrial lineages.
    PLoS One. 2018;13:e0194045.
    PubMed     Abstract available

  856. ZENG L, Kortschak RD, Raison JM, Bertozzi T, et al
    Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies.
    PLoS One. 2018;13:e0193588.
    PubMed     Abstract available

  857. RUSU I, Modi A, Vai S, Pilli E, et al
    Maternal DNA lineages at the gate of Europe in the 10th century AD.
    PLoS One. 2018;13:e0193578.
    PubMed     Abstract available

  858. AGARAS BC, Iriarte A, Valverde CF
    Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6.
    PLoS One. 2018;13:e0194088.
    PubMed     Abstract available

  859. XING M, Sun C, Li H, Hu S, et al
    Integrated analysis of transcriptome and proteome changes related to the Ogura cytoplasmic male sterility in cabbage.
    PLoS One. 2018;13:e0193462.
    PubMed     Abstract available

  860. BUHNER S, Hahne H, Hartwig K, Li Q, et al
    Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients.
    PLoS One. 2018;13:e0193943.
    PubMed     Abstract available

  861. SKEIE JM, Aldrich BT, Goldstein AS, Schmidt GA, et al
    Proteomic analysis of corneal endothelial cell-descemet membrane tissues reveals influence of insulin dependence and disease severity in type 2 diabetes mellitus.
    PLoS One. 2018;13:e0192287.
    PubMed     Abstract available

  862. BERG AT, Chakravorty S, Koh S, Grinspan ZM, et al
    Why West? Comparisons of clinical, genetic and molecular features of infants with and without spasms.
    PLoS One. 2018;13:e0193599.
    PubMed     Abstract available

  863. MIYAUCHI E, Furuta T, Ohtsuki S, Tachikawa M, et al
    Identification of blood biomarkers in glioblastoma by SWATH mass spectrometry and quantitative targeted absolute proteomics.
    PLoS One. 2018;13:e0193799.
    PubMed     Abstract available

  864. HUANG J, Wei H, Li L, Yu S, et al
    Transcriptome analysis of nitric oxide-responsive genes in upland cotton (Gossypium hirsutum).
    PLoS One. 2018;13:e0192367.
    PubMed     Abstract available

  865. GOMES VIANA JP, Bohrer Monteiro Siqueira MV, Araujo FL, Grando C, et al
    Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.
    PLoS One. 2018;13:e0192165.
    PubMed     Abstract available

  866. AUMAILLEY L, Roux-Dalvai F, Kelly I, Droit A, et al
    Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional Werner syndrome (Wrn) mutant protein.
    PLoS One. 2018;13:e0193170.
    PubMed     Abstract available

  867. CRONA K
    Recombination and peak jumping.
    PLoS One. 2018;13:e0193123.
    PubMed     Abstract available

  868. NEWBERG LA, Chen X, Kodira CD, Zavodszky MI, et al
    Computational de novo discovery of distinguishing genes for biological processes and cell types in complex tissues.
    PLoS One. 2018;13:e0193067.
    PubMed     Abstract available

  869. HICKS J, Stuber T, Lantz K, Erdman M, et al
    Genomic diversity of Taylorella equigenitalis introduced into the United States from 1978 to 2012.
    PLoS One. 2018;13:e0194253.
    PubMed     Abstract available

  870. MA J, Saghatelian A, Shokhirev MN
    The influence of transcript assembly on the proteogenomics discovery of microproteins.
    PLoS One. 2018;13:e0194518.
    PubMed     Abstract available

  871. GELDENHUYS M, Mortlock M, Weyer J, Bezuidt O, et al
    A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa.
    PLoS One. 2018;13:e0194527.
    PubMed     Abstract available

  872. LIU C, Ran X, Wang J, Li S, et al
    Detection of genomic structural variations in Guizhou indigenous pigs and the comparison with other breeds.
    PLoS One. 2018;13:e0194282.
    PubMed     Abstract available

  873. DONG Y, Sun Y, Qin C
    Predicting protein complexes using a supervised learning method combined with local structural information.
    PLoS One. 2018;13:e0194124.
    PubMed     Abstract available

  874. SANCHEZ C, Mazzucchelli G, Lambert C, Comblain F, et al
    Comparison of secretome from osteoblasts derived from sclerotic versus non-sclerotic subchondral bone in OA: A pilot study.
    PLoS One. 2018;13:e0194591.
    PubMed     Abstract available

  875. OXUSOFF L, Prea P, Perez Y
    A complete logical approach to resolve the evolution and dynamics of mitochondrial genome in bilaterians.
    PLoS One. 2018;13:e0194334.
    PubMed     Abstract available

  876. VISSER JH, Bennett NC, Jansen van Vuuren B
    Spatial genetic diversity in the Cape mole-rat, Georychus capensis: Extreme isolation of populations in a subterranean environment.
    PLoS One. 2018;13:e0194165.
    PubMed     Abstract available

  877. CHEN C, Long L, Zhang F, Chen Q, et al
    Antifungal activity, main active components and mechanism of Curcuma longa extract against Fusarium graminearum.
    PLoS One. 2018;13:e0194284.
    PubMed     Abstract available

  878. BLANCO-GUILLOT F, Castaneda-Cediel ML, Cruz-Hervert P, Ferreyra-Reyes L, et al
    Genotyping and spatial analysis of pulmonary tuberculosis and diabetes cases in the state of Veracruz, Mexico.
    PLoS One. 2018;13:e0193911.
    PubMed     Abstract available

  879. PAROLO S, Marchetti L, Lauria M, Misselbeck K, et al
    Combined use of protein biomarkers and network analysis unveils deregulated regulatory circuits in Duchenne muscular dystrophy.
    PLoS One. 2018;13:e0194225.
    PubMed     Abstract available

  880. HAJJEJ A, Almawi WY, Arnaiz-Villena A, Hattab L, et al
    The genetic heterogeneity of Arab populations as inferred from HLA genes.
    PLoS One. 2018;13:e0192269.
    PubMed     Abstract available

  881. WILSON AM, van der Nest MA, Wilken PM, Wingfield MJ, et al
    Pheromone expression reveals putative mechanism of unisexuality in a saprobic ascomycete fungus.
    PLoS One. 2018;13:e0192517.
    PubMed     Abstract available

  882. SUN X, Stewart DA, Sandhu R, Kirk EL, et al
    Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue.
    PLoS One. 2018;13:e0193792.
    PubMed     Abstract available

  883. WEBER KS, Bridgewater LC, Jensen JL, Breakwell DP, et al
    Personal microbiome analysis improves student engagement and interest in Immunology, Molecular Biology, and Genomics undergraduate courses.
    PLoS One. 2018;13:e0193696.
    PubMed     Abstract available

  884. PEOPLES LM, Donaldson S, Osuntokun O, Xia Q, et al
    Vertically distinct microbial communities in the Mariana and Kermadec trenches.
    PLoS One. 2018;13:e0195102.
    PubMed     Abstract available

  885. SEMERARO R, Orlandini V, Magi A
    Xome-Blender: A novel cancer genome simulator.
    PLoS One. 2018;13:e0194472.
    PubMed     Abstract available

  886. STOJANOVA B, Surinova M, Klapste J, Kolarikova V, et al
    Adaptive differentiation of Festuca rubra along a climate gradient revealed by molecular markers and quantitative traits.
    PLoS One. 2018;13:e0194670.
    PubMed     Abstract available

  887. CIRILLO E, Kutmon M, Gonzalez Hernandez M, Hooimeijer T, et al
    From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results.
    PLoS One. 2018;13:e0193515.
    PubMed     Abstract available

  888. BAMBHROLIYA A, Van Wyhe RD, Kumar S, Debeb BG, et al
    Gene set analysis of post-lactational mammary gland involution gene signatures in inflammatory and triple-negative breast cancer.
    PLoS One. 2018;13:e0192689.
    PubMed     Abstract available

  889. HENNEMAN P, Bouman A, Mul A, Knegt L, et al
    Widespread domain-like perturbations of DNA methylation in whole blood of Down syndrome neonates.
    PLoS One. 2018;13:e0194938.
    PubMed     Abstract available

  890. JOENVAARA S, Saraswat M, Kuusela P, Saraswat S, et al
    Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients.
    PLoS One. 2018;13:e0195006.
    PubMed     Abstract available

  891. CARTMELL KB, Sterba KR, Pickett K, Zapka J, et al
    Availability of patient-centered cancer support services: A statewide survey of cancer centers.
    PLoS One. 2018;13:e0194649.
    PubMed     Abstract available

  892. KELLY AC, Ward TJ
    Population genomics of Fusarium graminearum reveals signatures of divergent evolution within a major cereal pathogen.
    PLoS One. 2018;13:e0194616.
    PubMed     Abstract available

  893. DI FEDE M, Biagini M, Cartocci E, Parillo C, et al
    Neisseria Heparin Binding Antigen is targeted by the human alternative pathway C3-convertase.
    PLoS One. 2018;13:e0194662.
    PubMed     Abstract available

  894. DEPERI SI, Tagliotti ME, Bedogni MC, Manrique-Carpintero NC, et al
    Discriminant analysis of principal components and pedigree assessment of genetic diversity and population structure in a tetraploid potato panel using SNPs.
    PLoS One. 2018;13:e0194398.
    PubMed     Abstract available

  895. FILIPOVA D, Henry M, Rotshteyn T, Brunn A, et al
    Distinct transcriptomic changes in E14.5 mouse skeletal muscle lacking RYR1 or Cav1.1 converge at E18.5.
    PLoS One. 2018;13:e0194428.
    PubMed     Abstract available

  896. DA SILVA M, Noll FB, E Castro ACM
    Phylogeographic analysis reveals high genetic structure with uniform phenotypes in the paper wasp Protonectarina sylveirae (Hymenoptera: Vespidae).
    PLoS One. 2018;13:e0194424.
    PubMed     Abstract available

  897. GARRIS HW, Baldwin SA, Taylor J, Gurr DB, et al
    Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment.
    PLoS One. 2018;13:e0196032.
    PubMed     Abstract available

  898. ROSLI R, Amiruddin N, Ab Halim MA, Chan PL, et al
    Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.
    PLoS One. 2018;13:e0194792.
    PubMed     Abstract available

  899. YANG S, Wang Y, Wang L, Shi Z, et al
    RNA-Seq reveals differentially expressed genes affecting polyunsaturated fatty acids percentage in the Huangshan Black chicken population.
    PLoS One. 2018;13:e0195132.
    PubMed     Abstract available

  900. SCHUSTER TM, Setaro SD, Tibbits JFG, Batty EL, et al
    Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae).
    PLoS One. 2018;13:e0195034.
    PubMed     Abstract available

  901. CHAI JH, Lee CK, Lee HK, Wong N, et al
    Cost-benefit analysis of introducing next-generation sequencing (metagenomic) pathogen testing in the setting of pyrexia of unknown origin.
    PLoS One. 2018;13:e0194648.
    PubMed     Abstract available

  902. JMEL H, Romdhane L, Ben Halima Y, Hechmi M, et al
    Pharmacogenetic landscape of Metabolic Syndrome components drug response in Tunisia and comparison with worldwide populations.
    PLoS One. 2018;13:e0194842.
    PubMed     Abstract available

  903. SELA I, Wolf YI, Koonin EV
    Estimation of universal and taxon-specific parameters of prokaryotic genome evolution.
    PLoS One. 2018;13:e0195571.
    PubMed     Abstract available

  904. HU Y, Hao X, Chen L, Akhberdi O, et al
    Galpha-cAMP/PKA pathway positively regulates pigmentation, chaetoglobosin A biosynthesis and sexual development in Chaetomium globosum.
    PLoS One. 2018;13:e0195553.
    PubMed     Abstract available

  905. KEREN-AVIRAM G, Dachet F, Bagla S, Balan K, et al
    Proteomic analysis of human epileptic neocortex predicts vascular and glial changes in epileptic regions.
    PLoS One. 2018;13:e0195639.
    PubMed     Abstract available

  906. ZHOU N, Katz M, Knecht W, Compagno C, et al
    Genome dynamics and evolution in yeasts: A long-term yeast-bacteria competition experiment.
    PLoS One. 2018;13:e0194911.
    PubMed     Abstract available

  907. FERREIRA DA SILVA MJ, Kopp GH, Casanova C, Godinho R, et al
    Disrupted dispersal and its genetic consequences: Comparing protected and threatened baboon populations (Papio papio) in West Africa.
    PLoS One. 2018;13:e0194189.
    PubMed     Abstract available

  908. MAHMOUD M, Zeng Y, Shirali M, Yin T, et al
    Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens.
    PLoS One. 2018;13:e0194374.
    PubMed     Abstract available

  909. GOLIZEH M, Melendez-Pena CE, Ward BJ, Saeed S, et al
    Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging.
    PLoS One. 2018;13:e0195148.
    PubMed     Abstract available

  910. UMAIR M, Abbasi BH, Sharif S, Alam MM, et al
    High prevalence of G3 rotavirus in hospitalized children in Rawalpindi, Pakistan during 2014.
    PLoS One. 2018;13:e0195947.
    PubMed     Abstract available

  911. LI S, Dou X, Gao R, Ge X, et al
    A remark on copy number variation detection methods.
    PLoS One. 2018;13:e0196226.
    PubMed     Abstract available

  912. SILVA AC, Souza AF
    Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America.
    PLoS One. 2018;13:e0196130.
    PubMed     Abstract available

  913. MA Y, Gu L, Yang L, Sun C, et al
    Identifying artificial selection signals in the chicken genome.
    PLoS One. 2018;13:e0196215.
    PubMed     Abstract available

  914. MENDES CB, Norenburg JL, Solferini VN, Andrade SCS, et al
    Hidden diversity: Phylogeography of genus Ototyphlonemertes Diesing, 1863 (Ototyphlonemertidae: Hoplonemertea) reveals cryptic species and high diversity in Chilean populations.
    PLoS One. 2018;13:e0195833.
    PubMed     Abstract available

  915. RODGER YS, Greenbaum G, Silver M, Bar-David S, et al
    Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species' global distribution: Combining classical population genetics and network analyses.
    PLoS One. 2018;13:e0194901.
    PubMed     Abstract available

  916. GHORBANI A, Izadpanah K, Dietzgen RG
    Changes in maize transcriptome in response to maize Iranian mosaic virus infection.
    PLoS One. 2018;13:e0194592.
    PubMed     Abstract available

  917. URRESTARAZU J, Errea P, Miranda C, Santesteban LG, et al
    Genetic diversity of Spanish Prunus domestica L. germplasm reveals a complex genetic structure underlying.
    PLoS One. 2018;13:e0195591.
    PubMed     Abstract available

  918. KHAN G, Ribeiro PM, Bonatelli IAS, Perez MF, et al
    Weak population structure and no genetic erosion in Pilosocereus aureispinus: A microendemic and threatened cactus species from eastern Brazil.
    PLoS One. 2018;13:e0195475.
    PubMed     Abstract available

  919. HOLM M, Saraswat M, Joenvaara S, Ristimaki A, et al
    Colorectal cancer patients with different C-reactive protein levels and 5-year survival times can be differentiated with quantitative serum proteomics.
    PLoS One. 2018;13:e0195354.
    PubMed     Abstract available

  920. SKOWRON PM, Kropinski AM, Zebrowska J, Janus L, et al
    Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.
    PLoS One. 2018;13:e0195449.
    PubMed     Abstract available

  921. TANDON D, Haque MM, R S, Shaikh S, et al
    A snapshot of gut microbiota of an adult urban population from Western region of India.
    PLoS One. 2018;13:e0195643.
    PubMed     Abstract available

  922. ZENG J, Garrick D, Dekkers J, Fernando R, et al
    A nested mixture model for genomic prediction using whole-genome SNP genotypes.
    PLoS One. 2018;13:e0194683.
    PubMed     Abstract available

  923. GLASSET B, Herbin S, Granier SA, Cavalie L, et al
    Bacillus cereus, a serious cause of nosocomial infections: Epidemiologic and genetic survey.
    PLoS One. 2018;13:e0194346.
    PubMed     Abstract available

  924. TSURU M, Ono A, Umeyama H, Takeuchi M, et al
    Ubiquitin-dependent proteolysis of CXCL7 leads to posterior longitudinal ligament ossification.
    PLoS One. 2018;13:e0196204.
    PubMed     Abstract available

  925. RAHMAN F, Hassan M, Rosli R, Almousally I, et al
    Evolutionary and genomic analysis of the caleosin/peroxygenase (CLO/PXG) gene/protein families in the Viridiplantae.
    PLoS One. 2018;13:e0196669.
    PubMed     Abstract available

  926. RYSKALIYEVA A, Henry C, Miranda G, Faye B, et al
    Combining different proteomic approaches to resolve complexity of the milk protein fraction of dromedary, Bactrian camels and hybrids, from different regions of Kazakhstan.
    PLoS One. 2018;13:e0197026.
    PubMed     Abstract available

  927. NEUBAUER PR, Widmann C, Wibberg D, Schroder L, et al
    A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
    PLoS One. 2018;13:e0196797.
    PubMed     Abstract available

  928. FISCHER L, Rappsilber J
    False discovery rate estimation and heterobifunctional cross-linkers.
    PLoS One. 2018;13:e0196672.
    PubMed     Abstract available

  929. MIAO YT, Deng Y, Jia HK, Liu YD, et al
    Proteomic analysis of watery saliva secreted by white-backed planthopper, Sogatella furcifera.
    PLoS One. 2018;13:e0193831.
    PubMed     Abstract available

  930. BENOIT JB, Frank DN, Bessesen MT
    Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia.
    PLoS One. 2018;13:e0195860.
    PubMed     Abstract available

  931. HEBERLING JM, Mason NWH
    Are endemics functionally distinct? Leaf traits of native and exotic woody species in a New Zealand forest.
    PLoS One. 2018;13:e0196746.
    PubMed     Abstract available

  932. KLANGNURAK W, Fukuyo T, Rezanujjaman MD, Seki M, et al
    Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish.
    PLoS One. 2018;13:e0196544.
    PubMed     Abstract available

  933. KOSTRIKIS LG, Hezka J, Stylianou DC, Kostaki E, et al
    HIV-1 transmission networks across Cyprus (2010-2012).
    PLoS One. 2018;13:e0195660.
    PubMed     Abstract available

  934. PUENTE C, Abian-Vicen J, Del Coso J, Lara B, et al
    The CYP1A2 -163C>A polymorphism does not alter the effects of caffeine on basketball performance.
    PLoS One. 2018;13:e0195943.
    PubMed     Abstract available

  935. RAINE A, Liljedahl U, Nordlund J
    Data quality of whole genome bisulfite sequencing on Illumina platforms.
    PLoS One. 2018;13:e0195972.
    PubMed     Abstract available

  936. MARTINS MP, Gomes EV, Sanches PR, Pedersoli WR, et al
    mus-52 disruption and metabolic regulation in Neurospora crassa: Transcriptional responses to extracellular phosphate availability.
    PLoS One. 2018;13:e0195871.
    PubMed     Abstract available

  937. BETIKU OC, Yeoman CJ, Gaylord TG, Americus B, et al
    Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout.
    PLoS One. 2018;13:e0195967.
    PubMed     Abstract available

  938. MOHAMED RAMLI N, Giatsis C, Md Yusoff F, Verreth J, et al
    Resistance and resilience of small-scale recirculating aquaculture systems (RAS) with or without algae to pH perturbation.
    PLoS One. 2018;13:e0195862.
    PubMed     Abstract available

  939. RIVERA SF, Vasselon V, Ballorain K, Carpentier A, et al
    DNA metabarcoding and microscopic analyses of sea turtles biofilms: Complementary to understand turtle behavior.
    PLoS One. 2018;13:e0195770.
    PubMed     Abstract available

  940. GOG JR, Lever AML, Skittrall JP
    A new method for detecting signal regions in ordered sequences of real numbers, and application to viral genomic data.
    PLoS One. 2018;13:e0195763.
    PubMed     Abstract available

  941. DOLMATOV IY, Afanasyev SV, Boyko AV
    Molecular mechanisms of fission in echinoderms: Transcriptome analysis.
    PLoS One. 2018;13:e0195836.
    PubMed     Abstract available

  942. PAQUETTE SJ, Stanford K, Thomas J, Reuter T, et al
    Quantitative surveillance of shiga toxins 1 and 2, Escherichia coli O178 and O157 in feces of western-Canadian slaughter cattle enumerated by droplet digital PCR with a focus on seasonality and slaughterhouse location.
    PLoS One. 2018;13:e0195880.
    PubMed     Abstract available

  943. TRAMUTO F, Maida CM, Pojero F, Colomba GME, et al
    Case-based surveillance of measles in Sicily during 2012-2017: The changing molecular epidemiology and implications for vaccine strategies.
    PLoS One. 2018;13:e0195256.
    PubMed     Abstract available

  944. SPITSYN VM, Kondakov AV, Bolotov NI, Thi Pham N, et al
    DNA barcoding unravels contrasting evolutionary history of two widespread Asian tiger moth species during the Late Pleistocene.
    PLoS One. 2018;13:e0194200.
    PubMed     Abstract available

  945. BRINKMAN NE, Villegas EN, Garland JL, Keely SP, et al
    Reducing inherent biases introduced during DNA viral metagenome analyses of municipal wastewater.
    PLoS One. 2018;13:e0195350.
    PubMed     Abstract available

  946. MENOTTA M, Orazi S, Gioacchini AM, Spapperi C, et al
    Proteomics and transcriptomics analyses of ataxia telangiectasia cells treated with Dexamethasone.
    PLoS One. 2018;13:e0195388.
    PubMed     Abstract available

  947. CASTILLO H, Li X, Schilkey F, Smith GB, et al
    Transcriptome analysis reveals a stress response of Shewanella oneidensis deprived of background levels of ionizing radiation.
    PLoS One. 2018;13:e0196472.
    PubMed     Abstract available

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    Oral health status in historic population: Macroscopic and metagenomic evidence.
    PLoS One. 2018;13:e0196482.
    PubMed     Abstract available

  949. DEPRA GC, Graca WJD, Pavanelli CS, Avelino GS, et al
    Molecular phylogeny of Planaltina Bohlke (Characidae: Stevardiinae) and comments on the definition and geographic distribution of the genus, with description of a new species.
    PLoS One. 2018;13:e0196291.
    PubMed     Abstract available

  950. ILIE DE, Kusza S, Sauer M, Gavojdian D, et al
    Genetic characterization of indigenous goat breeds in Romania and Hungary with a special focus on genetic resistance to mastitis and gastrointestinal parasitism based on 40 SNPs.
    PLoS One. 2018;13:e0197051.
    PubMed     Abstract available

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    Investigation of lignocellulolytic enzymes during different growth phases of Ganoderma lucidum strain G0119 using genomic, transcriptomic and secretomic analyses.
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    PubMed     Abstract available

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    A repetitive mutation and selection system for bacterial evolution to increase the specific affinity to pancreatic cancer cells.
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    Fungal-type carbohydrate binding modules from the coccolithophore Emiliania huxleyi show binding affinity to cellulose and chitin.
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    PubMed     Abstract available

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    So many genes, so little time: A practical approach to divergence-time estimation in the genomic era.
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    Investigation of ciguatoxins in invasive lionfish from the greater caribbean region: Implications for fishery development.
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    Genomic information and a person's right not to know: A closer look at variations in hypothetical informational preferences in a German sample.
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    Genetic structure and dispersal patterns in Limnoria nagatai (Limnoriidae, Isopoda) dwelling in non-buoyant kelps, Eisenia bicyclis and E. arborea, in Japan.
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    PubMed     Abstract available

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    Dam trout: Genetic variability in Oncorhynchus mykiss above and below barriers in three Columbia River systems prior to restoring migrational access.
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    Virus survey in populations of two subspecies of bent-winged bats (Miniopterus orianae bassanii and oceanensis) in south-eastern Australia reveals a high prevalence of diverse herpesviruses.
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    Mitochondrial genome sequencing of a vermivorous cone snail Conus quercinus supports the correlative analysis between phylogenetic relationships and dietary types of Conus species.
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    Multigene phylogeny supports diversification of four-eyed fishes and one-sided livebearers (Cyprinodontiformes: Anablepidae) related to major South American geological events.
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    Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells.
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    PubMed     Abstract available

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    Clipperton Atoll as a model to study small marine populations: Endemism and the genomic consequences of small population size.
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    Circulating immune complexome analysis identified anti-tubulin-alpha-1c as an inflammation associated autoantibody with promising diagnostic value for Behcet's Disease.
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    PubMed     Abstract available

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    PubMed     Abstract available

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    PubMed     Abstract available

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    Molecular epidemiology and spatiotemporal dynamics of norovirus associated with sporadic acute gastroenteritis during 2013-2017, Zhoushan Islands, China.
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    Proteomic response of hybrid wild rice to cold stress at the seedling stage.
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    Using genome-scale metabolic models to compare serovars of the foodborne pathogen Listeria monocytogenes.
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    PubMed     Abstract available

  1021. KIM J, Chen B, Bru JL, Huynh E, et al
    New findings on SNP variants of human protein L-isoaspartyl methyltransferase that affect catalytic activity, thermal stability, and aggregation.
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    Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata.
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    Population genetic analysis of aquaculture salmonid populations in China using a 57K rainbow trout SNP array.
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    Connections and containers: Using genetic data to understand how watershed evolution and human activities influence cutthroat trout biogeography.
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    PubMed     Abstract available

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    Proteomic analysis of rat serum revealed the effects of chronic sleep deprivation on metabolic, cardiovascular and nervous system.
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    Characterization of a novel member of the family Caulimoviridae infecting Dioscorea nummularia in the Pacific, which may represent a new genus of dsDNA plant viruses.
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    Prevalence and geographical variation of Factor V Leiden in patients with cerebral venous thrombosis: A meta-analysis.
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    Genomic signatures of adaptive introgression and environmental adaptation in the Sheko cattle of southwest Ethiopia.
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    Phylogeographic analysis of the full genome of Sweepovirus to trace virus dispersal and introduction to Korea.
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    PubMed     Abstract available

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    Knowledge, perceptions and confidence of physicians and pharmacists towards pharmacogenetics practice in Kuwait.
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    A hypothesis of sudden body fluid vaporization in the 79 AD victims of Vesuvius.
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    The complete plastid genomes of Ophrys iricolor and O. sphegodes (Orchidaceae) and comparative analyses with other orchids.
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    Molecular epidemiology and drug resistance patterns of Mycobacterium tuberculosis complex isolates from university students and the local community in Eastern Ethiopia.
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    The significance of human respiratory syncytial virus (HRSV) in children from Ghana with acute lower respiratory tract infection: A molecular epidemiological analysis, 2006 and 2013-2014.
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    Comparative genomics, infectivity and cytopathogenicity of Zika viruses produced by acutely and persistently infected human hematopoietic cell lines.
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    Comparative transcriptome meta-analysis of Arabidopsis thaliana under drought and cold stress.
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    But they move! Vicariance and dispersal in southern South America: Using two methods to reconstruct the biogeography of a clade of lizards endemic to South America.
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    Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand.
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    Major ampullate silk gland transcriptomes and fibre proteomes of the golden orb-weavers, Nephila plumipes and Nephila pilipes (Araneae: Nephilidae).
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    Time-resolved proteomics of adenovirus infected cells.
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    PubMed     Abstract available

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    Urinary proteomic signatures associated with beta-blockade and heart rate in heart transplant recipients.
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    Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus).
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    Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA.
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    PubMed     Abstract available

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    Forensic characterization and genetic polymorphisms of 19 X-chromosomal STRs in 1344 Han Chinese individuals and comprehensive population relationship analyses among 20 Chinese groups.
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    PubMed     Abstract available

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    Maternal genetic features of the Iron Age Tagar population from Southern Siberia (1st millennium BC).
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    PubMed     Abstract available

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    Defense responses of lentil (Lens culinaris) genotypes carrying non-allelic ascochyta blight resistance genes to Ascochyta lentis infection.
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    PubMed     Abstract available

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    Novel urinary exosomal biomarkers of acute T cell-mediated rejection in kidney transplant recipients: A cross-sectional study.
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    PubMed     Abstract available

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    Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives.
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    PubMed     Abstract available

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    Evolutionary history and spatiotemporal dynamics of the HIV-1 subtype B epidemic in Guatemala.
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    PubMed     Abstract available

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    Large-scale mitochondrial DNA analysis reveals new light on the phylogeography of Central and Eastern-European Brown hare (Lepus europaeus Pallas, 1778).
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    PubMed     Abstract available

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    Population genetic analysis of autophagy and phagocytosis genes in Drosophila melanogaster and D. simulans.
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    PubMed     Abstract available

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    Quantitative phosphoproteomic analysis identifies novel functional pathways of tumor suppressor DLC1 in estrogen receptor positive breast cancer.
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    PubMed     Abstract available

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    A copy number variant scan in the autochthonous Valdostana Red Pied cattle breed and comparison with specialized dairy populations.
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    PubMed     Abstract available

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    Set-up and validation of mycobacterial interspersed repetitive unit-variable number of tandem repeat (MIRU-VNTR) analysis of Mycobacterium tuberculosis using BioNumerics software.
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    PubMed     Abstract available

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    Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle.
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    PubMed     Abstract available

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    Genetic structuring of the coastal herb Arthropodium cirratum (Asparagaceae) is shaped by low gene flow, hybridization and prehistoric translocation.
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    PubMed     Abstract available

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    Glacial refugia and speciation in a group of wind-pollinated and -dispersed, endemic Alpine species of Helictotrichon (Poaceae).
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    PubMed     Abstract available

  1121. DOS SANTOS JUNIOR ACM, Ricart CAO, Pontes AH, Fontes W, et al
    Proteome analysis of Phytomonas serpens, a phytoparasite of medical interest.
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    PubMed     Abstract available

  1122. MAHMOUD AI, Galdos FX, Dinan KA, Jedrychowski MP, et al
    Apolipoprotein E is a pancreatic extracellular factor that maintains mature beta-cell gene expression.
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    PubMed     Abstract available

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    Identification of metabolite and protein explanatory variables governing microbiome establishment and re-establishment within a cellulose-degrading anaerobic bioreactor.
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    PubMed     Abstract available

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    Efficient multi-task chemogenomics for drug specificity prediction.
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    PubMed     Abstract available

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    CRISPR deletion of MIEN1 in breast cancer cells.
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    PubMed     Abstract available

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    Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers.
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    PubMed     Abstract available

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    A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways.
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    Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat.
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    Effect of ghost pepper on cell proliferation, apoptosis, senescence and global proteomic profile in human renal adenocarcinoma cells.
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    Proteomic analysis of human prostate cancer PC-3M-1E8 cells and PC-3M-2B4 cells of same origin but with different metastatic potential.
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    PubMed     Abstract available

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    Development of nuclear microsatellite loci for Pinus albicaulis Engelm. (Pinaceae), a conifer of conservation concern.
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    PubMed     Abstract available

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    Multi-criteria protein structure comparison and structural similarities analysis using pyMCPSC.
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    GPSuc: Global Prediction of Generic and Species-specific Succinylation Sites by aggregating multiple sequence features.
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    PubMed     Abstract available

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    Understanding the cryptic introgression and mixed ancestry of Red Junglefowl in India.
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    De novo protein structure prediction using ultra-fast molecular dynamics simulation.
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    PubMed     Abstract available

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    Generation of white-eyed Daphnia magna mutants lacking scarlet function.
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    Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates.
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    Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature.
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    Genetic analyses of brown hare (Lepus europaeus) support limited migration and translocation of Greek populations.
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    Harmonization of exosome isolation from culture supernatants for optimized proteomics analysis.
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    Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation.
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    Evidence supporting cryptic species within two sessile microinvertebrates, Limnias melicerta and L. ceratophylli (Rotifera, Gnesiotrocha).
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    Phenotypic characterization and whole genome analysis of extended-spectrum beta-lactamase-producing bacteria isolated from dogs in Germany.
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    De Novo assembly, characterization and development of EST-SSRs from Bletilla striata transcriptomes profiled throughout the whole growing period.
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    Morphology and life history divergence in cave and surface populations of Gammarus lacustris (L.).
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    Molecular signatures in IASLC/ATS/ERS classified growth patterns of lung adenocarcinoma.
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    Ensemble of machine learning algorithms using the stacked generalization approach to estimate the warfarin dose.
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    Transcriptomic analysis of the salivary gland of medicinal leech Hirudo nipponia.
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    Oncogenic mutations in IKKbeta function through global changes induced by K63-linked ubiquitination and result in autocrine stimulation.
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    Mitogenomic data indicate admixture components of Central-Inner Asian and Srubnaya origin in the conquering Hungarians.
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    A most wanted list of conserved microbial protein families with no known domains.
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    A genomic ruler to assess oncogenic transition between breast tumor and stroma.
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    Clonality and geographic structure of host-specialized populations of Corynespora cassiicola causing emerging target spot epidemics in the southeastern United States.
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    Proteomic analysis of four Clostridium botulinum strains identifies proteins that link biological responses to proteomic signatures.
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    Morphological diversity of Quercus fossil pollen in the northern South China Sea during the last glacial maximum and its paleoclimatic implication.
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    PubMed     Abstract available

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    Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy.
    PLoS One. 2018;13:e0198270.
    PubMed     Abstract available

  1160. SCHILDE LM, Kosters S, Steinbach S, Schork K, et al
    Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research.
    PLoS One. 2018;13:e0206478.
    PubMed     Abstract available

  1161. KORNEJ J, Buttner P, Hammer E, Engelmann B, et al
    Circulating proteomic patterns in AF related left atrial remodeling indicate involvement of coagulation and complement cascade.
    PLoS One. 2018;13:e0198461.
    PubMed     Abstract available

  1162. SHEVCHENKO A, Schuhmann A, Thomas H, Wetzel G, et al
    Fine Endmesolithic fish caviar meal discovered by proteomics in foodcrusts from archaeological site Friesack 4 (Brandenburg, Germany).
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    PubMed     Abstract available

  1163. SOLIS-REYES S, Avino M, Poon A, Kari L, et al
    An open-source k-mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes.
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    PubMed     Abstract available

  1164. BRITO TL, Campos AB, Bastiaan von Meijenfeldt FA, Daniel JP, et al
    The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei.
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    PubMed     Abstract available

  1165. BERLE M, Ghila L, Vethe H, Chaudhry A, et al
    Novel protein signatures suggest progression to muscular invasiveness in bladder cancer.
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    PubMed     Abstract available

  1166. WU P, Dai G, Chen F, Chen L, et al
    Transcriptome profile analysis of leg muscle tissues between slow- and fast-growing chickens.
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    PubMed     Abstract available

  1167. SMITZ N, Jouvenet O, Ambwene Ligate F, Crosmary WG, et al
    A genome-wide data assessment of the African lion (Panthera leo) population genetic structure and diversity in Tanzania.
    PLoS One. 2018;13:e0205395.
    PubMed     Abstract available

  1168. WANG XH, Halling RE, Hofstetter V, Lebel T, et al
    Phylogeny, biogeography and taxonomic re-assessment of Multifurca (Russulaceae, Russulales) using three-locus data.
    PLoS One. 2018;13:e0205840.
    PubMed     Abstract available

  1169. ZACHUT M, Kra G, Moallem U, Livshitz L, et al
    Characterization of the endocannabinoid system in subcutaneous adipose tissue in periparturient dairy cows and its association to metabolic profiles.
    PLoS One. 2018;13:e0205996.
    PubMed     Abstract available

  1170. CHALLA GS, Li W
    De novo assembly of wheat root transcriptomes and transcriptional signature of longitudinal differentiation.
    PLoS One. 2018;13:e0205582.
    PubMed     Abstract available

  1171. CHEN JN, Samadi S, Chen WJ
    Rhodopsin gene evolution in early teleost fishes.
    PLoS One. 2018;13:e0206918.
    PubMed     Abstract available

  1172. CHEN HM, Lee LC, Hu KY, Tsai WJ, et al
    The application of post-translational modification oriented serum proteomics to assess experimental diabetes with complications.
    PLoS One. 2018;13:e0206509.
    PubMed     Abstract available

  1173. ADU KT, Wilson R, Nichols DS, Baker AL, et al
    Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress.
    PLoS One. 2018;13:e0206317.
    PubMed     Abstract available

  1174. CORDOVA-PALOMERA A, Palma-Gudiel H, Fores-Martos J, Tabares-Seisdedos R, et al
    Epigenetic outlier profiles in depression: A genome-wide DNA methylation analysis of monozygotic twins.
    PLoS One. 2018;13:e0207754.
    PubMed     Abstract available

  1175. LI WY, Chen M, Huang SW, Jen IA, et al
    Molecular epidemiology of HIV-1 infection among men who have sex with men in Taiwan from 2013 to 2015.
    PLoS One. 2018;13:e0202622.
    PubMed     Abstract available

  1176. MANNA S, Dunne EM, Ortika BD, Pell CL, et al
    Discovery of a Streptococcus pneumoniae serotype 33F capsular polysaccharide locus that lacks wcjE and contains a wcyO pseudogene.
    PLoS One. 2018;13:e0206622.
    PubMed     Abstract available

  1177. REED JM, Olson S, Brees DF, Griffin CE, et al
    Coordinated regulation of transcription by CcpA and the Staphylococcus aureus two-component system HptRS.
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    PubMed     Abstract available

  1178. KARLSSON R, Gonzales-Siles L, Gomila M, Busquets A, et al
    Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics.
    PLoS One. 2018;13:e0208804.
    PubMed     Abstract available

  1179. LAWRENCE YA, Dangott LJ, Rodrigues-Hoffmann A, Steiner JM, et al
    Proteomic analysis of liver tissue from dogs with chronic hepatitis.
    PLoS One. 2018;13:e0208394.
    PubMed     Abstract available

  1180. CARVALHO AMRS, Mendes TAO, Coelho EAF, Duarte MC, et al
    New antigens for the serological diagnosis of human visceral leishmaniasis identified by immunogenomic screening.
    PLoS One. 2018;13:e0209599.
    PubMed     Abstract available

  1181. PAPIEZ A, Azimzadeh O, Azizova T, Moseeva M, et al
    Integrative multiomics study for validation of mechanisms in radiation-induced ischemic heart disease in Mayak workers.
    PLoS One. 2018;13:e0209626.
    PubMed     Abstract available

  1182. TOOR A, Culibrk L, Singhera GK, Moon KM, et al
    Transcriptomic and proteomic host response to Aspergillus fumigatus conidia in an air-liquid interface model of human bronchial epithelium.
    PLoS One. 2018;13:e0209652.
    PubMed     Abstract available

  1183. DUBIN RF, Whooley M, Pico A, Ganz P, et al
    Proteomic analysis of heart failure hospitalization among patients with chronic kidney disease: The Heart and Soul Study.
    PLoS One. 2018;13:e0208042.
    PubMed     Abstract available

    January 2017
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    Identification of candidate chemosensory genes by transcriptome analysis in Loxostege sticticalis Linnaeus.
    PLoS One. 2017;12:e0174036.
    PubMed     Abstract available

  1185. BENNETT EA, Champlot S, Peters J, Arbuckle BS, et al
    Taming the late Quaternary phylogeography of the Eurasiatic wild ass through ancient and modern DNA.
    PLoS One. 2017;12:e0174216.
    PubMed     Abstract available

  1186. KANT R, Palva A, von Ossowski I
    An in silico pan-genomic probe for the molecular traits behind Lactobacillus ruminis gut autochthony.
    PLoS One. 2017;12:e0175541.
    PubMed     Abstract available

  1187. MIRANDA EA, Ferreira KM, Carvalho AT, Martins CF, et al
    Pleistocene climate changes shaped the population structure of Partamona seridoensis (Apidae, Meliponini), an endemic stingless bee from the Neotropical dry forest.
    PLoS One. 2017;12:e0175725.
    PubMed     Abstract available

  1188. HITZ BC, Rowe LD, Podduturi NR, Glick DI, et al
    SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
    PLoS One. 2017;12:e0175310.
    PubMed     Abstract available

  1189. PARDESHI P, Rao KK, Balaji PV
    Rv3634c from Mycobacterium tuberculosis H37Rv encodes an enzyme with UDP-Gal/Glc and UDP-GalNAc 4-epimerase activities.
    PLoS One. 2017;12:e0175193.
    PubMed     Abstract available

    HacDivSel: Two new methods (haplotype-based and outlier-based) for the detection of divergent selection in pairs of populations.
    PLoS One. 2017;12:e0175944.
    PubMed     Abstract available

  1191. SPONCHIADO M, Gomes NS, Fontes PK, Martins T, et al
    Pre-hatching embryo-dependent and -independent programming of endometrial function in cattle.
    PLoS One. 2017;12:e0175954.
    PubMed     Abstract available

  1192. DE CARVALHO DB, Congrains C, Chahad-Ehlers S, Pinotti H, et al
    Differential transcriptome analysis supports Rhodnius montenegrensis and Rhodnius robustus (Hemiptera, Reduviidae, Triatominae) as distinct species.
    PLoS One. 2017;12:e0174997.
    PubMed     Abstract available

  1193. PASSAMANI LZ, Barbosa RR, Reis RS, Heringer AS, et al
    Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots.
    PLoS One. 2017;12:e0176076.
    PubMed     Abstract available

  1194. DAGAMAC NHA, Rojas C, Novozhilov YK, Moreno GH, et al
    Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes).
    PLoS One. 2017;12:e0174825.
    PubMed     Abstract available

  1195. BEN-LULU S, Ziv T, Weisman-Shomer P, Benhar M, et al
    Nitrosothiol-Trapping-Based Proteomic Analysis of S-Nitrosylation in Human Lung Carcinoma Cells.
    PLoS One. 2017;12:e0169862.
    PubMed     Abstract available

  1196. FRUZANGOHAR M, Ebrahimie E, Adelson DL
    A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data.
    PLoS One. 2017;12:e0170486.
    PubMed     Abstract available

  1197. NKUIPOU-KENFACK E, Schanstra JP, Bajwa S, Pejchinovski M, et al
    The use of urinary proteomics in the assessment of suitability of mouse models for ageing.
    PLoS One. 2017;12:e0166875.
    PubMed     Abstract available

  1198. KIRICHENKO N, Triberti P, Ohshima I, Haran J, et al
    From east to west across the Palearctic: Phylogeography of the invasive lime leaf miner Phyllonorycter issikii (Lepidoptera: Gracillariidae) and discovery of a putative new cryptic species in East Asia.
    PLoS One. 2017;12:e0171104.
    PubMed     Abstract available

  1199. PEREZ T, Fernandez M, Hammer SE, Dominguez A, et al
    Multilocus Intron Trees Reveal Extensive Male-Biased Homogenization of Ancient Populations of Chamois (Rupicapra spp.) across Europe during Late Pleistocene.
    PLoS One. 2017;12:e0170392.
    PubMed     Abstract available

  1200. TRAYKOVA D, Schneider B, Chojkier M, Buck M, et al
    Blood Microbiome Quantity and the Hyperdynamic Circulation in Decompensated Cirrhotic Patients.
    PLoS One. 2017;12:e0169310.
    PubMed     Abstract available

  1201. SAGULENKO E, Nouwens A, Webb RI, Green K, et al
    Nuclear Pore-Like Structures in a Compartmentalized Bacterium.
    PLoS One. 2017;12:e0169432.
    PubMed     Abstract available

  1202. ANGULO DF, Amarilla LD, Anton AM, Sosa V, et al
    Colonization in North American Arid Lands: The Journey of Agarito (Berberis trifoliolata) Revealed by Multilocus Molecular Data and Packrat Midden Fossil Remains.
    PLoS One. 2017;12:e0168933.
    PubMed     Abstract available

  1203. PORTE B, Chatelain C, Hardouin J, Derambure C, et al
    Proteomic and transcriptomic study of brain microvessels in neonatal and adult mice.
    PLoS One. 2017;12:e0171048.
    PubMed     Abstract available

  1204. NANDAN D, Thomas SA, Nguyen A, Moon KM, et al
    Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture.
    PLoS One. 2017;12:e0170068.
    PubMed     Abstract available

  1205. MSALYA G, Kim ES, Laisser EL, Kipanyula MJ, et al
    Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses.
    PLoS One. 2017;12:e0171088.
    PubMed     Abstract available

  1206. VOROS J, Marton O, Schmidt BR, Gal JT, et al
    Surveying Europe's Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA.
    PLoS One. 2017;12:e0170945.
    PubMed     Abstract available

  1207. DOS SANTOS MD, Kretschmer R, Frankl-Vilches C, Bakker A, et al
    Comparative Cytogenetics between Two Important Songbird, Models: The Zebra Finch and the Canary.
    PLoS One. 2017;12:e0170997.
    PubMed     Abstract available

  1208. O'FARRELL AC, Evans R, Silvola JM, Miller IS, et al
    A Novel Positron Emission Tomography (PET) Approach to Monitor Cardiac Metabolic Pathway Remodeling in Response to Sunitinib Malate.
    PLoS One. 2017;12:e0169964.
    PubMed     Abstract available

  1209. LUND KT, Riaz S, Walker MA
    Population Structure, Diversity and Reproductive Mode of the Grape Phylloxera (Daktulosphaira vitifoliae) across Its Native Range.
    PLoS One. 2017;12:e0170678.
    PubMed     Abstract available

  1210. YOTOVA I, Hsu E, Do C, Gaba A, et al
    Epigenetic Alterations Affecting Transcription Factors and Signaling Pathways in Stromal Cells of Endometriosis.
    PLoS One. 2017;12:e0170859.
    PubMed     Abstract available

  1211. FU Y, Xu X, Xue J, Duan W, et al
    Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis.
    PLoS One. 2017;12:e0170712.
    PubMed     Abstract available

  1212. ESCORIZA D, Ben Hassine J
    Diversity of Guilds of Amphibian Larvae in North-Western Africa.
    PLoS One. 2017;12:e0170763.
    PubMed     Abstract available

  1213. TSURUTA SI, Ebina M, Kobayashi M, Takahashi W, et al
    Complete Chloroplast Genomes of Erianthus arundinaceus and Miscanthus sinensis: Comparative Genomics and Evolution of the Saccharum Complex.
    PLoS One. 2017;12:e0169992.
    PubMed     Abstract available

  1214. CHEN Z, Li Z, Zhuang R, Yuan Y, et al
    Adaptive Estimation of Personalized Maximum Tolerated Dose in Cancer Phase I Clinical Trials Based on All Toxicities and Individual Genomic Profile.
    PLoS One. 2017;12:e0170187.
    PubMed     Abstract available

  1215. CHA S, Srinivasan S, Jang JH, Lee D, et al
    Metagenomic Analysis of Airborne Bacterial Community and Diversity in Seoul, Korea, during December 2014, Asian Dust Event.
    PLoS One. 2017;12:e0170693.
    PubMed     Abstract available

  1216. HWANG J, Park SY, Park M, Lee S, et al
    Seasonal Dynamics and Metagenomic Characterization of Marine Viruses in Goseong Bay, Korea.
    PLoS One. 2017;12:e0169841.
    PubMed     Abstract available

  1217. NIU R, Liu Y, Zhang Y, Zhang Y, et al
    iTRAQ-Based Proteomics Reveals Novel Biomarkers for Idiopathic Pulmonary Fibrosis.
    PLoS One. 2017;12:e0170741.
    PubMed     Abstract available

  1218. HELWA I, Cai J, Drewry MD, Zimmerman A, et al
    A Comparative Study of Serum Exosome Isolation Using Differential Ultracentrifugation and Three Commercial Reagents.
    PLoS One. 2017;12:e0170628.
    PubMed     Abstract available

  1219. DE VRIES PS, Sabater-Lleal M, Chasman DI, Trompet S, et al
    Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.
    PLoS One. 2017;12:e0167742.
    PubMed     Abstract available

  1220. HALLER T, Leitsalu L, Fischer K, Nuotio ML, et al
    MixFit: Methodology for Computing Ancestry-Related Genetic Scores at the Individual Level and Its Application to the Estonian and Finnish Population Studies.
    PLoS One. 2017;12:e0170325.
    PubMed     Abstract available

  1221. SIRIPHAP A, Leekitcharoenphon P, Kaas RS, Theethakaew C, et al
    Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.
    PLoS One. 2017;12:e0169324.
    PubMed     Abstract available

  1222. CHERIFI YA, Gaouar SB, Guastamacchia R, El-Bahrawy KA, et al
    Weak Genetic Structure in Northern African Dromedary Camels Reflects Their Unique Evolutionary History.
    PLoS One. 2017;12:e0168672.
    PubMed     Abstract available

  1223. GONZALEZ-WEVAR CA, Nakano T, Palma A, Poulin E, et al
    Biogeography in Cellana (Patellogastropoda, Nacellidae) with Special Emphasis on the Relationships of Southern Hemisphere Oceanic Island Species.
    PLoS One. 2017;12:e0170103.
    PubMed     Abstract available

  1224. STEBNER F, Szadziewski R, Singh H, Gunkel S, et al
    Biting Midges (Diptera: Ceratopogonidae) from Cambay Amber Indicate that the Eocene Fauna of the Indian Subcontinent Was Not Isolated.
    PLoS One. 2017;12:e0169144.
    PubMed     Abstract available

  1225. YE X, Liu H, Jin Y, Guo M, et al
    Transcriptomic Analysis of Calonectria pseudoreteaudii during Various Stages of Eucalyptus Infection.
    PLoS One. 2017;12:e0169598.
    PubMed     Abstract available

  1226. MANICKAVELU A, Hattori T, Yamaoka S, Yoshimura K, et al
    Genetic Nature of Elemental Contents in Wheat Grains and Its Genomic Prediction: Toward the Effective Use of Wheat Landraces from Afghanistan.
    PLoS One. 2017;12:e0169416.
    PubMed     Abstract available

  1227. PRIYAMVADA H, Akila M, Singh RK, Ravikrishna R, et al
    Terrestrial Macrofungal Diversity from the Tropical Dry Evergreen Biome of Southern India and Its Potential Role in Aerobiology.
    PLoS One. 2017;12:e0169333.
    PubMed     Abstract available

  1228. AGULLO L, Romero-Silva MJ, Domenech M, Seeger M, et al
    p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.
    PLoS One. 2017;12:e0169544.
    PubMed     Abstract available

  1229. HATOUM D, Yagoub D, Ahadi A, Nassif NT, et al
    Annexin/S100A Protein Family Regulation through p14ARF-p53 Activation: A Role in Cell Survival and Predicting Treatment Outcomes in Breast Cancer.
    PLoS One. 2017;12:e0169925.
    PubMed     Abstract available

  1230. WEN HB, Cao ZM, Hua D, Xu P, et al
    The Complete Maternally and Paternally Inherited Mitochondrial Genomes of a Freshwater Mussel Potamilus alatus (Bivalvia: Unionidae).
    PLoS One. 2017;12:e0169749.
    PubMed     Abstract available

  1231. VIRK RK, Gunalan V, Lee HK, Inoue M, et al
    Molecular Evidence of Transmission of Influenza A/H1N1 2009 on a University Campus.
    PLoS One. 2017;12:e0168596.
    PubMed     Abstract available

  1232. STROJAN K, Leonardi A, Bregar VB, Krizaj I, et al
    Dispersion of Nanoparticles in Different Media Importantly Determines the Composition of Their Protein Corona.
    PLoS One. 2017;12:e0169552.
    PubMed     Abstract available

  1233. SIEGWALD L, Touzet H, Lemoine Y, Hot D, et al
    Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.
    PLoS One. 2017;12:e0169563.
    PubMed     Abstract available

  1234. SCHNEIDER A, Matkovich SJ, Victoria B, Spinel L, et al
    Changes of Ovarian microRNA Profile in Long-Living Ames Dwarf Mice during Aging.
    PLoS One. 2017;12:e0169213.
    PubMed     Abstract available

  1235. ASOR E, Stav MY, Simon E, Fahoum I, et al
    Risk for molecular contamination of tissue samples evaluated for targeted anti-cancer therapy.
    PLoS One. 2017;12:e0173760.
    PubMed     Abstract available

  1236. KNITLOVA M, Horacek I
    Late Pleistocene-Holocene paleobiogeography of the genus Apodemus in Central Europe.
    PLoS One. 2017;12:e0173668.
    PubMed     Abstract available

  1237. VARDI O, Shamir I, Javasky E, Goren A, et al
    Biases in the SMART-DNA library preparation method associated with genomic poly dA/dT sequences.
    PLoS One. 2017;12:e0172769.
    PubMed     Abstract available

  1238. FORTI LR, Lingnau R, Encarnacao LC, Bertoluci J, et al
    Can treefrog phylogeographical clades and species' phylogenetic topologies be recovered by bioacoustical analyses?
    PLoS One. 2017;12:e0169911.
    PubMed     Abstract available

  1239. PELLETIER A, Obbard ME, Harnden M, McConnell S, et al
    Determining causes of genetic isolation in a large carnivore (Ursus americanus) population to direct contemporary conservation measures.
    PLoS One. 2017;12:e0172319.
    PubMed     Abstract available

  1240. SHEVCHENKO A, Yang Y, Knaust A, Verbavatz JM, et al
    Open sesame: Identification of sesame oil and oil soot ink in organic deposits of Tang Dynasty lamps from Astana necropolis in China.
    PLoS One. 2017;12:e0158636.
    PubMed     Abstract available

  1241. VEGA-CABRERA LA, Guerrero A, Rodriguez-Mejia JL, Tabche ML, et al
    Analysis of Spo0M function in Bacillus subtilis.
    PLoS One. 2017;12:e0172737.
    PubMed     Abstract available

  1242. GONZALEZ AV, Santelices B
    Frequency of chimerism in populations of the kelp Lessonia spicata in central Chile.
    PLoS One. 2017;12:e0169182.
    PubMed     Abstract available

  1243. UR REHMAN H, Azam N, Yao J, Benso A, et al
    A three-way approach for protein function classification.
    PLoS One. 2017;12:e0171702.
    PubMed     Abstract available

  1244. KUZNIAR A, Laffeber C, Eppink B, Bezstarosti K, et al
    Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields.
    PLoS One. 2017;12:e0170762.
    PubMed     Abstract available

  1245. CHO YE, Im EJ, Moon PG, Mezey E, et al
    Increased liver-specific proteins in circulating extracellular vesicles as potential biomarkers for drug- and alcohol-induced liver injury.
    PLoS One. 2017;12:e0172463.
    PubMed     Abstract available

  1246. IJAZ UZ, Quince C, Hanske L, Loman N, et al
    The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.
    PLoS One. 2017;12:e0172605.
    PubMed     Abstract available

  1247. LI S, Li D, Zhao X, Wang Y, et al
    A non-synonymous SNP with the allele frequency correlated with the altitude may contribute to the hypoxia adaptation of Tibetan chicken.
    PLoS One. 2017;12:e0172211.
    PubMed     Abstract available

  1248. QIN L, Liu X, Liu S, Liu Y, et al
    Differentially expressed proteins underlying childhood cortical dysplasia with epilepsy identified by iTRAQ proteomic profiling.
    PLoS One. 2017;12:e0172214.
    PubMed     Abstract available

  1249. DUAN X, Wang K, Su S, Tian R, et al
    De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae).
    PLoS One. 2017;12:e0172513.
    PubMed     Abstract available

  1250. LU X, Kang X, Liu Y, Cui Z, et al
    HIV-1 molecular epidemiology among newly diagnosed HIV-1 individuals in Hebei, a low HIV prevalence province in China.
    PLoS One. 2017;12:e0171481.
    PubMed     Abstract available

  1251. TAYABALI AF, Coleman G, Crosthwait J, Nguyen KC, et al
    Composition and pathogenic potential of a microbial bioremediation product used for crude oil degradation.
    PLoS One. 2017;12:e0171911.
    PubMed     Abstract available

  1252. LIMA DF, de Lima LI, Rocha JA, de Andrade IM, et al
    Seasonal change in main alkaloids of jaborandi (Pilocarpus microphyllus Stapf ex Wardleworth), an economically important species from the Brazilian flora.
    PLoS One. 2017;12:e0170281.
    PubMed     Abstract available

  1253. WAIHO K, Fazhan H, Shahreza MS, Moh JH, et al
    Transcriptome Analysis and Differential Gene Expression on the Testis of Orange Mud Crab, Scylla olivacea, during Sexual Maturation.
    PLoS One. 2017;12:e0171095.
    PubMed     Abstract available

  1254. ZHANG X, Mu Y, Mu P, Ao J, et al
    Transcriptome Analysis Reveals Comprehensive Insights into the Early Immune Response of Large Yellow Croaker (Larimichthys crocea) Induced by Trivalent Bacterial Vaccine.
    PLoS One. 2017;12:e0170958.
    PubMed     Abstract available

  1255. N'DIAYE A, Haile JK, Cory AT, Clarke FR, et al
    Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.
    PLoS One. 2017;12:e0170941.
    PubMed     Abstract available

  1256. ANGELONE-ALASAAD S, Biebach I, Perez JM, Soriguer RC, et al
    Molecular Analyses Reveal Unexpected Genetic Structure in Iberian Ibex Populations.
    PLoS One. 2017;12:e0170827.
    PubMed     Abstract available

  1257. SOLLANEK KJ, Burniston JG, Kavazis AN, Morton AB, et al
    Global Proteome Changes in the Rat Diaphragm Induced by Endurance Exercise Training.
    PLoS One. 2017;12:e0171007.
    PubMed     Abstract available

  1258. HUANG X, Zang X, Wu F, Jin Y, et al
    Transcriptome Sequencing of Gracilariopsis lemaneiformis to Analyze the Genes Related to Optically Active Phycoerythrin Synthesis.
    PLoS One. 2017;12:e0170855.
    PubMed     Abstract available

  1259. ZHANG D, Xia X, Wang X, Zhang P, et al
    PGRMC1 Is a Novel Potential Tumor Biomarker of Human Renal Cell Carcinoma Based on Quantitative Proteomic and Integrative Biological Assessments.
    PLoS One. 2017;12:e0170453.
    PubMed     Abstract available

  1260. PANTOJA-MELENDEZ CA, Miranda-Duarte A, Roque-Ramirez B, Zenteno JC, et al
    Epidemiological and Molecular Characterization of a Mexican Population Isolate with High Prevalence of Limb-Girdle Muscular Dystrophy Type 2A Due to a Novel Calpain-3 Mutation.
    PLoS One. 2017;12:e0170280.
    PubMed     Abstract available

  1261. RODRIGUES RT, Chizzotti ML, Vital CE, Baracat-Pereira MC, et al
    Differences in Beef Quality between Angus (Bos taurus taurus) and Nellore (Bos taurus indicus) Cattle through a Proteomic and Phosphoproteomic Approach.
    PLoS One. 2017;12:e0170294.
    PubMed     Abstract available

  1262. CHO IT, Lim Y, Golden JA, Cho G, et al
    Aristaless Related Homeobox (ARX) Interacts with beta-Catenin, BCL9, and P300 to Regulate Canonical Wnt Signaling.
    PLoS One. 2017;12:e0170282.
    PubMed     Abstract available

  1263. HJELMSO MH, Hellmer M, Fernandez-Cassi X, Timoneda N, et al
    Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing.
    PLoS One. 2017;12:e0170199.
    PubMed     Abstract available

  1264. HE C, Fu J, Zhang J, Li Y, et al
    A Gene-Oriented Haplotype Comparison Reveals Recently Selected Genomic Regions in Temperate and Tropical Maize Germplasm.
    PLoS One. 2017;12:e0169806.
    PubMed     Abstract available

  1265. VOLLMERS J, Wiegand S, Kaster AK
    Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!
    PLoS One. 2017;12:e0169662.
    PubMed     Abstract available

  1266. VESTY A, Biswas K, Taylor MW, Gear K, et al
    Evaluating the Impact of DNA Extraction Method on the Representation of Human Oral Bacterial and Fungal Communities.
    PLoS One. 2017;12:e0169877.
    PubMed     Abstract available

  1267. YANG Y, Lian S, Meng L, Qu L, et al
    Antibody Array Revealed PRL-3 Affects Protein Phosphorylation and Cytokine Secretion.
    PLoS One. 2017;12:e0169665.
    PubMed     Abstract available

  1268. GELIN P, Fauvelot C, Mehn V, Bureau S, et al
    Superclone Expansion, Long-Distance Clonal Dispersal and Local Genetic Structuring in the Coral Pocillopora damicornis Type beta in Reunion Island, South Western Indian Ocean.
    PLoS One. 2017;12:e0169692.
    PubMed     Abstract available

  1269. GUARINO MP, Altomare A, Barera S, Locato V, et al
    Effect of Inulin on Proteome Changes Induced by Pathogenic Lipopolysaccharide in Human Colon.
    PLoS One. 2017;12:e0169481.
    PubMed     Abstract available

  1270. BIAZZI E, Nazzicari N, Pecetti L, Brummer EC, et al
    Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits.
    PLoS One. 2017;12:e0169234.
    PubMed     Abstract available

  1271. ORTIZ ME, Bleckwedel J, Fadda S, Picariello G, et al
    Global Analysis of Mannitol 2-Dehydrogenase in Lactobacillus reuteri CRL 1101 during Mannitol Production through Enzymatic, Genetic and Proteomic Approaches.
    PLoS One. 2017;12:e0169441.
    PubMed     Abstract available

  1272. HAN Z, Kautto L, Nevalainen H
    Secretion of Proteases by an Opportunistic Fungal Pathogen Scedosporium aurantiacum.
    PLoS One. 2017;12:e0169403.
    PubMed     Abstract available

  1273. HOFF ML, Fabrizius A, Czech-Damal NU, Folkow LP, et al
    Transcriptome Analysis Identifies Key Metabolic Changes in the Hooded Seal (Cystophora cristata) Brain in Response to Hypoxia and Reoxygenation.
    PLoS One. 2017;12:e0169366.
    PubMed     Abstract available

  1274. KUO HW, Shih CL, Tsung JH, Liu SW, et al
    Pharmacogenomics study on cadherin 2 network with regard to HIV infection and methadone treatment outcome.
    PLoS One. 2017;12:e0174647.
    PubMed     Abstract available

  1275. QIN Y, Djabou AS, An F, Li K, et al
    Proteomic analysis of injured storage roots in cassava (Manihot esculenta Crantz) under postharvest physiological deterioration.
    PLoS One. 2017;12:e0174238.
    PubMed     Abstract available

  1276. ARMERO A, Baudouin L, Bocs S, This D, et al
    Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.
    PLoS One. 2017;12:e0173300.
    PubMed     Abstract available

  1277. EIRIN A, Zhu XY, Puranik AS, Woollard JR, et al
    Integrated transcriptomic and proteomic analysis of the molecular cargo of extracellular vesicles derived from porcine adipose tissue-derived mesenchymal stem cells.
    PLoS One. 2017;12:e0174303.
    PubMed     Abstract available

  1278. HOLMILA R, Sklias A, Muller DC, Degli Esposti D, et al
    Targeted deep sequencing of plasma circulating cell-free DNA reveals Vimentin and Fibulin 1 as potential epigenetic biomarkers for hepatocellular carcinoma.
    PLoS One. 2017;12:e0174265.
    PubMed     Abstract available

  1279. LOWDON RF, Wang T
    Epigenomic annotation of noncoding mutations identifies mutated pathways in primary liver cancer.
    PLoS One. 2017;12:e0174032.
    PubMed     Abstract available

  1280. NAGA PRASAD SV, Gupta MK, Duan ZH, Surampudi VS, et al
    A unique microRNA profile in end-stage heart failure indicates alterations in specific cardiovascular signaling networks.
    PLoS One. 2017;12:e0170456.
    PubMed     Abstract available

  1281. GUAYASAMIN JM, Hutter CR, Tapia EE, Culebras J, et al
    Diversification of the rainfrog Pristimantis ornatissimus in the lowlands and Andean foothills of Ecuador.
    PLoS One. 2017;12:e0172615.
    PubMed     Abstract available

  1282. MCDOUGALL CA, Welsh AB, Gosselin T, Anderson WG, et al
    Rethinking the influence of hydroelectric development on gene flow in a long-lived fish, the Lake Sturgeon Acipenser fulvescens.
    PLoS One. 2017;12:e0174269.
    PubMed     Abstract available

  1283. GANTUZ M, Lorenzetti MA, Chabay PA, Preciado MV, et al
    A novel recombinant variant of latent membrane protein 1 from Epstein Barr virus in Argentina denotes phylogeographical association.
    PLoS One. 2017;12:e0174221.
    PubMed     Abstract available

  1284. QI H, Song K, Li C, Wang W, et al
    Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas).
    PLoS One. 2017;12:e0174007.
    PubMed     Abstract available

  1285. HATTHAKAROON C, Pharkjaksu S, Chongtrakool P, Suwannakarn K, et al
    Molecular epidemiology of cryptococcal genotype VNIc/ST5 in Siriraj Hospital, Thailand.
    PLoS One. 2017;12:e0173744.
    PubMed     Abstract available

  1286. CHI W, Gao Y, Hu Q, Guo W, et al
    Genome-wide analysis of brain and gonad transcripts reveals changes of key sex reversal-related genes expression and signaling pathways in three stages of Monopterus albus.
    PLoS One. 2017;12:e0173974.
    PubMed     Abstract available

  1287. CHEN PC, Shih CH, Chu TJ, Lee YC, et al
    Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia.
    PLoS One. 2017;12:e0173490.
    PubMed     Abstract available

  1288. HE S, Wang H, Liu R, He M, et al
    mRNA N6-methyladenosine methylation of postnatal liver development in pig.
    PLoS One. 2017;12:e0173421.
    PubMed     Abstract available

  1289. PFEIFFER W, Braun J, Burchell J, Witte CL, et al
    Whole-genome analysis of mycobacteria from birds at the San Diego Zoo.
    PLoS One. 2017;12:e0173464.
    PubMed     Abstract available

  1290. KANG Z, Zhang X, Ding S, Tang C, et al
    Transcriptomes of three species of Tipuloidea (Diptera, Tipulomorpha) and implications for phylogeny of Tipulomorpha.
    PLoS One. 2017;12:e0173207.
    PubMed     Abstract available

  1291. ZHOU T, Souzeau E, Sharma S, Landers J, et al
    Whole exome sequencing implicates eye development, the unfolded protein response and plasma membrane homeostasis in primary open-angle glaucoma.
    PLoS One. 2017;12:e0172427.
    PubMed     Abstract available

  1292. POLLEGIONI P, Woeste K, Chiocchini F, Del Lungo S, et al
    Rethinking the history of common walnut (Juglans regia L.) in Europe: Its origins and human interactions.
    PLoS One. 2017;12:e0172541.
    PubMed     Abstract available

  1293. ELDRIDGE MD, Miller EJ, Neaves LE, Zenger KR, et al
    Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii).
    PLoS One. 2017;12:e0172777.
    PubMed     Abstract available

  1294. LI R, Chen D, Wang T, Wan Y, et al
    High throughput deep degradome sequencing reveals microRNAs and their targets in response to drought stress in mulberry (Morus alba).
    PLoS One. 2017;12:e0172883.
    PubMed     Abstract available

  1295. MUNOZ S, Guerrero FD, Kellogg A, Heekin AM, et al
    Bioinformatic prediction of G protein-coupled receptor encoding sequences from the transcriptome of the foreleg, including the Haller's organ, of the cattle tick, Rhipicephalus australis.
    PLoS One. 2017;12:e0172326.
    PubMed     Abstract available

  1296. RUDQVIST N, Spetz J, Schuler E, Parris TZ, et al
    Transcriptional response to 131I exposure of rat thyroid gland.
    PLoS One. 2017;12:e0171797.
    PubMed     Abstract available

  1297. ZHU C, Pan Z, Wang H, Chang G, et al
    De novo assembly, characterization and annotation for the transcriptome of Sarcocheilichthys sinensis.
    PLoS One. 2017;12:e0171966.
    PubMed     Abstract available

  1298. RIZWAN M, Aslam M, Asghar MJ, Abbas G, et al
    Pre-breeding of lentil (Lens culinaris Medik.) for herbicide resistance through seed mutagenesis.
    PLoS One. 2017;12:e0171846.
    PubMed     Abstract available

  1299. WU B, Hu Y, Huo P, Zhang Q, et al
    Transcriptome analysis of hexaploid hulless oat in response to salinity stress.
    PLoS One. 2017;12:e0171451.
    PubMed     Abstract available

  1300. ZYCH K, Snoek BL, Elvin M, Rodriguez M, et al
    reGenotyper: Detecting mislabeled samples in genetic data.
    PLoS One. 2017;12:e0171324.
    PubMed     Abstract available

  1301. BACKMAN TW, Evans DS, Girke T
    Large-scale bioactivity analysis of the small-molecule assayed proteome.
    PLoS One. 2017;12:e0171413.
    PubMed     Abstract available

  1302. MASSAFRA V, Milona A, Vos HR, Burgering BM, et al
    Quantitative liver proteomics identifies FGF19 targets that couple metabolism and proliferation.
    PLoS One. 2017;12:e0171185.
    PubMed     Abstract available

  1303. OMIDVAR V, Mohorianu I, Dalmay T, Zheng Y, et al
    Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant.
    PLoS One. 2017;12:e0170715.
    PubMed     Abstract available

  1304. BAI S, Chen H, Zhu L, Liu W, et al
    Comparative study on the in vitro effects of Pseudomonas aeruginosa and seaweed alginates on human gut microbiota.
    PLoS One. 2017;12:e0171576.
    PubMed     Abstract available

  1305. YANG MQ, Li DZ, Wen J, Yi TS, et al
    Phylogeny and biogeography of the amphi-Pacific genus Aphananthe.
    PLoS One. 2017;12:e0171405.
    PubMed     Abstract available

  1306. POLANSKI A, Szczesna A, Garbulowski M, Kimmel M, et al
    Coalescence computations for large samples drawn from populations of time-varying sizes.
    PLoS One. 2017;12:e0170701.
    PubMed     Abstract available

  1307. COX MJ, Turek EM, Hennessy C, Mirza GK, et al
    Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients.
    PLoS One. 2017;12:e0170622.
    PubMed     Abstract available

  1308. VON SALTZWEDEL H, Scheu S, Schaefer I
    Genetic structure and distribution of Parisotoma notabilis (Collembola) in Europe: Cryptic diversity, split of lineages and colonization patterns.
    PLoS One. 2017;12:e0170909.
    PubMed     Abstract available

  1309. REYNAUD Y, Zheng C, Wu G, Sun Q, et al
    Bayesian population structure analysis reveals presence of phylogeographically specific sublineages within previously ill-defined T group of Mycobacterium tuberculosis.
    PLoS One. 2017;12:e0171584.
    PubMed     Abstract available

  1310. HUANG N, Wang W, Yao Y, Zhu F, et al
    The influence of different concentrations of bio-organic fertilizer on cucumber Fusarium wilt and soil microflora alterations.
    PLoS One. 2017;12:e0171490.
    PubMed     Abstract available

  1311. ZOU Z, Liu J, Yang L, Xie G, et al
    Survey of the rubber tree genome reveals a high number of cysteine protease-encoding genes homologous to Arabidopsis SAG12.
    PLoS One. 2017;12:e0171725.
    PubMed     Abstract available

  1312. VAN GOOR A, Ashwell CM, Persia ME, Rothschild MF, et al
    Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat.
    PLoS One. 2017;12:e0171414.
    PubMed     Abstract available

  1313. ZUO LH, Shang AQ, Zhang S, Yu XY, et al
    The first complete chloroplast genome sequences of Ulmus species by de novo sequencing: Genome comparative and taxonomic position analysis.
    PLoS One. 2017;12:e0171264.
    PubMed     Abstract available

  1314. LEE MY, Park C, Ha SE, Park PJ, et al
    Serum response factor regulates smooth muscle contractility via myotonic dystrophy protein kinases and L-type calcium channels.
    PLoS One. 2017;12:e0171262.
    PubMed     Abstract available

  1315. MARTINS CO, Demarchi L, Ferreira FM, Pomerantzeff PM, et al
    Rheumatic Heart Disease and Myxomatous Degeneration: Differences and Similarities of Valve Damage Resulting from Autoimmune Reactions and Matrix Disorganization.
    PLoS One. 2017;12:e0170191.
    PubMed     Abstract available

  1316. VILA M, Hermida M, Fernandez C, Perea S, et al
    Phylogeography and Conservation Genetics of the Ibero-Balearic Three-Spined Stickleback (Gasterosteus aculeatus).
    PLoS One. 2017;12:e0170685.
    PubMed     Abstract available

  1317. EBERHARDT C, Thillai M, Parker R, Siddiqui N, et al
    Proteomic Analysis of Kveim Reagent Identifies Targets of Cellular Immunity in Sarcoidosis.
    PLoS One. 2017;12:e0170285.
    PubMed     Abstract available

  1318. WANG H, Zhao S, Gao Y, Yang J, et al
    Characterization of Dof Transcription Factors and Their Responses to Osmotic Stress in Poplar (Populus trichocarpa).
    PLoS One. 2017;12:e0170210.
    PubMed     Abstract available

  1319. FRAIJA-FERNANDEZ N, Fernandez M, Lehnert K, Raga JA, et al
    Long-Distance Travellers: Phylogeography of a Generalist Parasite, Pholeter gastrophilus, from Cetaceans.
    PLoS One. 2017;12:e0170184.
    PubMed     Abstract available

  1320. WOO HJ, Yu C, Reifman J
    Collective Genetic Interaction Effects and the Role of Antigen-Presenting Cells in Autoimmune Diseases.
    PLoS One. 2017;12:e0169918.
    PubMed     Abstract available

  1321. GRANT LR, O'Brien KL, Weatherholtz RC, Reid R, et al
    Norovirus and Sapovirus Epidemiology and Strain Characteristics among Navajo and Apache Infants.
    PLoS One. 2017;12:e0169491.
    PubMed     Abstract available

  1322. XI Y, Jiao W, Cao J, Jiang W, et al
    Effects of chlorogenic acid on capacity of free radicals scavenging and proteomic changes in postharvest fruit of nectarine.
    PLoS One. 2017;12:e0182494.
    PubMed     Abstract available

  1323. KUMAR S, Subbarao BL, Kumari R, Hallan V, et al
    Molecular characterization of a novel cryptic virus infecting pigeonpea plants.
    PLoS One. 2017;12:e0181829.
    PubMed     Abstract available

  1324. ANEL-LOPEZ L, Ortega-Ferrusola C, Martinez-Rodriguez C, Alvarez M, et al
    Analysis of seminal plasma from brown bear (Ursus arctos) during the breeding season: Its relationship with testosterone levels.
    PLoS One. 2017;12:e0181776.
    PubMed     Abstract available

  1325. DHARMAYANTHI AB, Terai Y, Sulandari S, Zein MS, et al
    The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.
    PLoS One. 2017;12:e0173147.
    PubMed     Abstract available

  1326. LLUVERAS-TENORIO A, Vinciguerra R, Galano E, Blaensdorf C, et al
    GC/MS and proteomics to unravel the painting history of the lost Giant Buddhas of Bamiyan (Afghanistan).
    PLoS One. 2017;12:e0172990.
    PubMed     Abstract available

  1327. RUTKOWSKI R, Zawadzka D, Suchecka E, Merta D, et al
    Conservation genetics of the capercaillie in Poland - Delineation of conservation units.
    PLoS One. 2017;12:e0174901.
    PubMed     Abstract available

  1328. EDWARDS RD, Crisp MD, Cook DH, Cook LG, et al
    Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics.
    PLoS One. 2017;12:e0174812.
    PubMed     Abstract available

  1329. SUN Y, Guo W, Wang F, Zhan C, et al
    Transcriptome analysis of Corynebacterium glutamicum in the process of recombinant protein expression in bioreactors.
    PLoS One. 2017;12:e0174824.
    PubMed     Abstract available

  1330. GUINOISEAU T, Moreau A, Hohnadel G, Ngo-Giang-Huong N, et al
    Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification.
    PLoS One. 2017;12:e0174852.
    PubMed     Abstract available

  1331. PELLON A, Ramirez-Garcia A, Buldain I, Antoran A, et al
    Molecular and cellular responses of the pathogenic fungus Lomentospora prolificans to the antifungal drug voriconazole.
    PLoS One. 2017;12:e0174885.
    PubMed     Abstract available

  1332. LI Y, Urban A, Midura D, Simon HG, et al
    Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-kappaB in epicardial EMT.
    PLoS One. 2017;12:e0174563.
    PubMed     Abstract available

  1333. LI Y, Morrow J, Raby B, Tantisira K, et al
    Detecting disease-associated genomic outcomes using constrained mixture of Bayesian hierarchical models for paired data.
    PLoS One. 2017;12:e0174602.
    PubMed     Abstract available

  1334. DECAP D, Reumers J, Herzeel C, Costanza P, et al
    Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.
    PLoS One. 2017;12:e0174575.
    PubMed     Abstract available

  1335. MEINERT C, Brandt U, Heine V, Beyert J, et al
    Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.
    PLoS One. 2017;12:e0174256.
    PubMed     Abstract available

  1336. ARNAU G, Bhattacharjee R, Mn S, Chair H, et al
    Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.
    PLoS One. 2017;12:e0174150.
    PubMed     Abstract available

  1337. WARD LJ, Ljunggren SA, Karlsson H, Li W, et al
    Exposure to atheroma-relevant 7-oxysterols causes proteomic alterations in cell death, cellular longevity, and lipid metabolism in THP-1 macrophages.
    PLoS One. 2017;12:e0174475.
    PubMed     Abstract available

  1338. ZOU B, Li J, Zhou Q, Quan ZX, et al
    MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
    PLoS One. 2017;12:e0174609.
    PubMed     Abstract available

  1339. MARROTTE RR, Bowman J
    The relationship between least-cost and resistance distance.
    PLoS One. 2017;12:e0174212.
    PubMed     Abstract available

  1340. BYRUM SD, Burdine MS, Orr L, Mackintosh SG, et al
    Time- and radiation-dose dependent changes in the plasma proteome after total body irradiation of non-human primates: Implications for biomarker selection.
    PLoS One. 2017;12:e0174771.
    PubMed     Abstract available

  1341. WOOD LE, De Grave S, Daniels SR
    Phylogeographic patterning among two codistributed shrimp species (Crustacea: Decapoda: Palaemonidae) reveals high levels of connectivity across biogeographic regions along the South African coast.
    PLoS One. 2017;12:e0173356.
    PubMed     Abstract available

  1342. PAGES-MONTEIRO L, Marti R, Commun C, Alliot N, et al
    Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa.
    PLoS One. 2017;12:e0173022.
    PubMed     Abstract available

  1343. REZNICK DN, Furness AI, Meredith RW, Springer MS, et al
    The origin and biogeographic diversification of fishes in the family Poeciliidae.
    PLoS One. 2017;12:e0172546.
    PubMed     Abstract available

  1344. WANG Z, Fan G, Dong Y, Zhai X, et al
    Implications of polyploidy events on the phenotype, microstructure, and proteome of Paulownia australis.
    PLoS One. 2017;12:e0172633.
    PubMed     Abstract available

  1345. CHENG J, Romantsov T, Engel K, Doxey AC, et al
    Functional metagenomics reveals novel beta-galactosidases not predictable from gene sequences.
    PLoS One. 2017;12:e0172545.
    PubMed     Abstract available

  1346. PERUMAL N, Manicam C, Steinicke M, Funke S, et al
    Characterization of the human aqueous humour proteome: A comparison of the genders.
    PLoS One. 2017;12:e0172481.
    PubMed     Abstract available

  1347. HTUN NM, Magliano DJ, Zhang ZY, Lyons J, et al
    Prediction of acute coronary syndromes by urinary proteome analysis.
    PLoS One. 2017;12:e0172036.
    PubMed     Abstract available

  1348. GEBHARDT MJ, Jacobson RK, Shuman HA
    Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria.
    PLoS One. 2017;12:e0173116.
    PubMed     Abstract available

  1349. NAKAOKA T, Iga M, Yamada T, Koujima I, et al
    Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.
    PLoS One. 2017;12:e0172951.
    PubMed     Abstract available

  1350. BATISTA ME, Silva DD, Sales MA, Sa AA, et al
    New data on the stem and leaf anatomy of two conifers from the Lower Cretaceous of the Araripe Basin, northeastern Brazil, and their taxonomic and paleoecological implications.
    PLoS One. 2017;12:e0173090.
    PubMed     Abstract available

  1351. BRYANT AE, Aldape MJ, Bayer CR, Katahira EJ, et al
    Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study.
    PLoS One. 2017;12:e0172486.
    PubMed     Abstract available

  1352. BENEVENUTO RF, Agapito-Tenfen SZ, Vilperte V, Wikmark OG, et al
    Molecular responses of genetically modified maize to abiotic stresses as determined through proteomic and metabolomic analyses.
    PLoS One. 2017;12:e0173069.
    PubMed     Abstract available

  1353. PRICE A, Garhyan J, Gibas C
    The impact of RNA secondary structure on read start locations on the Illumina sequencing platform.
    PLoS One. 2017;12:e0173023.
    PubMed     Abstract available

  1354. FOSCHI C, Laghi L, Parolin C, Giordani B, et al
    Novel approaches for the taxonomic and metabolic characterization of lactobacilli: Integration of 16S rRNA gene sequencing with MALDI-TOF MS and 1H-NMR.
    PLoS One. 2017;12:e0172483.
    PubMed     Abstract available

  1355. VARGAS-CARO C, Bustamante C, Bennett MB, Ovenden JR, et al
    Towards sustainable fishery management for skates in South America: The genetic population structure of Zearaja chilensis and Dipturus trachyderma (Chondrichthyes, Rajiformes) in the south-east Pacific Ocean.
    PLoS One. 2017;12:e0172255.
    PubMed     Abstract available

  1356. SERGEANT K, Printz B, Gutsch A, Behr M, et al
    Didehydrophenylalanine, an abundant modification in the beta subunit of plant polygalacturonases.
    PLoS One. 2017;12:e0171990.
    PubMed     Abstract available

  1357. WANG R, Cui Y, Xu Y, Irudayaraj J, et al
    Basic studies on epigenetic carcinogenesis of low-dose exposure to 1-trichloromethyl-1,2,3,4-tetrahydro-beta-carboline (TaClo) in vitro.
    PLoS One. 2017;12:e0172243.
    PubMed     Abstract available

  1358. KAMFWA K, Zhao D, Kelly JD, Cichy KA, et al
    Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation.
    PLoS One. 2017;12:e0172141.
    PubMed     Abstract available

  1359. PARK YJ, Koh J, Kwon JT, Park YS, et al
    Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes.
    PLoS One. 2017;12:e0169677.
    PubMed     Abstract available

  1360. SAKAKI M, Ebihara Y, Okamura K, Nakabayashi K, et al
    Potential roles of DNA methylation in the initiation and establishment of replicative senescence revealed by array-based methylome and transcriptome analyses.
    PLoS One. 2017;12:e0171431.
    PubMed     Abstract available

  1361. LI YH, Wang HP, Yao H, O'Bryant P, et al
    De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens.
    PLoS One. 2017;12:e0171187.
    PubMed     Abstract available

  1362. HAMILTON SL, Logan CA, Fennie HW, Sogard SM, et al
    Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics.
    PLoS One. 2017;12:e0169670.
    PubMed     Abstract available

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    Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
    PLoS One. 2017;12:e0169249.
    PubMed     Abstract available

  1364. BEISSER D, Kaschani F, Graupner N, Grossmann L, et al
    Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.
    PLoS One. 2017;12:e0168183.
    PubMed     Abstract available

  1365. NANDAKUMAR P, Tin A, Grove ML, Ma J, et al
    MicroRNAs in the miR-17 and miR-15 families are downregulated in chronic kidney disease with hypertension.
    PLoS One. 2017;12:e0176734.
    PubMed     Abstract available

  1366. CLARKE B, Mahapatra M, Friedgut O, Bumbarov V, et al
    Persistence of Lineage IV Peste-des-petits ruminants virus within Israel since 1993: An evolutionary perspective.
    PLoS One. 2017;12:e0177028.
    PubMed     Abstract available

  1367. SONG J, Hu Y, Li J, Zheng H, et al
    Different microRNA profiles reveal the diverse outcomes induced by EV71 and CA16 infection in human umbilical vein endothelial cells using high-throughput sequencing.
    PLoS One. 2017;12:e0177657.
    PubMed     Abstract available

    Recent evolutionary history of Chrysoperla externa (Hagen 1861) (Neuroptera: Chrysopidae) in Brazil.
    PLoS One. 2017;12:e0177414.
    PubMed     Abstract available

  1369. CARRERAS-PLANELLA L, Soler-Majoral J, Rubio-Esteve C, Lozano-Ramos SI, et al
    Characterization and proteomic profile of extracellular vesicles from peritoneal dialysis efflux.
    PLoS One. 2017;12:e0176987.
    PubMed     Abstract available

  1370. KARAH N, Jolley KA, Hall RM, Uhlin BE, et al
    Database for the ampC alleles in Acinetobacter baumannii.
    PLoS One. 2017;12:e0176695.
    PubMed     Abstract available

  1371. ZHU Y, Zhou G, Yu X, Xu Q, et al
    LC-MS-MS quantitative analysis reveals the association between FTO and DNA methylation.
    PLoS One. 2017;12:e0175849.
    PubMed     Abstract available

  1372. RODRIGUES J, Viegas W, Silva M
    45S rDNA external transcribed spacer organization reveals new phylogenetic relationships in Avena genus.
    PLoS One. 2017;12:e0176170.
    PubMed     Abstract available

  1373. WANG J, Pei L, Jin Z, Zhang K, et al
    Overexpression of the protein phosphatase 2A regulatory subunit a gene ZmPP2AA1 improves low phosphate tolerance by remodeling the root system architecture of maize.
    PLoS One. 2017;12:e0176538.
    PubMed     Abstract available

  1374. YARYGIN K, Tyakht A, Larin A, Kostryukova E, et al
    Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses.
    PLoS One. 2017;12:e0176154.
    PubMed     Abstract available

  1375. RAYMOND CK, Hernandez J, Karr R, Hill K, et al
    Collection of cell-free DNA for genomic analysis of solid tumors in a clinical laboratory setting.
    PLoS One. 2017;12:e0176241.
    PubMed     Abstract available

  1376. RUEDA-ZARATE HA, Imaz-Rosshandler I, Cardenas-Ovando RA, Castillo-Fernandez JE, et al
    A computational toxicogenomics approach identifies a list of highly hepatotoxic compounds from a large microarray database.
    PLoS One. 2017;12:e0176284.
    PubMed     Abstract available

  1377. NAOUR S, Espinoza BM, Aedo JE, Zuloaga R, et al
    Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis.
    PLoS One. 2017;12:e0176447.
    PubMed     Abstract available

  1378. BARUAH IK, Panda D, M V J, Das DJ, et al
    Bruchid egg induced transcript dynamics in developing seeds of black gram (Vigna mungo).
    PLoS One. 2017;12:e0176337.
    PubMed     Abstract available

  1379. ROOMP K, Kristinsson H, Schvartz D, Ubhayasekera K, et al
    Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism.
    PLoS One. 2017;12:e0176391.
    PubMed     Abstract available

  1380. FUKUDA T, Nomura M, Kato Y, Tojo H, et al
    A selected reaction monitoring mass spectrometric assessment of biomarker candidates diagnosing large-cell neuroendocrine lung carcinoma by the scaling method using endogenous references.
    PLoS One. 2017;12:e0176219.
    PubMed     Abstract available

  1381. NORONHA FERNANDES-BRUM C, Marinho Rezende P, Cherubino Ribeiro TH, Ricon de Oliveira R, et al
    A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms.
    PLoS One. 2017;12:e0176333.
    PubMed     Abstract available

  1382. JEONG C, Peter BM, Basnyat B, Neupane M, et al
    A longitudinal cline characterizes the genetic structure of human populations in the Tibetan plateau.
    PLoS One. 2017;12:e0175885.
    PubMed     Abstract available

  1383. VIANA MVC, Figueiredo H, Ramos R, Guimaraes LC, et al
    Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.
    PLoS One. 2017;12:e0176347.
    PubMed     Abstract available

  1384. ONUKI R, Yamaguchi R, Shibuya T, Kanehisa M, et al
    Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks.
    PLoS One. 2017;12:e0176530.
    PubMed     Abstract available

  1385. WELINDER C, Pawlowski K, Szasz AM, Yakovleva M, et al
    Correlation of histopathologic characteristics to protein expression and function in malignant melanoma.
    PLoS One. 2017;12:e0176167.
    PubMed     Abstract available

  1386. SINGH SK, Aspi J, Kvist L, Sharma R, et al
    Fine-scale population genetic structure of the Bengal tiger (Panthera tigris tigris) in a human-dominated western Terai Arc Landscape, India.
    PLoS One. 2017;12:e0174371.
    PubMed     Abstract available

  1387. SALEHE BR, Jones CI, Di Fatta G, McGuffin LJ, et al
    RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses.
    PLoS One. 2017;12:e0175957.
    PubMed     Abstract available

  1388. NAVARRO G, Martinez-Pinilla E, Sanchez-Melgar A, Ortiz R, et al
    A genomics approach identifies selective effects of trans-resveratrol in cerebral cortex neuron and glia gene expression.
    PLoS One. 2017;12:e0176067.
    PubMed     Abstract available

  1389. OH J, Lee S, Lee H, Cho JY, et al
    The novel carboxylesterase 1 variant c.662A>G may decrease the bioactivation of oseltamivir in humans.
    PLoS One. 2017;12:e0176320.
    PubMed     Abstract available

  1390. FRANCOIS L, Wijnrocx K, Colinet FG, Gengler N, et al
    Genomics of a revived breed: Case study of the Belgian campine cattle.
    PLoS One. 2017;12:e0175916.
    PubMed     Abstract available

  1391. LI YZ, Fan XW, Chen Q, Zhong H, et al
    A photoperiod-responsive protein compendium and conceptual proteome roadmap outline in maize grown in growth chambers with controlled conditions.
    PLoS One. 2017;12:e0174003.
    PubMed     Abstract available

  1392. LV J, Zhang L, Liu P, Li J, et al
    Transcriptomic variation of eyestalk reveals the genes and biological processes associated with molting in Portunus trituberculatus.
    PLoS One. 2017;12:e0175315.
    PubMed     Abstract available

  1393. MURPHY SN, Avillach P, Bellazzi R, Phillips L, et al
    Combining clinical and genomics queries using i2b2 - Three methods.
    PLoS One. 2017;12:e0172187.
    PubMed     Abstract available

  1394. MARITZ JM, Sullivan SA, Prill RJ, Aksoy E, et al
    Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.
    PLoS One. 2017;12:e0175527.
    PubMed     Abstract available

  1395. RIBEIRO MM, Piotti A, Ricardo A, Gaspar D, et al
    Genetic diversity and divergence at the Arbutus unedo L. (Ericaceae) westernmost distribution limit.
    PLoS One. 2017;12:e0175239.
    PubMed     Abstract available

  1396. LUDINGTON WB, Seher TD, Applegate O, Li X, et al
    Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater.
    PLoS One. 2017;12:e0174930.
    PubMed     Abstract available

  1397. WEI LH, Yan S, Teo YY, Huang YZ, et al
    Phylogeography of Y-chromosome haplogroup O3a2b2-N6 reveals patrilineal traces of Austronesian populations on the eastern coastal regions of Asia.
    PLoS One. 2017;12:e0175080.
    PubMed     Abstract available

  1398. ZHANG LJ, Cai WZ, Luo JY, Zhang S, et al
    Phylogeographic patterns of Lygus pratensis (Hemiptera: Miridae): Evidence for weak genetic structure and recent expansion in northwest China.
    PLoS One. 2017;12:e0174712.
    PubMed     Abstract available

  1399. NICHOLAS A, Kim YK, Lee WK, Selasi GN, et al
    Molecular epidemiology and antimicrobial susceptibility of Clostridium difficile isolates from two Korean hospitals.
    PLoS One. 2017;12:e0174716.
    PubMed     Abstract available

  1400. WAN X, Zhao X, Yau SS
    An information-based network approach for protein classification.
    PLoS One. 2017;12:e0174386.
    PubMed     Abstract available

  1401. SONG YN, Dong S, Wei B, Liu P, et al
    Metabolomic mechanisms of gypenoside against liver fibrosis in rats: An integrative analysis of proteomics and metabolomics data.
    PLoS One. 2017;12:e0173598.
    PubMed     Abstract available

  1402. FUKAGAWA T, Takafuji K, Tachibanaki S, Kawamura S, et al
    Purification of cone outer segment for proteomic analysis on its membrane proteins in carp retina.
    PLoS One. 2017;12:e0173908.
    PubMed     Abstract available

  1403. CELIS JS, Edgell DR, Stelbrink B, Wibberg D, et al
    Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
    PLoS One. 2017;12:e0173734.
    PubMed     Abstract available

  1404. LIU T, Luo C, Wang J, Ma J, et al
    Assessment of the genomic prediction accuracy for feed efficiency traits in meat-type chickens.
    PLoS One. 2017;12:e0173620.
    PubMed     Abstract available

  1405. GUERRERO-JIMENEZ CJ, Pena F, Morales P, Mendez M, et al
    Pattern of genetic differentiation of an incipient speciation process: The case of the high Andean killifish Orestias.
    PLoS One. 2017;12:e0170380.
    PubMed     Abstract available

  1406. CHRISTENSEN KA, Davidson WS
    Autopolyploidy genome duplication preserves other ancient genome duplications in Atlantic salmon (Salmo salar).
    PLoS One. 2017;12:e0173053.
    PubMed     Abstract available

  1407. MATSUDA F, Kinoshita S, Nishino S, Tomita A, et al
    Targeted proteome analysis of single-gene deletion strains of Saccharomyces cerevisiae lacking enzymes in the central carbon metabolism.
    PLoS One. 2017;12:e0172742.
    PubMed     Abstract available

  1408. LI J, Yang B, Shi M, Yuan K, et al
    Effects upon metabolic pathways and energy production by Sb(III) and As(III)/Sb(III)-oxidase gene aioA in Agrobacterium tumefaciens GW4.
    PLoS One. 2017;12:e0172823.
    PubMed     Abstract available

  1409. HAFT DR, Haft DH
    A comprehensive software suite for protein family construction and functional site prediction.
    PLoS One. 2017;12:e0171758.
    PubMed     Abstract available

  1410. MICALLEF G, Cash P, Fernandes JM, Rajan B, et al
    Dietary Yeast Cell Wall Extract Alters the Proteome of the Skin Mucous Barrier in Atlantic Salmon (Salmo salar): Increased Abundance and Expression of a Calreticulin-Like Protein.
    PLoS One. 2017;12:e0169075.
    PubMed     Abstract available

  1411. ELMI AA, Bansal D, Acharya A, Skariah S, et al
    Human Papillomavirus (HPV) Infection: Molecular Epidemiology, Genotyping, Seroprevalence and Associated Risk Factors among Arab Women in Qatar.
    PLoS One. 2017;12:e0169197.
    PubMed     Abstract available

  1412. JAMANN TM, Sood S, Wisser RJ, Holland JB, et al
    High-Throughput Resequencing of Maize Landraces at Genomic Regions Associated with Flowering Time.
    PLoS One. 2017;12:e0168910.
    PubMed     Abstract available

  1413. BOUCHEHAM A, Sommard V, Zehraoui F, Boualem A, et al
    IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data.
    PLoS One. 2017;12:e0179787.
    PubMed     Abstract available

  1414. PINSONNEAULT JK, Frater JT, Kompa B, Mascarenhas R, et al
    Intronic SNP in ESR1 encoding human estrogen receptor alpha is associated with brain ESR1 mRNA isoform expression and behavioral traits.
    PLoS One. 2017;12:e0179020.
    PubMed     Abstract available

  1415. MOHR T, Haudek-Prinz V, Slany A, Grillari J, et al
    Proteome profiling in IL-1beta and VEGF-activated human umbilical vein endothelial cells delineates the interlink between inflammation and angiogenesis.
    PLoS One. 2017;12:e0179065.
    PubMed     Abstract available

  1416. PARK KH, Greenwood-Quaintance KE, Uhl JR, Cunningham SA, et al
    Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing.
    PLoS One. 2017;12:e0179003.
    PubMed     Abstract available

  1417. SINGH V, Singh B, Joshi R, Jaju P, et al
    Changes in the leaf proteome profile of Withania somnifera (L.) Dunal in response to Alternaria alternata infection.
    PLoS One. 2017;12:e0178924.
    PubMed     Abstract available

  1418. ZHOU DX, Zhao Y, Baker JA, Gu Q, et al
    The effect of alcohol on the differential expression of cluster of differentiation 14 gene, associated pathways, and genetic network.
    PLoS One. 2017;12:e0178689.
    PubMed     Abstract available

  1419. CSOSZ E, Labiscsak P, Kallo G, Markus B, et al
    Proteomics investigation of OSCC-specific salivary biomarkers in a Hungarian population highlights the importance of identification of population-tailored biomarkers.
    PLoS One. 2017;12:e0177282.
    PubMed     Abstract available

  1420. UGARTE TORRES A, Chu A, Read R, MacDonald J, et al
    The epidemiology of Staphylococcus aureus carriage in patients attending inner city sexually transmitted infections and community clinics in Calgary, Canada.
    PLoS One. 2017;12:e0178557.
    PubMed     Abstract available

  1421. GUPTA S, Bhar A, Chatterjee M, Ghosh A, et al
    Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp. ciceri Race 1 attack.
    PLoS One. 2017;12:e0178164.
    PubMed     Abstract available

  1422. TEIXEIRA ADD, Games PD, Katz BB, Tomich JM, et al
    Proteomic analysis in the Dufour's gland of Africanized Apis mellifera workers (Hymenoptera: Apidae).
    PLoS One. 2017;12:e0177415.
    PubMed     Abstract available

  1423. CAMERON SJS, Lewis KE, Huws SA, Hegarty MJ, et al
    A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer.
    PLoS One. 2017;12:e0177062.
    PubMed     Abstract available

  1424. WANG X, Shojaie A, Zhang Y, Shelley D, et al
    Exploratory plasma proteomic analysis in a randomized crossover trial of aspirin among healthy men and women.
    PLoS One. 2017;12:e0178444.
    PubMed     Abstract available

  1425. YAMAZAKI T, Hatano Y, Handa T, Kato S, et al
    Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.
    PLoS One. 2017;12:e0177764.
    PubMed     Abstract available

  1426. EVERS C, Fischer C, Dikow N, Schott S, et al
    Familial breast cancer: Genetic counseling over time, including patients expectations and initiators considering the Angelina Jolie effect.
    PLoS One. 2017;12:e0177893.
    PubMed     Abstract available

  1427. XIAO W, Chen P, Xiao J, Wang, et al
    Comparative transcriptome profiling of a thermal resistant vs. sensitive silkworm strain in response to high temperature under stressful humidity condition.
    PLoS One. 2017;12:e0177641.
    PubMed     Abstract available

  1428. HAKIMI O, Ternette N, Murphy R, Kessler BM, et al
    A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue.
    PLoS One. 2017;12:e0177656.
    PubMed     Abstract available

  1429. WILLEMS H, Jacobs A, Hadiwikarta WW, Venken T, et al
    Thermodynamic framework to assess low abundance DNA mutation detection by hybridization.
    PLoS One. 2017;12:e0177384.
    PubMed     Abstract available

  1430. BOHME M, Spassov N, Ebner M, Geraads D, et al
    Messinian age and savannah environment of the possible hominin Graecopithecus from Europe.
    PLoS One. 2017;12:e0177347.
    PubMed     Abstract available

  1431. CHEN YC, Chen KD, Su MC, Chin CH, et al
    Genome-wide gene expression array identifies novel genes related to disease severity and excessive daytime sleepiness in patients with obstructive sleep apnea.
    PLoS One. 2017;12:e0176575.
    PubMed     Abstract available

  1432. PAVA Z, Noviyanti R, Handayuni I, Trimarsanto H, et al
    Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections.
    PLoS One. 2017;12:e0177445.
    PubMed     Abstract available

  1433. RAVIV B, Granot G, Chalifa-Caspi V, Grafi G, et al
    The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor.
    PLoS One. 2017;12:e0177537.
    PubMed     Abstract available

  1434. ZHENG Y, Xu S, Liu J, Zhao Y, et al
    Genetic diversity and population structure of Chinese natural bermudagrass [Cynodon dactylon (L.) Pers.] germplasm based on SRAP markers.
    PLoS One. 2017;12:e0177508.
    PubMed     Abstract available

  1435. DIEZ BENAVENTE E, Ward Z, Chan W, Mohareb FR, et al
    Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure.
    PLoS One. 2017;12:e0177134.
    PubMed     Abstract available

  1436. KHOMTCHOUK BB, Hennessy JR, Wahlestedt C
    shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics.
    PLoS One. 2017;12:e0176334.
    PubMed     Abstract available

  1437. PASCUAL M, Rives B, Schunter C, Macpherson E, et al
    Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea.
    PLoS One. 2017;12:e0176419.
    PubMed     Abstract available

  1438. MONTANA L, Caniglia R, Galaverni M, Fabbri E, et al
    Combining phylogenetic and demographic inferences to assess the origin of the genetic diversity in an isolated wolf population.
    PLoS One. 2017;12:e0176560.
    PubMed     Abstract available

  1439. YU H, Zhang Y, Wang Z, Liu L, et al
    Diverse range dynamics and dispersal routes of plants on the Tibetan Plateau during the late Quaternary.
    PLoS One. 2017;12:e0177101.
    PubMed     Abstract available

  1440. ZHOU Y, Wang S, Zhu H, Li P, et al
    Phylogeny and biogeography of South Chinese brown frogs (Ranidae, Anura).
    PLoS One. 2017;12:e0175113.
    PubMed     Abstract available

  1441. IBANEZ MI, Cabello P, Luque-Almagro VM, Saez LP, et al
    Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS).
    PLoS One. 2017;12:e0172908.
    PubMed     Abstract available

  1442. TRIVEDI MS, Holger D, Bui AT, Craddock TJA, et al
    Short-term sleep deprivation leads to decreased systemic redox metabolites and altered epigenetic status.
    PLoS One. 2017;12:e0181978.
    PubMed     Abstract available

  1443. MURPHY SM, Augustine BC, Ulrey WA, Guthrie JM, et al
    Consequences of severe habitat fragmentation on density, genetics, and spatial capture-recapture analysis of a small bear population.
    PLoS One. 2017;12:e0181849.
    PubMed     Abstract available

  1444. TSAI FJ, Chen SY, Liu YC, Liao HY, et al
    The comparison of CHCA solvent compositions for improving LC-MALDI performance and its application to study the impact of aflatoxin B1 on the liver proteome of diabetes mellitus type 1 mice.
    PLoS One. 2017;12:e0181423.
    PubMed     Abstract available

  1445. EREZ O, Romero R, Maymon E, Chaemsaithong P, et al
    The prediction of late-onset preeclampsia: Results from a longitudinal proteomics study.
    PLoS One. 2017;12:e0181468.
    PubMed     Abstract available

  1446. VOLDOIRE E, Brunet F, Naville M, Volff JN, et al
    Expansion by whole genome duplication and evolution of the sox gene family in teleost fish.
    PLoS One. 2017;12:e0180936.
    PubMed     Abstract available

  1447. OLIVEIRA LR, Gehara MCM, Fraga LD, Lopes F, et al
    Ancient female philopatry, asymmetric male gene flow, and synchronous population expansion support the influence of climatic oscillations on the evolution of South American sea lion (Otaria flavescens).
    PLoS One. 2017;12:e0179442.
    PubMed     Abstract available

  1448. SINGH A, Sharma AK, Singh NK, Sharma TR, et al
    PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes.
    PLoS One. 2017;12:e0179736.
    PubMed     Abstract available

  1449. HAN Z, Huang H, Gao Y, Huang Q, et al
    Functional annotation of Alzheimer's disease associated loci revealed by GWASs.
    PLoS One. 2017;12:e0179677.
    PubMed     Abstract available

  1450. DUNCAN C, Jamieson FB, Troudt J, Izzo L, et al
    Whole transcriptomic and proteomic analyses of an isogenic M. tuberculosis clinical strain with a naturally occurring 15 Kb genomic deletion.
    PLoS One. 2017;12:e0179996.
    PubMed     Abstract available

  1451. XU K, Niu Q, Zhao H, Du Y, et al
    Transcriptomic analysis to uncover genes affecting cold resistance in the Chinese honey bee (Apis cerana cerana).
    PLoS One. 2017;12:e0179922.
    PubMed     Abstract available

  1452. MACKIEWICZ P, Moska M, Wierzbicki H, Gagat P, et al
    Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group.
    PLoS One. 2017;12:e0179760.
    PubMed     Abstract available

  1453. WU YH, Cheng H, Xu L, Jin XB, et al
    Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater.
    PLoS One. 2017;12:e0179997.
    PubMed     Abstract available

  1454. SUSEK K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, et al
    Epigenomic diversification within the genus Lupinus.
    PLoS One. 2017;12:e0179821.
    PubMed     Abstract available

  1455. LISTL D, Poschlod P, Reisch C
    Phylogeography of a tough rock survivor in European dry grasslands.
    PLoS One. 2017;12:e0179961.
    PubMed     Abstract available

  1456. RIZAL G, Karki S, Thakur V, Wanchana S, et al
    A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio.
    PLoS One. 2017;12:e0179567.
    PubMed     Abstract available

  1457. BWOGI J, Jere KC, Karamagi C, Byarugaba DK, et al
    Whole genome analysis of selected human and animal rotaviruses identified in Uganda from 2012 to 2014 reveals complex genome reassortment events between human, bovine, caprine and porcine strains.
    PLoS One. 2017;12:e0178855.
    PubMed     Abstract available

  1458. KRUSE A, Fattah-Hosseini S, Saha S, Johnson R, et al
    Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.
    PLoS One. 2017;12:e0179531.
    PubMed     Abstract available

  1459. RIVERA M, Ramos Y, Rodriguez-Valentin M, Lopez-Acevedo S, et al
    Targeting multiple pro-apoptotic signaling pathways with curcumin in prostate cancer cells.
    PLoS One. 2017;12:e0179587.
    PubMed     Abstract available

  1460. ADACHI S
    Rigid geometry solves "curse of dimensionality" effects in clustering methods: An application to omics data.
    PLoS One. 2017;12:e0179180.
    PubMed     Abstract available

  1461. PEARSON LJ, Klaharn IY, Thongsawang B, Manuprasert W, et al
    Multiple extracellular vesicle types in peritoneal dialysis effluent are prominent and contain known biomarkers.
    PLoS One. 2017;12:e0178601.
    PubMed     Abstract available

  1462. LUO S, Cao N, Tang Y, Gu W, et al
    Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis.
    PLoS One. 2017;12:e0178549.
    PubMed     Abstract available

  1463. GAMEZ-POZO A, Trilla-Fuertes L, Prado-Vazquez G, Chiva C, et al
    Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics.
    PLoS One. 2017;12:e0178296.
    PubMed     Abstract available

  1464. PANNACCIULLI FG, Maltagliati F, de Guttry C, Achituv Y, et al
    Phylogeography on the rocks: The contribution of current and historical factors in shaping the genetic structure of Chthamalus montagui (Crustacea, Cirripedia).
    PLoS One. 2017;12:e0178287.
    PubMed     Abstract available

  1465. SAHLBERG BANG C, Demirel I, Kruse R, Persson K, et al
    Global gene expression profiling and antibiotic susceptibility after repeated exposure to the carbon monoxide-releasing molecule-2 (CORM-2) in multidrug-resistant ESBL-producing uropathogenic Escherichia coli.
    PLoS One. 2017;12:e0178541.
    PubMed     Abstract available

  1466. NYINE M, Uwimana B, Swennen R, Batte M, et al
    Trait variation and genetic diversity in a banana genomic selection training population.
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    PubMed     Abstract available

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