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	COVID-19: Daily Top 10 Papers

Influenza

Free Subscription Articles published in PLoS Comput Biol Retrieve available abstracts of 138 articles: HTML format

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September 2021
1. RUDIGER D, Pelz L, Hein MD, Kupke SY, et al
   Multiscale model of defective interfering particle replication for influenza A virus infection in animal cell culture.
   PLoS Comput Biol. 2021;17:e1009357.
   PubMed     Abstract available
   
   
   
2. BAUER S, Contreras S, Dehning J, Linden M, et al
   Relaxing restrictions at the pace of vaccination increases freedom and guards against further COVID-19 waves.
   PLoS Comput Biol. 2021;17:e1009288.
   PubMed     Abstract available
   
   
   August 2021
3. PINKY L, Burke CW, Russell CJ, Smith AM, et al
   Quantifying dose-, strain-, and tissue-specific kinetics of parainfluenza virus infection.
   PLoS Comput Biol. 2021;17:e1009299.
   PubMed     Abstract available
   
   
   
4. DUTTA R, Gomes SN, Kalise D, Pacchiardi L, et al
   Using mobility data in the design of optimal lockdown strategies for the COVID-19 pandemic.
   PLoS Comput Biol. 2021;17:e1009236.
   PubMed     Abstract available
   
   
   
5. MAURAS S, Cohen-Addad V, Duboc G, Dupre la Tour M, et al
   Mitigating COVID-19 outbreaks in workplaces and schools by hybrid telecommuting.
   PLoS Comput Biol. 2021;17:e1009264.
   PubMed     Abstract available
   
   
   
6. TERUEL N, Mailhot O, Najmanovich RJ
   Modelling conformational state dynamics and its role on infection for SARS-CoV-2 Spike protein variants.
   PLoS Comput Biol. 2021;17:e1009286.
   PubMed     Abstract available
   
   
   
7. YANG S, Senapati P, Wang D, Bauch CT, et al
   Targeted pandemic containment through identifying local contact network bottlenecks.
   PLoS Comput Biol. 2021;17:e1009351.
   PubMed     Abstract available
   
   
   July 2021
8. TURTLE J, Riley P, Ben-Nun M, Riley S, et al
   Accurate influenza forecasts using type-specific incidence data for small geographic units.
   PLoS Comput Biol. 2021;17:e1009230.
   PubMed     Abstract available
   
   
   
9. MILIOU I, Xiong X, Rinzivillo S, Zhang Q, et al
   Predicting seasonal influenza using supermarket retail records.
   PLoS Comput Biol. 2021;17:e1009087.
   PubMed     Abstract available
   
   
   
10. JANG H, Polgreen PM, Segre AM, Pemmaraju SV, et al
    COVID-19 modeling and non-pharmaceutical interventions in an outpatient dialysis unit.
    PLoS Comput Biol. 2021;17:e1009177.
    PubMed     Abstract available
    
    
    
11. TUPPER P, Colijn C
    COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission.
    PLoS Comput Biol. 2021;17:e1009120.
    PubMed     Abstract available
    
    
    
12. CHERIAN P, Krishna S, Menon GI
    Optimizing testing for COVID-19 in India.
    PLoS Comput Biol. 2021;17:e1009126.
    PubMed     Abstract available
    
    
    
13. NAUMOV V, Putin E, Pushkov S, Kozlova E, et al
    COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity.
    PLoS Comput Biol. 2021;17:e1009183.
    PubMed     Abstract available
    
    
    
14. GIBBS H, Nightingale E, Liu Y, Cheshire J, et al
    Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19.
    PLoS Comput Biol. 2021;17:e1009162.
    PubMed     Abstract available
    
    
    
15. LI T, White LF
    Bayesian back-calculation and nowcasting for line list data during the COVID-19 pandemic.
    PLoS Comput Biol. 2021;17:e1009210.
    PubMed     Abstract available
    
    
    
16. CAZELLES B, Champagne C, Nguyen-Van-Yen B, Comiskey C, et al
    A mechanistic and data-driven reconstruction of the time-varying reproduction number: Application to the COVID-19 epidemic.
    PLoS Comput Biol. 2021;17:e1009211.
    PubMed     Abstract available
    
    
    
17. KERR CC, Stuart RM, Mistry D, Abeysuriya RG, et al
    Covasim: An agent-based model of COVID-19 dynamics and interventions.
    PLoS Comput Biol. 2021;17:e1009149.
    PubMed     Abstract available
    
    
    
18. PARISI A, Brand SPC, Hilton J, Aziza R, et al
    Spatially resolved simulations of the spread of COVID-19 in three European countries.
    PLoS Comput Biol. 2021;17:e1009090.
    PubMed     Abstract available
    
    
    
19. HINCH R, Probert WJM, Nurtay A, Kendall M, et al
    OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing.
    PLoS Comput Biol. 2021;17:e1009146.
    PubMed     Abstract available
    
    
    
20. PREM K, Zandvoort KV, Klepac P, Eggo RM, et al
    Projecting contact matrices in 177 geographical regions: An update and comparison with empirical data for the COVID-19 era.
    PLoS Comput Biol. 2021;17:e1009098.
    PubMed     Abstract available
    
    
    June 2021
21. LU FS, Nguyen AT, Link NB, Molina M, et al
    Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches.
    PLoS Comput Biol. 2021;17:e1008994.
    PubMed     Abstract available
    
    
    
22. YUAN H, Kramer SC, Lau EHY, Cowling BJ, et al
    Modeling influenza seasonality in the tropics and subtropics.
    PLoS Comput Biol. 2021;17:e1009050.
    PubMed     Abstract available
    
    
    
23. HILL EM, Atkins BD, Keeling MJ, Dyson L, et al
    A network modelling approach to assess non-pharmaceutical disease controls in a worker population: An application to SARS-CoV-2.
    PLoS Comput Biol. 2021;17:e1009058.
    PubMed     Abstract available
    
    
    
24. DILLON MR, Bolyen E, Adamov A, Belk A, et al
    Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
    PLoS Comput Biol. 2021;17:e1009056.
    PubMed     Abstract available
    
    
    
25. GARDNER BJ, Kilpatrick AM
    Contact tracing efficiency, transmission heterogeneity, and accelerating COVID-19 epidemics.
    PLoS Comput Biol. 2021;17:e1009122.
    PubMed     Abstract available
    
    
    
26. CAVALLARO M, Moiz H, Keeling MJ, McCarthy ND, et al
    Contrasting factors associated with COVID-19-related ICU admission and death outcomes in hospitalised patients by means of Shapley values.
    PLoS Comput Biol. 2021;17:e1009121.
    PubMed     Abstract available
    
    
    May 2021
27. MOORE S, Hill EM, Dyson L, Tildesley MJ, et al
    Modelling optimal vaccination strategy for SARS-CoV-2 in the UK.
    PLoS Comput Biol. 2021;17:e1008849.
    PubMed     Abstract available
    
    
    
28. SERRANO-SOLANO B, Foll MC, Gallardo-Alba C, Erxleben A, et al
    Fostering accessible online education using Galaxy as an e-learning platform.
    PLoS Comput Biol. 2021;17:e1008923.
    PubMed     Abstract available
    
    
    
29. GALLARDO-ALBA C, Gruning B, Serrano-Solano B
    A constructivist-based proposal for bioinformatics teaching practices during lockdown.
    PLoS Comput Biol. 2021;17:e1008922.
    PubMed     Abstract available
    
    
    
30. LIM JT, Maung K, Tan ST, Ong SE, et al
    Estimating direct and spill-over impacts of political elections on COVID-19 transmission using synthetic control methods.
    PLoS Comput Biol. 2021;17:e1008959.
    PubMed     Abstract available
    
    
    April 2021
31. SIKORA M, von Bulow S, Blanc FEC, Gecht M, et al
    Computational epitope map of SARS-CoV-2 spike protein.
    PLoS Comput Biol. 2021;17:e1008790.
    PubMed     Abstract available
    
    
    
32. NANDA P, Ghosh A
    Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection.
    PLoS Comput Biol. 2021;17:e1008860.
    PubMed     Abstract available
    
    
    March 2021
33. ZIPFEL CM, Colizza V, Bansal S
    Health inequities in influenza transmission and surveillance.
    PLoS Comput Biol. 2021;17:e1008642.
    PubMed     Abstract available
    
    
    
34. BRAULT V, Mallein B, Rupprecht JF
    Group testing as a strategy for COVID-19 epidemiological monitoring and community surveillance.
    PLoS Comput Biol. 2021;17:e1008726.
    PubMed     Abstract available
    
    
    
35. LIBIN PJK, Willem L, Verstraeten T, Torneri A, et al
    Assessing the feasibility and effectiveness of household-pooled universal testing to control COVID-19 epidemics.
    PLoS Comput Biol. 2021;17:e1008688.
    PubMed     Abstract available
    
    
    
36. CZUPPON P, Debarre F, Goncalves A, Tenaillon O, et al
    Success of prophylactic antiviral therapy for SARS-CoV-2: Predicted critical efficacies and impact of different drug-specific mechanisms of action.
    PLoS Comput Biol. 2021;17:e1008752.
    PubMed     Abstract available
    
    
    
37. DING J, Hostallero DE, El Khili MR, Fonseca GJ, et al
    A network-informed analysis of SARS-CoV-2 and hemophagocytic lymphohistiocytosis genes' interactions points to Neutrophil extracellular traps as mediators of thrombosis in COVID-19.
    PLoS Comput Biol. 2021;17:e1008810.
    PubMed     Abstract available
    
    
    
38. RICHARD Q, Alizon S, Choisy M, Sofonea MT, et al
    Age-structured non-pharmaceutical interventions for optimal control of COVID-19 epidemic.
    PLoS Comput Biol. 2021;17:e1008776.
    PubMed     Abstract available
    
    
    
39. STURNIOLO S, Waites W, Colbourn T, Manheim D, et al
    Testing, tracing and isolation in compartmental models.
    PLoS Comput Biol. 2021;17:e1008633.
    PubMed     Abstract available
    
    
    
40. DI LAURO F, Kiss IZ, Miller JC
    Optimal timing of one-shot interventions for epidemic control.
    PLoS Comput Biol. 2021;17:e1008763.
    PubMed     Abstract available
    
    
    
41. GONCALVES A, Maisonnasse P, Donati F, Albert M, et al
    SARS-CoV-2 viral dynamics in non-human primates.
    PLoS Comput Biol. 2021;17:e1008785.
    PubMed     Abstract available
    
    
    
42. HOLCOMB D, Alexaki A, Hernandez N, Hunt R, et al
    Gene variants of coagulation related proteins that interact with SARS-CoV-2.
    PLoS Comput Biol. 2021;17:e1008805.
    PubMed     Abstract available
    
    
    
43. WATSON GL, Xiong D, Zhang L, Zoller JA, et al
    Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model.
    PLoS Comput Biol. 2021;17:e1008837.
    PubMed     Abstract available
    
    
    
44. TORNERI A, Libin P, Scalia Tomba G, Faes C, et al
    On realized serial and generation intervals given control measures: The COVID-19 pandemic case.
    PLoS Comput Biol. 2021;17:e1008892.
    PubMed     Abstract available
    
    
    February 2021
45. FISCON G, Conte F, Farina L, Paci P, et al
    SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19.
    PLoS Comput Biol. 2021;17:e1008686.
    PubMed     Abstract available
    
    
    
46. BRACHER J, Ray EL, Gneiting T, Reich NG, et al
    Evaluating epidemic forecasts in an interval format.
    PLoS Comput Biol. 2021;17:e1008618.
    PubMed     Abstract available
    
    
    
47. DATTNER I, Goldberg Y, Katriel G, Yaari R, et al
    The role of children in the spread of COVID-19: Using household data from Bnei Brak, Israel, to estimate the relative susceptibility and infectivity of children.
    PLoS Comput Biol. 2021;17:e1008559.
    PubMed     Abstract available
    
    
    
48. NANDE A, Adlam B, Sheen J, Levy MZ, et al
    Dynamics of COVID-19 under social distancing measures are driven by transmission network structure.
    PLoS Comput Biol. 2021;17:e1008684.
    PubMed     Abstract available
    
    
    
49. TREVEIL A, Bohar B, Sudhakar P, Gul L, et al
    ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways.
    PLoS Comput Biol. 2021;17:e1008685.
    PubMed     Abstract available
    
    
    
50. BOUMAN JA, Riou J, Bonhoeffer S, Regoes RR, et al
    Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches.
    PLoS Comput Biol. 2021;17:e1008728.
    PubMed     Abstract available
    
    
    
51. ARTHUR RF, Jones JH, Bonds MH, Ram Y, et al
    Adaptive social contact rates induce complex dynamics during epidemics.
    PLoS Comput Biol. 2021;17:e1008639.
    PubMed     Abstract available
    
    
    January 2021
52. LEE BY, Bartsch SM, Ferguson MC, Wedlock PT, et al
    The value of decreasing the duration of the infectious period of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.
    PLoS Comput Biol. 2021;17:e1008470.
    PubMed     Abstract available
    
    
    
53. KEELING MJ, Hill EM, Gorsich EE, Penman B, et al
    Predictions of COVID-19 dynamics in the UK: Short-term forecasting and analysis of potential exit strategies.
    PLoS Comput Biol. 2021;17:e1008619.
    PubMed     Abstract available
    
    
    
54. TEPEKULE B, Hauser A, Kachalov VN, Andresen S, et al
    Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19.
    PLoS Comput Biol. 2021;17:e1008609.
    PubMed     Abstract available
    
    
    
55. KOYAMA S, Horie T, Shinomoto S
    Estimating the time-varying reproduction number of COVID-19 with a state-space method.
    PLoS Comput Biol. 2021;17:e1008679.
    PubMed     Abstract available
    
    
    
56. BIN M, Cheung PYK, Crisostomi E, Ferraro P, et al
    Post-lockdown abatement of COVID-19 by fast periodic switching.
    PLoS Comput Biol. 2021;17:e1008604.
    PubMed     Abstract available
    
    
    
57. OMAR SI, Zhao M, Sekar RV, Moghadam SA, et al
    Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers.
    PLoS Comput Biol. 2021;17:e1008603.
    PubMed     Abstract available
    
    
    
58. SHARKER Y, Kenah E
    Estimating and interpreting secondary attack risk: Binomial considered biased.
    PLoS Comput Biol. 2021;17:e1008601.
    PubMed     Abstract available
    
    
    
59. GIBSON GC, Moran KR, Reich NG, Osthus D, et al
    Improving probabilistic infectious disease forecasting through coherence.
    PLoS Comput Biol. 2021;17:e1007623.
    PubMed     Abstract available
    
    
    December 2020
60. GOSTIC KM, McGough L, Baskerville EB, Abbott S, et al
    Practical considerations for measuring the effective reproductive number, Rt.
    PLoS Comput Biol. 2020;16:e1008409.
    PubMed     Abstract available
    
    
    
61. CATALA M, Alonso S, Alvarez-Lacalle E, Lopez D, et al
    Empirical model for short-time prediction of COVID-19 spreading.
    PLoS Comput Biol. 2020;16:e1008431.
    PubMed     Abstract available
    
    
    
62. RODRIGUES JPGLM, Barrera-Vilarmau S, M C Teixeira J, Sorokina M, et al
    Insights on cross-species transmission of SARS-CoV-2 from structural modeling.
    PLoS Comput Biol. 2020;16:e1008449.
    PubMed     Abstract available
    
    
    
63. ANDERSON SC, Edwards AM, Yerlanov M, Mulberry N, et al
    Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing.
    PLoS Comput Biol. 2020;16:e1008274.
    PubMed     Abstract available
    
    
    
64. ZHANG H, Yang Y, Li J, Wang M, et al
    A novel virtual screening procedure identifies Pralatrexate as inhibitor of SARS-CoV-2 RdRp and it reduces viral replication in vitro.
    PLoS Comput Biol. 2020;16:e1008489.
    PubMed     Abstract available
    
    
    
65. RICH S, Diaconescu AO, Griffiths JD, Lankarany M, et al
    Ten simple rules for creating a brand-new virtual academic meeting (even amid a pandemic).
    PLoS Comput Biol. 2020;16:e1008485.
    PubMed     Abstract available
    
    
    
66. PADMANABHAN P, Desikan R, Dixit NM
    Targeting TMPRSS2 and Cathepsin B/L together may be synergistic against SARS-CoV-2 infection.
    PLoS Comput Biol. 2020;16:e1008461.
    PubMed     Abstract available
    
    
    
67. DELGADO BLANCO J, Hernandez-Alias X, Cianferoni D, Serrano L, et al
    In silico mutagenesis of human ACE2 with S protein and translational efficiency explain SARS-CoV-2 infectivity in different species.
    PLoS Comput Biol. 2020;16:e1008450.
    PubMed     Abstract available
    
    
    
68. SEGO TJ, Aponte-Serrano JO, Ferrari Gianlupi J, Heaps SR, et al
    A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness.
    PLoS Comput Biol. 2020;16:e1008451.
    PubMed     Abstract available
    
    
    
69. LIU QH, Bento AI, Yang K, Zhang H, et al
    The COVID-19 outbreak in Sichuan, China: Epidemiology and impact of interventions.
    PLoS Comput Biol. 2020;16:e1008467.
    PubMed     Abstract available
    
    
    November 2020
70. LEUBA SI, Yaesoubi R, Antillon M, Cohen T, et al
    Tracking and predicting U.S. influenza activity with a real-time surveillance network.
    PLoS Comput Biol. 2020;16:e1008180.
    PubMed     Abstract available
    
    
    
71. QUIROUETTE C, Younis NP, Reddy MB, Beauchemin CAA, et al
    Correction: A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract.
    PLoS Comput Biol. 2020;16:e1008424.
    PubMed     Abstract available
    
    
    
72. RILLIG MC, Bielcik M, Chaudhary VB, Grunfeld L, et al
    Ten simple rules for increased lab resilience.
    PLoS Comput Biol. 2020;16:e1008313.
    PubMed     Abstract available
    
    
    October 2020
73. PEI S, Shaman J
    Aggregating forecasts of multiple respiratory pathogens supports more accurate forecasting of influenza-like illness.
    PLoS Comput Biol. 2020;16:e1008301.
    PubMed     Abstract available
    
    
    
74. KRAMER SC, Pei S, Shaman J
    Forecasting influenza in Europe using a metapopulation model incorporating cross-border commuting and air travel.
    PLoS Comput Biol. 2020;16:e1008233.
    PubMed     Abstract available
    
    
    
75. HILL EM, Petrou S, Forster H, de Lusignan S, et al
    Optimising age coverage of seasonal influenza vaccination in England: A mathematical and health economic evaluation.
    PLoS Comput Biol. 2020;16:e1008278.
    PubMed     Abstract available
    
    
    
76. NORDMANN E, Horlin C, Hutchison J, Murray JA, et al
    Ten simple rules for supporting a temporary online pivot in higher education.
    PLoS Comput Biol. 2020;16:e1008242.
    PubMed     Abstract available
    
    
    
77. SADRIA M, Layton AT
    Use of Angiotensin-Converting Enzyme Inhibitors and Angiotensin II Receptor Blockers During the COVID-19 Pandemic: A Modeling Analysis.
    PLoS Comput Biol. 2020;16:e1008235.
    PubMed     Abstract available
    
    
    
78. HOLLINGSWORTH B, Okamoto KW, Lloyd AL
    After the honeymoon, the divorce: Unexpected outcomes of disease control measures against endemic infections.
    PLoS Comput Biol. 2020;16:e1008292.
    PubMed     Abstract available
    
    
    
79. MCCOMBS A, Kadelka C
    A model-based evaluation of the efficacy of COVID-19 social distancing, testing and hospital triage policies.
    PLoS Comput Biol. 2020;16:e1008388.
    PubMed     Abstract available
    
    
    
80. KREEGER PK, Brock A, Gibbs HC, Grande-Allen KJ, et al
    Ten simple rules for women principal investigators during a pandemic.
    PLoS Comput Biol. 2020;16:e1008370.
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81. KARCHER MD, Carvalho LM, Suchard MA, Dudas G, et al
    Estimating effective population size changes from preferentially sampled genetic sequences.
    PLoS Comput Biol. 2020;16:e1007774.
    PubMed     Abstract available
    
    
    September 2020
82. ZHAO Z, Sokhansanj BA, Malhotra C, Zheng K, et al
    Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization.
    PLoS Comput Biol. 2020;16:e1008269.
    PubMed     Abstract available
    
    
    
83. POLITANO G, Benso A
    IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis.
    PLoS Comput Biol. 2020;16:e1008238.
    PubMed     Abstract available
    
    
    July 2020
84. SCARPINO SV, Scott JG, Eggo RM, Clements B, et al
    Socioeconomic bias in influenza surveillance.
    PLoS Comput Biol. 2020;16:e1007941.
    PubMed     Abstract available
    
    
    
85. HILTON J, Keeling MJ
    Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices.
    PLoS Comput Biol. 2020;16:e1008031.
    PubMed     Abstract available
    
    
    
86. PARAG KV, Donnelly CA
    Using information theory to optimise epidemic models for real-time prediction and estimation.
    PLoS Comput Biol. 2020;16:e1007990.
    PubMed     Abstract available
    
    
    
87. BUCUR D, Holme P
    Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities.
    PLoS Comput Biol. 2020;16:e1008052.
    PubMed     Abstract available
    
    
    June 2020
88. YANG W, Lau EHY, Cowling BJ
    Dynamic interactions of influenza viruses in Hong Kong during 1998-2018.
    PLoS Comput Biol. 2020;16:e1007989.
    PubMed     Abstract available
    
    
    
89. SAAD-ROY CM, Arinaminpathy N, Wingreen NS, Levin SA, et al
    Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans.
    PLoS Comput Biol. 2020;16:e1007892.
    PubMed     Abstract available
    
    
    
90. DUVIGNEAU S, Durr R, Laske T, Bachmann M, et al
    Model-based approach for predicting the impact of genetic modifications on product yield in biopharmaceutical manufacturing-Application to influenza vaccine production.
    PLoS Comput Biol. 2020;16:e1007810.
    PubMed     Abstract available
    
    
    May 2020
91. WANG TE, Chao TL, Tsai HT, Lin PH, et al
    Differentiation of Cytopathic Effects (CPE) induced by influenza virus infection using deep Convolutional Neural Networks (CNN).
    PLoS Comput Biol. 2020;16:e1007883.
    PubMed     Abstract available
    
    
    
92. GOZZI N, Perrotta D, Paolotti D, Perra N, et al
    Towards a data-driven characterization of behavioral changes induced by the seasonal flu.
    PLoS Comput Biol. 2020;16:e1007879.
    PubMed     Abstract available
    
    
    April 2020
93. QUIROUETTE C, Younis NP, Reddy MB, Beauchemin CAA, et al
    A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract.
    PLoS Comput Biol. 2020;16:e1007705.
    PubMed     Abstract available
    
    
    
94. MCGOUGH SF, Johansson MA, Lipsitch M, Menzies NA, et al
    Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking.
    PLoS Comput Biol. 2020;16:e1007735.
    PubMed     Abstract available
    
    
    February 2020
95. CASTRO LA, Bedford T, Ancel Meyers L
    Early prediction of antigenic transitions for influenza A/H3N2.
    PLoS Comput Biol. 2020;16:e1007683.
    PubMed     Abstract available
    
    
    
96. REIMERING S, Munoz S, McHardy AC
    Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic.
    PLoS Comput Biol. 2020;16:e1007101.
    PubMed     Abstract available
    
    
    December 2019
97. ENDO A, Uchida M, Kucharski AJ, Funk S, et al
    Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15.
    PLoS Comput Biol. 2019;15:e1007589.
    PubMed     Abstract available
    
    
    November 2019
98. REICH NG, McGowan CJ, Yamana TK, Tushar A, et al
    Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
    PLoS Comput Biol. 2019;15:e1007486.
    PubMed     Abstract available
    
    
    
99. RANGARAJAN P, Mody SK, Marathe M
    Forecasting dengue and influenza incidences using a sparse representation of Google trends, electronic health records, and time series data.
    PLoS Comput Biol. 2019;15:e1007518.
    PubMed     Abstract available
    
    
    October 2019
100. HILL EM, Petrou S, de Lusignan S, Yonova I, et al
     Seasonal influenza: Modelling approaches to capture immunity propagation.
     PLoS Comput Biol. 2019;15:e1007096.
     PubMed     Abstract available
     
     
     
101. PRIEDHORSKY R, Daughton AR, Barnard M, O'Connell F, et al
     Estimating influenza incidence using search query deceptiveness and generalized ridge regression.
     PLoS Comput Biol. 2019;15:e1007165.
     PubMed     Abstract available
     
     
     September 2019
102. VENKATRAMANAN S, Chen J, Fadikar A, Gupta S, et al
     Optimizing spatial allocation of seasonal influenza vaccine under temporal constraints.
     PLoS Comput Biol. 2019;15:e1007111.
     PubMed     Abstract available
     
     
     
103. BECKER AD, Wesolowski A, Bjornstad ON, Grenfell BT, et al
     Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccination.
     PLoS Comput Biol. 2019;15:e1007305.
     PubMed     Abstract available
     
     
     August 2019
104. HAY JA, Laurie K, White M, Riley S, et al
     Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets.
     PLoS Comput Biol. 2019;15:e1007294.
     PubMed     Abstract available
     
     
     
105. YANG J, Muller NF, Bouckaert R, Xu B, et al
     Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration.
     PLoS Comput Biol. 2019;15:e1007189.
     PubMed     Abstract available
     
     
     
106. KANDULA S, Shaman J
     Reappraising the utility of Google Flu Trends.
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