Home The Word Brain	My Amedeo FAQ Privacy About
	Hanzi Hunter Learning 500 Chinese characters in 30 days is possible. Abstract • About

Genetics

Free Subscription Articles published in Genome Res Retrieve available abstracts of 129 articles: HTML format

Single Articles

March 2026
1. XIE D, Ye P, Ma Y, Zhao Z, et al
   Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility.
   Genome Res. 2026;36:506-521.
   PubMed     Abstract available
   
   
   
2. ARRES J, Elavalli S, Behl S, Matias Sanchez D, et al
   Assessing the readiness of Oxford Nanopore sequencing for clinical genomics applications.
   Genome Res. 2026;36:460-471.
   PubMed     Abstract available
   
   
   
3. SHEMIRANI R, Belbin GM, Cullina S, Caggiano C, et al
   A spectral component approach leveraging identity-by-descent graphs to address recent population structure in genomic analysis.
   Genome Res. 2026;36:534-546.
   PubMed     Abstract available
   
   
   February 2026
4. HUANG Z, Zheng R, Jia P, Yan X, et al
   scSHEFT enables multiomics label transfer from scRNA-seq to scATAC-seq through dual alignment.
   Genome Res. 2026;36:387-396.
   PubMed     Abstract available
   
   
   
5. GELETA M, Montserrat DM, Giro-I-Nieto X, Ioannidis AG, et al
   Autoencoders for genomic variation analysis.
   Genome Res. 2026;36:348-360.
   PubMed     Abstract available
   
   
   
6. PEEDE D, Banuelos MM, Medina Tretmanis J, Miyagi M, et al
   Recent advances in methods to characterize archaic introgression in modern humans.
   Genome Res. 2026;36:239-256.
   PubMed     Abstract available
   
   
   
7. ZHANG W, Liu Y, Li G, Xu J, et al
   Strain-level metagenomic profiling using pangenome graphs with PanTax.
   Genome Res. 2026;36:405-420.
   PubMed     Abstract available
   
   
   
8. YE C, Li X, Cheng N, Su Y, et al
   The SynMall resource for characterizing the functional impact of synonymous variation.
   Genome Res. 2026;36:421-431.
   PubMed     Abstract available
   
   
   
9. SHIVAKUMAR VS, Langmead B
   Partitioned multi-MUM finding for scalable pangenomics with MumemtoM.
   Genome Res. 2026;36:397-404.
   PubMed     Abstract available
   
   
   January 2026
10. KOSCH R, Limm K, Staiger AM, Kurz NS, et al
    Integration of high-throughput proteomic data and complementary omics layers with PriOmics.
    Genome Res. 2026;36:197-213.
    PubMed     Abstract available
    
    
    
11. THOMAS WR, Baldoni C, Zeng Y, Carlson D, et al
    Dynamic metabolic and molecular changes during seasonal shrinking in Sorex araneus.
    Genome Res. 2026;36:61-70.
    PubMed     Abstract available
    
    
    
12. ZHANG W, Cao L, Gu X, Long Y, et al
    Recovering gene regulatory networks in single-cell multi-omics data with PRISM-GRN.
    Genome Res. 2026;36:142-158.
    PubMed     Abstract available
    
    
    December 2025
13. ZHENG H, Sarkar H, Raphael BJ
    Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms.
    Genome Res. 2025;35:2734-2743.
    PubMed     Abstract available
    
    
    
14. DOKMAI N, Zhu K, Sahinalp SC, Cho H, et al
    Secure phasing of private genomes in a trusted execution environment with TX-Phase.
    Genome Res. 2025;35:2626-2636.
    PubMed     Abstract available
    
    
    
15. AHMED O, Boucher C, Langmead B
    Robust 16S rRNA classification based on a compressed LCA index.
    Genome Res. 2025;35:2650-2660.
    PubMed     Abstract available
    
    
    
16. CHANDRA G, Hossen MH, Scholz S, Dilthey AT, et al
    Pangenome-based genome inference using integer programming.
    Genome Res. 2025;35:2661-2670.
    PubMed     Abstract available
    
    
    
17. RAEISI DEHKORDI S, Jia Z, Estabrook J, Hauenstein J, et al
    OMKar automates genome karyotyping using optical maps to identify constitutional abnormalities.
    Genome Res. 2025;35:2671-2681.
    PubMed     Abstract available
    
    
    November 2025
18. PEEL N, Martin S, Heavens D, Yu DW, et al
    Real-time analysis and visualization of nanopore metagenomic samples with MARTi.
    Genome Res. 2025;35:2488-2500.
    PubMed     Abstract available
    
    
    
19. RIBEIRO-DOS-SANTOS AM, Maurano MT
    Iterative improvement of deep learning models using synthetic regulatory genomics.
    Genome Res. 2025;35:2539-2549.
    PubMed     Abstract available
    
    
    
20. MATTEI G, Baragli M, Gega B, Mingrino A, et al
    PoreMeth2 for decoding the evolution of methylome alterations with nanopore sequencing.
    Genome Res. 2025;35:2501-2512.
    PubMed     Abstract available
    
    
    
21. ZHOU J, Huang Y, Ma H, Chen Y, et al
    Adaptation of centromeres to breakage through local genomic and epigenomic remodeling in wheat.
    Genome Res. 2025;35:2461-2471.
    PubMed     Abstract available
    
    
    
22. MARTELOSSI J, Vujovic J, Huang Y, Tatti A, et al
    High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae.
    Genome Res. 2025;35:2601-2616.
    PubMed     Abstract available
    
    
    October 2025
23. SHU H, Chen J, Xu C, Hu J, et al
    Efficient integration of spatial omics data for joint domain detection, matching, and alignment with stMSA.
    Genome Res. 2025;35:2285-2299.
    PubMed     Abstract available
    
    
    September 2025
24. LITTLE JH, Meyer GH, Grover A, Francette AM, et al
    ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies.
    Genome Res. 2025;35:2041-2051.
    PubMed     Abstract available
    
    
    
25. BIAGINI SA, Becelaere S, Aerden M, Jatsenko T, et al
    Genotype imputation from low-coverage data for medical and population genetic analyses.
    Genome Res. 2025;35:1929-1941.
    PubMed     Abstract available
    
    
    
26. WU HL, Kaufman ID, Hsu PY
    The ggRibo single-gene viewer reveals insights into translatome and other nucleotide-resolution omics data.
    Genome Res. 2025;35:2130-2142.
    PubMed     Abstract available
    
    
    August 2025
27. ICHIKAWA K, Shoura MJ, Artiles KL, Jeong DE, et al
    CGC1, a new reference genome for Caenorhabditis elegans.
    Genome Res. 2025;35:1902-1918.
    PubMed     Abstract available
    
    
    
28. KALLEBERG J, Rissman J, Schnabel RD
    Overcoming limitations to customize DeepVariant for domesticated animals with TrioTrain.
    Genome Res. 2025;35:1859-1874.
    PubMed     Abstract available
    
    
    July 2025
29. VARKI R, Rossi M, Ferro E, Oliva M, et al
    Accurate short-read alignment through r-index-based pangenome indexing.
    Genome Res. 2025;35:1609-1620.
    PubMed     Abstract available
    
    
    
30. ZEKRI Y, Gregoricchio S, Yapici E, Huang CF, et al
    Comprehensive functional annotation of ESR1-driven enhancers in breast cancer reveals hierarchical activity independent of genomic and epigenomic contexts.
    Genome Res. 2025;35:1530-1543.
    PubMed     Abstract available
    
    
    
31. YAO J, Yu J, Caffo B, Page SC, et al
    Spatial domain detection using contrastive self-supervised learning for spatial multi-omics technologies.
    Genome Res. 2025;35:1621-1632.
    PubMed     Abstract available
    
    
    
32. MASTORAS M, Asri M, Brambrink L, Hebbar P, et al
    Highly accurate assembly polishing with DeepPolisher.
    Genome Res. 2025;35:1595-1608.
    PubMed     Abstract available
    
    
    
33. ANTIPOV D, Rautiainen M, Nurk S, Walenz BP, et al
    Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding.
    Genome Res. 2025;35:1583-1594.
    PubMed     Abstract available
    
    
    
34. JAYASOORIYA K, Jenner SP, Marasinghe P, Senanayake U, et al
    A new compression strategy to reduce the size of nanopore sequencing data.
    Genome Res. 2025;35:1574-1582.
    PubMed     Abstract available
    
    
    
35. MENDOZA-FERRI MG, Lozachmeur G, Duvina M, Perret L, et al
    Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase.
    Genome Res. 2025;35:1633-1645.
    PubMed     Abstract available
    
    
    June 2025
36. TAM R, Moller M, Luo R, Luo Z, et al
    Long-read genomics reveal extensive nuclear-specific evolution and allele-specific expression in a dikaryotic fungus.
    Genome Res. 2025;35:1364-1376.
    PubMed     Abstract available
    
    
    
37. HAMMOND N, Liao L, Tong PW, Ng Z, et al
    Analytical validation of germline small variant detection using long-read HiFi genome sequencing.
    Genome Res. 2025;35:1391-1399.
    PubMed     Abstract available
    
    
    May 2025
38. FREEDMAN AH, Sackton TB
    Building better genome annotations across the tree of life.
    Genome Res. 2025;35:1261-1276.
    PubMed     Abstract available
    
    
    
39. SMITH BJ, Zhao C, Dubinkina V, Jin X, et al
    Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC.
    Genome Res. 2025;35:1247-1260.
    PubMed     Abstract available
    
    
    
40. LEE DI, Roy S
    Examining the dynamics of three-dimensional genome organization with multitask matrix factorization.
    Genome Res. 2025;35:1179-1193.
    PubMed     Abstract available
    
    
    April 2025
41. MONTANO C, Timp W
    Evolution of genome-wide methylation profiling technologies.
    Genome Res. 2025;35:572-582.
    PubMed     Abstract available
    
    
    
42. RAUSCH T, Marschall T, Korbel JO
    The impact of long-read sequencing on human population-scale genomics.
    Genome Res. 2025;35:593-598.
    PubMed     Abstract available
    
    
    
43. MAHMOUD M, Agustinho DP, Sedlazeck FJ
    A Hitchhiker's Guide to long-read genomic analysis.
    Genome Res. 2025;35:545-558.
    PubMed     Abstract available
    
    
    
44. JENSEN TD, Ni B, Reuter CM, Gorzynski JE, et al
    Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease.
    Genome Res. 2025;35:914-928.
    PubMed     Abstract available
    
    
    
45. LI Q, Keskus AG, Wagner J, Izydorczyk MB, et al
    Unraveling the hidden complexity of cancer through long-read sequencing.
    Genome Res. 2025;35:599-620.
    PubMed     Abstract available
    
    
    
46. MONZO C, Frankish A, Conesa A
    Notable challenges posed by long-read sequencing for the study of transcriptional diversity and genome annotation.
    Genome Res. 2025;35:583-592.
    PubMed     Abstract available
    
    
    
47. VRCEK L, Bresson X, Laurent T, Schmitz M, et al
    Geometric deep learning framework for de novo genome assembly.
    Genome Res. 2025;35:839-849.
    PubMed     Abstract available
    
    
    March 2025
48. MA J, Bechsgaard J, Aagaard A, Villesen P, et al
    The genomic consequences and persistence of sociality in spiders.
    Genome Res. 2025;35:499-511.
    PubMed     Abstract available
    
    
    
49. LI Y, Zhang J
    Transcriptomic and proteomic effects of gene deletion are not evolutionarily conserved.
    Genome Res. 2025;35:512-521.
    PubMed     Abstract available
    
    
    February 2025
50. JENIKE KM, Campos-Dominguez L, Bodde M, Cerca J, et al
    k-mer approaches for biodiversity genomics.
    Genome Res. 2025;35:219-230.
    PubMed     Abstract available
    
    
    
51. MIAO Z, Yue JX
    Interactive visualization and interpretation of pangenome graphs by linear reference-based coordinate projection and annotation integration.
    Genome Res. 2025;35:296-310.
    PubMed     Abstract available
    
    
    
52. ZHI D, Jiang X, Harmanci A
    Proxy panels enable privacy-aware outsourcing of genotype imputation.
    Genome Res. 2025;35:326-339.
    PubMed     Abstract available
    
    
    
53. LIU Y, Botelho J, Iranzo J
    Timescale and genetic linkage explain the variable impact of defense systems on horizontal gene transfer.
    Genome Res. 2025;35:268-278.
    PubMed     Abstract available
    
    
    
54. MOURATIDIS I, Konnaris MA, Chantzi N, Chan CSY, et al
    Identification of the shortest species-specific oligonucleotide sequences.
    Genome Res. 2025;35:279-295.
    PubMed     Abstract available
    
    
    
55. YAN M, Andersen TO, Pope PB, Yu Z, et al
    Probing the eukaryotic microbes of ruminants with a deep-learning classifier and comprehensive protein databases.
    Genome Res. 2025;35:368-378.
    PubMed     Abstract available
    
    
    January 2025
56. LEWIN TD, Liao IJ, Chen ME, Bishop JDD, et al
    Fusion, fission, and scrambling of the bilaterian genome in Bryozoa.
    Genome Res. 2025;35:78-92.
    PubMed     Abstract available
    
    
    
57. WOMERSLEY HJ, Muliaditan D, DasGupta R, Cheow LF, et al
    Single-nucleus CUT&RUN elucidates the function of intrinsic and genomics-driven epigenetic heterogeneity in head and neck cancer progression.
    Genome Res. 2025;35:162-177.
    PubMed     Abstract available
    
    
    December 2024
58. OROZCO-ARIAS S, Sierra P, Durbin R, Gonzalez J, et al
    MCHelper automatically curates transposable element libraries across eukaryotic species.
    Genome Res. 2024;34:2256-2268.
    PubMed     Abstract available
    
    
    
59. BURGER KE, Klepper S, von Luxburg U, Baumdicker F, et al
    Inferring ancestry with the hierarchical soft clustering approach tangleGen.
    Genome Res. 2024;34:2244-2255.
    PubMed     Abstract available
    
    
    November 2024
60. IYER SV, Goodwin S, McCombie WR
    Leveraging the power of long reads for targeted sequencing.
    Genome Res. 2024;34:1701-1718.
    PubMed     Abstract available
    
    
    
61. BYERLY PA, von Thaden A, Leushkin E, Hilgers L, et al
    Haplotype-resolved genome and population genomics of the threatened garden dormouse in Europe.
    Genome Res. 2024;34:2094-2107.
    PubMed     Abstract available
    
    
    
62. LI K, Smith ML, Blazier JC, Kochan KJ, et al
    Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding.
    Genome Res. 2024;34:2081-2093.
    PubMed     Abstract available
    
    
    
63. SLIZOVSKIY IB, Bonin N, Bravo JE, Ferm PM, et al
    Factors impacting target-enriched long-read sequencing of resistomes and mobilomes.
    Genome Res. 2024;34:2048-2060.
    PubMed     Abstract available
    
    
    
64. GOMEZ-SIMMONDS A, Annavajhala MK, Seeram D, Hokunson TW, et al
    Genomic epidemiology of carbapenem-resistant Enterobacterales at a New York City hospital over a 10-year period reveals complex plasmid-clone dynamics and evidence for frequent horizontal transfer of bla (KPC).
    Genome Res. 2024;34:1895-1907.
    PubMed     Abstract available
    
    
    
65. GUSTAFSON JA, Gibson SB, Damaraju N, Zalusky MPG, et al
    High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation.
    Genome Res. 2024;34:2061-2073.
    PubMed     Abstract available
    
    
    
66. JHA A, Bohaczuk SC, Mao Y, Ranchalis J, et al
    DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools.
    Genome Res. 2024;34:1976-1986.
    PubMed     Abstract available
    
    
    October 2024
67. DERELLE R, von Wachsmann J, Maklin T, Hellewell J, et al
    Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis.
    Genome Res. 2024;34:1661-1673.
    PubMed     Abstract available
    
    
    
68. VALENTIN-ALVARADO LE, Shi LD, Appler KE, Crits-Christoph A, et al
    Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements.
    Genome Res. 2024;34:1595-1609.
    PubMed     Abstract available
    
    
    
69. SCHROD S, Luck N, Lohmayer R, Solbrig S, et al
    Spatial Cellular Networks from omics data with SpaCeNet.
    Genome Res. 2024;34:1371-1383.
    PubMed     Abstract available
    
    
    
70. SAPCI AOB, Mirarab S
    Memory-bound k-mer selection for large and evolutionarily diverse reference libraries.
    Genome Res. 2024;34:1455-1467.
    PubMed     Abstract available
    
    
    
71. HONG MM, Froelicher D, Magner R, Popic V, et al
    Secure discovery of genetic relatives across large-scale and distributed genomic data sets.
    Genome Res. 2024;34:1312-1323.
    PubMed     Abstract available
    
    
    
72. AZIZPOUR A, Balaji A, Treangen TJ, Segarra S, et al
    Graph-based self-supervised learning for repeat detection in metagenomic assembly.
    Genome Res. 2024;34:1468-1476.
    PubMed     Abstract available
    
    
    
73. CHANDRA G, Gibney D, Jain C
    Haplotype-aware sequence alignment to pangenome graphs.
    Genome Res. 2024;34:1265-1275.
    PubMed     Abstract available
    
    
    September 2024
74. TIBBS-CORTES LE, Guo T, Andorf CM, Li X, et al
    Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize.
    Genome Res. 2024;34:1253-1263.
    PubMed     Abstract available
    
    
    
75. CHEN S, Wang J, Jung I, Qiu Z, et al
    A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data.
    Genome Res. 2024;34:1174-1184.
    PubMed     Abstract available
    
    
    August 2024
76. KURONEN J, Horsfield ST, Pontinen AK, Mallawaarachchi S, et al
    Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs.
    Genome Res. 2024;34:1081-1088.
    PubMed     Abstract available
    
    
    
77. XIANG G, He X, Giardine BM, Isaac KJ, et al
    Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.
    Genome Res. 2024;34:1089-1105.
    PubMed     Abstract available
    
    
    July 2024
78. LEE S, Portlock T, Le Chatelier E, Garcia-Guevara F, et al
    Global compositional and functional states of the human gut microbiome in health and disease.
    Genome Res. 2024;34:967-978.
    PubMed     Abstract available
    
    
    
79. HIRTH A, Fatti E, Netz E, Acebron SP, et al
    DEAD box RNA helicases are pervasive protein kinase interactors and activators.
    Genome Res. 2024;34:952-966.
    PubMed     Abstract available
    
    
    
80. MORRISSEY A, Shi J, James DQ, Mahony S, et al
    Accurate allocation of multimapped reads enables regulatory element analysis at repeats.
    Genome Res. 2024;34:937-951.
    PubMed     Abstract available
    
    
    
81. BELLINZONA G, Nardi T, Castelli M, Batisti Biffignandi G, et al
    Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States.
    Genome Res. 2024;34:877-887.
    PubMed     Abstract available
    
    
    
82. BUCKLEY RM, Ostrander EA
    Large-scale genomic analysis of the domestic dog informs biological discovery.
    Genome Res. 2024;34:811-821.
    PubMed     Abstract available
    
    
    
83. ULRICH JU, Renard BY
    Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters.
    Genome Res. 2024;34:914-924.
    PubMed     Abstract available
    
    
    June 2024
84. GABRIEL L, Bruna T, Hoff KJ, Ebel M, et al
    BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA.
    Genome Res. 2024;34:769-777.
    PubMed     Abstract available
    
    
    
85. BRUNA T, Lomsadze A, Borodovsky M
    GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes.
    Genome Res. 2024;34:757-768.
    PubMed     Abstract available
    
    
    
86. WON S, Yu J, Kim H
    Identifying genes within pathways in unannotated genomes with PaGeSearch.
    Genome Res. 2024;34:784-795.
    PubMed     Abstract available
    
    
    
87. MURPHY WJ, Harris AJ
    Toward telomere-to-telomere cat genomes for precision medicine and conservation biology.
    Genome Res. 2024;34:655-664.
    PubMed     Abstract available
    
    
    
88. KOENIG Z, Yohannes MT, Nkambule LL, Zhao X, et al
    A harmonized public resource of deeply sequenced diverse human genomes.
    Genome Res. 2024;34:796-809.
    PubMed     Abstract available
    
    
    
89. GAMAARACHCHI H, Ferguson JM, Samarakoon H, Liyanage K, et al
    Simulation of nanopore sequencing signal data with tunable parameters.
    Genome Res. 2024;34:778-783.
    PubMed     Abstract available
    
    
    May 2024
90. CAI Q, Fu Y, Lyu C, Wang Z, et al
    A new framework for exploratory network mediator analysis in omics data.
    Genome Res. 2024;34:642-654.
    PubMed     Abstract available
    
    
    
91. JI S, Zhu T, Sethia A, Wang W, et al
    Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples.
    Genome Res. 2024;34:633-641.
    PubMed     Abstract available
    
    
    April 2024
92. LORIG-ROACH R, Meredith M, Monlong J, Jain M, et al
    Phased nanopore assembly with Shasta and modular graph phasing with GFAse.
    Genome Res. 2024;34:454-468.
    PubMed     Abstract available
    
    
    
93. FOROOZANDEH SHAHRAKI M, Farahbod M, Libbrecht MW
    Robust chromatin state annotation.
    Genome Res. 2024;34:469-483.
    PubMed     Abstract available
    
    
    March 2024
94. YU W, Luo H, Yang J, Zhang S, et al
    Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes.
    Genome Res. 2024;34:326-340.
    PubMed     Abstract available
    
    
    
95. CHE H, Jiang P, Choy LYL, Cheng SH, et al
    Genomic origin, fragmentomics, and transcriptional properties of long cell-free DNA molecules in human plasma.
    Genome Res. 2024;34:189-200.
    PubMed     Abstract available
    
    
    February 2024
96. LEBARON VON BAEYER S, Crocker R, Rakotoarivony R, Ranaivoarisoa JF, et al
    Why community consultation matters in genomic research benefit-sharing models.
    Genome Res. 2024;34:1-6.
    PubMed    
    
    
    December 2023
97. HARVEY WT, Ebert P, Ebler J, Audano PA, et al
    Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall.
    Genome Res. 2023;33:2029-2040.
    PubMed     Abstract available
    
    
    
98. EMANI PS, Geradi MN, Gursoy G, Grasty MR, et al
    Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases.
    Genome Res. 2023;33:2156-2173.
    PubMed     Abstract available
    
    
    
99. METZGER DCH, Porter I, Mobley B, Sandkam BA, et al
    Transposon wave remodeled the epigenomic landscape in the rapid evolution of X-Chromosome dosage compensation.
    Genome Res. 2023;33:1917-1931.
    PubMed     Abstract available
    
    
    October 2023
100. CHRISMAN B, He C, Jung JY, Stockham N, et al
     Localizing unmapped sequences with families to validate the Telomere-to-Telomere assembly and identify new hotspots for genetic diversity.
     Genome Res. 2023;33:1734-1746.
     PubMed     Abstract available
     
     
     
101. BARIL T, Pym A, Bass C, Hayward A, et al
     Transposon accumulation at xenobiotic gene family loci in aphids.
     Genome Res. 2023;33:1718-1733.
     PubMed     Abstract available
     
     
     
102. SPROUL JS, Hotaling S, Heckenhauer J, Powell A, et al
     Analyses of 600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges.
     Genome Res. 2023;33:1708-1717.
     PubMed     Abstract available
     
     
     September 2023
103. LI Z, Meisner J, Albrechtsen A
     Fast and accurate out-of-core PCA framework for large scale biobank data.
     Genome Res. 2023;33:1599-1608.
     PubMed     Abstract available
     
     
     
104. PAREY E, Fernandez-Aroca D, Frost S, Uribarren A, et al
     Phylogenetic modeling of enhancer shifts in African mole-rats reveals regulatory changes associated with tissue-specific traits.
     Genome Res. 2023;33:1513-1526.
     PubMed     Abstract available
     
     
     August 2023
105. DE TRIBOLET-HARDY J, Thorball CW, Forey R, Planet E, et al
     Genetic features and genomic targets of human KRAB-zinc finger proteins.
     Genome Res. 2023;33:1409-1423.
     PubMed     Abstract available
     
     
     
106. DAI X, Bian P, Hu D, Luo F, et al
     A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other Bos species.
     Genome Res. 2023;33:1284-1298.
     PubMed     Abstract available
     
     
     
107. MARMOL-SANCHEZ E, Fromm B, Oskolkov N, Pochon Z, et al
     Historical RNA expression profiles from the extinct Tasmanian tiger.
     Genome Res. 2023;33:1299-1316.
     PubMed     Abstract available
     
     
     July 2023
108. SCHWEIGER R, Durbin R
     Ultrafast genome-wide inference of pairwise coalescence times.
     Genome Res. 2023;33:1023-1031.
     PubMed     Abstract available
     
     
     
109. BAKER DN, Langmead B
     Genomic sketching with multiplicities and locality-sensitive hashing using Dashing 2.
     Genome Res. 2023;33:1218-1227.
     PubMed     Abstract available
     
     
     
110. RAHMAN HERA M, Pierce-Ward NT, Koslicki D
     Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash.
     Genome Res. 2023;33:1061-1068.
     PubMed     Abstract available
     
     
     
111. CRACCO A, Tomescu AI
     Extremely fast construction and querying of compacted and colored de Bruijn graphs with GGCAT.
     Genome Res. 2023;33:1198-1207.
     PubMed     Abstract available
     
     
     
112. VENKATESARAMANI R, Wan Z, Malin BA, Vorobeychik Y, et al
     Enabling tradeoffs in privacy and utility in genomic data Beacons and summary statistics.
     Genome Res. 2023;33:1113-1123.
     PubMed     Abstract available
     
     
     June 2023
113. GRANDCHAMP A, Kuhl L, Lebherz M, Bruggemann K, et al
     Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster.
     Genome Res. 2023;33:872-890.
     PubMed     Abstract available
     
     
     
114. JOURDAIN J, Barasc H, Faraut T, Calgaro A, et al
     Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets.
     Genome Res. 2023;33:957-971.
     PubMed     Abstract available
     
     
     
115. ATKINSON EG, Artomov M, Loboda AA, Rehm HL, et al
     Discordant calls across genotype discovery approaches elucidate variants with systematic errors.
     Genome Res. 2023;33:999-1005.
     PubMed     Abstract available
     
     
     May 2023
116. PALAHI I TORRES A, Hook L, Nasvall K, Shipilina D, et al
     The fine-scale recombination rate variation and associations with genomic features in a butterfly.
     Genome Res. 2023;33:810-823.
     PubMed     Abstract available
     
     
     
117. MORIN A, Chu EC, Sharma A, Adrian-Hamazaki A, et al
     Characterizing the targets of transcription regulators by aggregating ChIP-seq and perturbation expression data sets.
     Genome Res. 2023;33:763-778.
     PubMed     Abstract available
     
     
     
118. JIAO Y, Li M, He X, Wang Y, et al
     Targeted, programmable, and precise tandem duplication in the mammalian genome.
     Genome Res. 2023;33:779-786.
     PubMed     Abstract available
     
     
     
119. MUMM C, Drexel ML, McDonald TL, Diehl AG, et al
     Multiplexed long-read plasmid validation and analysis using OnRamp.
     Genome Res. 2023;33:741-749.
     PubMed     Abstract available
     
     
     
120. ZHUO X, Hsu S, Purushotham D, Kuntala PK, et al
     Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser.
     Genome Res. 2023;33:824-835.
     PubMed     Abstract available
     
     
     
121. BAFNA A, Banks G, Hastings MH, Nolan PM, et al
     Dynamic modulation of genomic enhancer elements in the suprachiasmatic nucleus, the site of the mammalian circadian clock.
     Genome Res. 2023;33:673-688.
     PubMed     Abstract available
     
     
     
122. GERSHMAN A, Hauck Q, Dick M, Jamison JM, et al
     Genomic insights into metabolic flux in hummingbirds.
     Genome Res. 2023;33:703-714.
     PubMed     Abstract available
     
     
     April 2023
123. BARROSO GV, Lohmueller KE
     Inferring the mode and strength of ongoing selection.
     Genome Res. 2023;33:632-643.
     PubMed     Abstract available
     
     
     
124. SUN Y, Cheng Z, Li X, Yang Q, et al
     Genome enrichment of rare and unknown species from complicated microbiomes by nanopore selective sequencing.
     Genome Res. 2023;33:612-621.
     PubMed     Abstract available
     
     
     March 2023
125. ZHU FY, Chen X, Song YC, Lam LPY, et al
     SWATH-MS-based proteogenomic analysis reveals the involvement of alternative splicing in poplar upon lead stress.
     Genome Res. 2023;33:371-385.
     PubMed     Abstract available
     
     
     
126. LIU J, Dawe RK
     Large haplotypes highlight a complex age structure within the maize pan-genome.
     Genome Res. 2023;33:359-370.
     PubMed     Abstract available
     
     
     
127. DEBO BM, Mallory BJ, Stergachis AB
     Evaluation of N (6)-methyldeoxyadenosine antibody-based genomic profiling in eukaryotes.
     Genome Res. 2023;33:427-434.
     PubMed     Abstract available
     
     
     February 2023
128. TIAN T, Zhong C, Lin X, Wei Z, et al
     Complex hierarchical structures in single-cell genomics data unveiled by deep hyperbolic manifold learning.
     Genome Res. 2023;33:232-246.
     PubMed     Abstract available
     
     
     
129. O'CONNELL BL, Nichols RV, Pokholok D, Thomas J, et al
     Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing.
     Genome Res. 2023;33:208-217.
     PubMed     Abstract available
     
     

Thank you for your interest in scientific medicine.

AMEDEO Genetics is free of charge. Privacy / Datenschutzerklärung | Imprint / Impressum