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Articles published in J Clin Microbiol

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    July 2021
  1. EROL E, Scortti M, Fortner J, Patel M, et al
    Antimicrobial resistance spectrum conferred by pRErm46 of emerging macrolide (multidrug)-resistant Rhodococcus equi.
    J Clin Microbiol. 2021 Jul 28:JCM0114921. doi: 10.1128/JCM.01149.
    PubMed     Abstract available

  2. MARRAS SAE, Chen L, Shashkina E, Davidson RM, et al
    A Molecular-Beacon-Based Multiplex Real-Time PCR Assay To Distinguish Mycobacterium abscessus Subspecies and Determine Macrolide Susceptibility.
    J Clin Microbiol. 2021;59:e0045521.
    PubMed     Abstract available

    June 2021
  3. FOUDRAINE DE, Strepis N, Klaassen CHW, Raaphorst MN, et al
    Rapid and Accurate Detection of Aminoglycoside-Modifying Enzymes and 16S rRNA Methyltransferases by Targeted Liquid Chromatography-Tandem Mass Spectrometry.
    J Clin Microbiol. 2021;59:e0046421.
    PubMed     Abstract available

  4. MEYER SAUTEUR PM, Panisova E, Seiler M, Theiler M, et al
    Mycoplasma pneumoniae Genotypes and Clinical Outcome in Children.
    J Clin Microbiol. 2021;59:e0074821.
    PubMed     Abstract available

    May 2021
  5. KHAN A, Rivas LM, Spencer M, Martinez R, et al
    Correction for Khan et al., "A Multicenter Study To Evaluate Ceftaroline Breakpoints: Performance in an Area with High Prevalence of Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Lineage".
    J Clin Microbiol. 2021;59.

  6. YEE R, Dien Bard J, Simner PJ
    The Genotype-to-Phenotype Dilemma: How Should Laboratories Approach Discordant Susceptibility Results?
    J Clin Microbiol. 2021;59.
    PubMed     Abstract available

    April 2021
  7. KAKIUCHI T, Miyata I, Kimura R, Shimomura G, et al
    Clinical evaluation of a novel point-of-care assay to detect Mycoplasma pneumoniae and associated macrolide resistant mutations.
    J Clin Microbiol. 2021 Apr 28. pii: JCM.03245-20. doi: 10.1128/JCM.03245.
    PubMed     Abstract available

    March 2021
  8. VALLABHANENI S, Huang JY, Grass JE, Bhatnagar A, et al
    Antimicrobial Susceptibility Profiles to Predict the Presence of Carbapenemase Genes among Carbapenem-Resistant Pseudomonas aeruginosa.
    J Clin Microbiol. 2021 Mar 24. pii: JCM.02874-20. doi: 10.1128/JCM.02874.
    PubMed     Abstract available

  9. LE ROY C, Bebear C, Pereyre S
    Performance of Three Commercial Molecular Diagnostic Assays for the Simultaneous Detection of Mycoplasma genitalium and Macrolide Resistance.
    J Clin Microbiol. 2021 Mar 17. pii: JCM.00020-21. doi: 10.1128/JCM.00020.
    PubMed     Abstract available

  10. MANNION A, Dzink-Fox J, Shen Z, Piazuelo MB, et al
    Helicobacter pylori antimicrobial resistance and gene variants in high and low gastric cancer risk populations.
    J Clin Microbiol. 2021 Mar 10. pii: JCM.03203-20. doi: 10.1128/JCM.03203.
    PubMed     Abstract available

  11. LEE DYJ, Ashcroft MM, Chow EPF, Sait M, et al
    Reflex detection of ciprofloxacin resistance in Neisseria gonorrhoeae using the SpeeDx ResistancePlus(R) GC assay.
    J Clin Microbiol. 2021 Mar 3. pii: JCM.00089-21. doi: 10.1128/JCM.00089.
    PubMed     Abstract available

    February 2021
  12. KLEIN M, Bacher J, Barth S, Atrzadeh F, et al
    Multicenter Evaluation of the Unyvero Platform for Testing Bronchoalveolar Lavage Fluid.
    J Clin Microbiol. 2021;59.
    PubMed     Abstract available

  13. ANAHTAR MN, Yang JH, Kanjilal S
    Applications of machine learning to the problem of antimicrobial resistance: An emerging model for translational research.
    J Clin Microbiol. 2021 Feb 3. pii: JCM.01260-20. doi: 10.1128/JCM.01260.
    PubMed     Abstract available

  14. MARRERO ROLON R, Cunningham SA, Mandrekar JN, Polo ET, et al
    Clinical Evaluation of a Real-Time PCR Assay for Simultaneous Detection of Helicobacter pylori and Genotypic Markers of Clarithromycin Resistance Directly from Stool.
    J Clin Microbiol. 2021 Feb 3. pii: JCM.03040-20. doi: 10.1128/JCM.03040.
    PubMed     Abstract available

    January 2021
  15. SUKHUM KV, Jean S, Wallace M, Anderson N, et al
    Genomic Characterization of Emerging Bacterial Uropathogen Neisseria meningitidis, Which Was Misidentified as Neisseria gonorrhoeae by Nucleic Acid Amplification Testing.
    J Clin Microbiol. 2021;59.
    PubMed     Abstract available

  16. CORTAZZO V, D'Inzeo T, Giordano L, Menchinelli G, et al
    Comparing BioFire FilmArray BCID2 and BCID panels for direct detection of bacterial pathogens and antimicrobial resistance genes from positive blood cultures.
    J Clin Microbiol. 2021 Jan 20. pii: JCM.03163-20. doi: 10.1128/JCM.03163.
    PubMed     Abstract available

  17. GABRIELAITE M, Bartell JA, Norskov-Lauritsen N, Pressler T, et al
    Transmission and antibiotic resistance of Achromobacter in cystic fibrosis.
    J Clin Microbiol. 2021 Jan 20. pii: JCM.02911-20. doi: 10.1128/JCM.02911.
    PubMed     Abstract available

    December 2020
  18. CAO Y, Parmar H, Gaur RL, Lieu D, et al
    Xpert MTB/XDR: A ten-color reflex assay suitable for point of care settings to detect isoniazid-, fluoroquinolone-, and second-line injectable drug-resistance directly from Mycobacterium tuberculosis positive sputum.
    J Clin Microbiol. 2020 Dec 9. pii: JCM.02314-20. doi: 10.1128/JCM.02314.
    PubMed     Abstract available

    November 2020
  19. LIU HC, Gao YL, Li DF, Zhao XY, et al
    Value of Xpert MTB/RIF Using Bronchoalveolar Lavage Fluid for the Diagnosis of Pulmonary Tuberculosis: A Systematic Review and Meta-Analysis.
    J Clin Microbiol. 2020 Nov 11. pii: JCM.02170-20. doi: 10.1128/JCM.02170.
    PubMed     Abstract available

    October 2020
  20. HUMPHRIES RM, Magnano P, Burnham CA, Dien Bard J, et al
    Evaluation of surrogate tests for the presence of mecA-mediated methicillin resistance in Staphylococcus haemolyticus, Staphylococcus hominis, Staphylococcus capitis and Staphylococcus warneri.
    J Clin Microbiol. 2020 Oct 28. pii: JCM.02290-20. doi: 10.1128/JCM.02290.
    PubMed     Abstract available

    September 2020
  21. SHEA J, Halse TA, Kohlerschmidt D, Lapierre P, et al
    Low-level rifampin resistance and rpoB mutations in Mycobacterium tuberculosis: An analysis of whole-genome sequencing and drug susceptibility test data in New York.
    J Clin Microbiol. 2020 Sep 30. pii: JCM.01885-20. doi: 10.1128/JCM.01885.
    PubMed     Abstract available

  22. SORIA ME, Garcia-Crespo C, Martinez-Gonzalez B, Vazquez-Sirvent L, et al
    Amino acid substitutions associated with treatment failure of hepatitis C virus infection.
    J Clin Microbiol. 2020 Sep 30. pii: JCM.01985-20. doi: 10.1128/JCM.01985.
    PubMed     Abstract available

  23. THUY DUONG V, Chung The H, Do Hoang Nhu T, Thanh Tuyen H, et al
    Genomic serotyping, clinical manifestations, and antimicrobial resistance of non-typhoidal Salmonella gastroenteritis in hospitalized children in Ho Chi Minh City, Vietnam.
    J Clin Microbiol. 2020 Sep 9. pii: JCM.01465-20. doi: 10.1128/JCM.01465.
    PubMed     Abstract available

  24. YU LS, Rodriguez-Manzano J, Moser N, Moniri A, et al
    Rapid detection of azole-resistant Aspergillus fumigatus in clinical and environmental isolates using lab-on-a-chip diagnostic system.
    J Clin Microbiol. 2020 Sep 9. pii: JCM.00843-20. doi: 10.1128/JCM.00843.
    PubMed     Abstract available

    August 2020
  25. CATANZARO DG, Colman RE, Linger Y, Georghiou SB, et al
    Laboratory evaluation of a lateral-flow cell for molecular detection of first-line and second-line anti-tuberculosis drug resistance.
    J Clin Microbiol. 2020 Aug 19. pii: JCM.01417-20. doi: 10.1128/JCM.01417.
    PubMed     Abstract available

    July 2020
  26. SWEENEY EL, Lowry K, Ebeyan S, Lundgren M, et al
    Evaluation of the SpeeDx MG parC (beta) PCR assay for the rapid detection of Mycoplasma genitalium quinolone resistance-associated mutations.
    J Clin Microbiol. 2020 Jul 22. pii: JCM.01432-20. doi: 10.1128/JCM.01432.
    PubMed     Abstract available

  27. JOSEPH LA, Francois Watkins LK, Chen J, Tagg KA, et al
    Comparison of Molecular Subtyping and Antimicrobial Resistance Detection Methods Used in a Large Multi-State Outbreak of Extensively Drug-Resistant Campylobacter jejuni Infections Linked to Pet Store Puppies.
    J Clin Microbiol. 2020 Jul 22. pii: JCM.00771-20. doi: 10.1128/JCM.00771.
    PubMed     Abstract available

  28. HILMARSDOTTIR I, Arnardottir EM, Johannesdottir ER, Valsdottir F, et al
    Prevalence of Mycoplasma genitalium and antibiotic resistance-associated mutations in an Icelandic STI population, and comparison of the S-DiaMGTV and Aptima Mycoplasma genitalium assays for diagnosis.
    J Clin Microbiol. 2020 Jul 1. pii: JCM.01084-20. doi: 10.1128/JCM.01084.
    PubMed     Abstract available

    June 2020
  29. BURNARD D, Gore L, Henderson A, Ranasinghe A, et al
    Comparative genomics and antimicrobial resistance profiling of Elizabethkingia isolates reveals nosocomial transmission and in vitro susceptibility to fluoroquinolones, tetracyclines and trimethoprim-sulfamethoxazole.
    J Clin Microbiol. 2020 Jun 24. pii: JCM.00730-20. doi: 10.1128/JCM.00730.
    PubMed     Abstract available

  30. SOUTHON SB, Beres SB, Kachroo P, Ojeda Saavedra M, et al
    Population genomic molecular epidemiological study of macrolide resistant Streptococcus pyogenes in Iceland, 1995-2016: Identification of a large clonal population with a pbp2x mutation conferring reduced in vitro beta-lactam susceptibility.
    J Clin Microbiol. 2020 Jun 10. pii: JCM.00638-20. doi: 10.1128/JCM.00638.
    PubMed     Abstract available

  31. SWEENEY EL, Tickner J, Bletchly C, Nimmo GR, et al
    Genotyping of Mycoplasma genitalium suggests de novo acquisition of antimicrobial resistance, Queensland, Australia.
    J Clin Microbiol. 2020 Jun 3. pii: JCM.00641-20. doi: 10.1128/JCM.00641.
    PubMed     Abstract available

    April 2020
  32. FERREIRA I, Beisken S, Lueftinger L, Weinmaier T, et al
    Species Identification and Antibiotic Resistance Prediction by Analysis of Whole Genome Sequence Data Using ARESdb - An Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial.
    J Clin Microbiol. 2020 Apr 15. pii: JCM.00273-20. doi: 10.1128/JCM.00273.
    PubMed     Abstract available

  33. LEAL SM JR, Totten AH, Xiao L, Crabb DM, et al
    Evaluation of Commercial Molecular Diagnostic Methods for the Detection and Determination of Macrolide Resistance in Mycoplasma pneumoniae.
    J Clin Microbiol. 2020 Apr 8. pii: JCM.00242-20. doi: 10.1128/JCM.00242.
    PubMed     Abstract available

    March 2020
  34. GHORASHI SA, Heller J, Zhang Q, Sahibzada S, et al
    Differentiation of community-associated and livestock-associated methicillin-resistant Staphylococcus aureus isolates and identification of spa types using PCR and high-resolution melt curve analysis.
    J Clin Microbiol. 2020 Mar 4. pii: JCM.02088-19. doi: 10.1128/JCM.02088.
    PubMed     Abstract available

    February 2020
  35. KERSH EN, Pham CD, Papp JR, Myers R, et al
    Expanding US Laboratory Capacity for Neisseria gonorrhoeae Antimicrobial Susceptibility Testing and Whole Genome Sequencing through CDC's Antibiotic Resistance Laboratory Network.
    J Clin Microbiol. 2020 Feb 5. pii: JCM.01461-19. doi: 10.1128/JCM.01461.
    PubMed     Abstract available

    January 2020
  36. GARGIS AS, Yoo BB, Lonsway DR, Anderson K, et al
    Difficult-to-Detect Staphylococcus aureus: mecA-positive Isolates Associated with Oxacillin and Cefoxitin False-Susceptible Results.
    J Clin Microbiol. 2020 Jan 29. pii: JCM.02038-19. doi: 10.1128/JCM.02038.
    PubMed     Abstract available

  37. PICHON M, Pichard B, Barrioz T, Plouzeau C, et al
    Diagnostic accuracy of a non-invasive test for the detection of Helicobacter pylori and resistance to clarithromycin in stool by Real-Time PCR Amplidiag((R)) H. pylori + ClariR assay.
    J Clin Microbiol. 2020 Jan 29. pii: JCM.01787-19. doi: 10.1128/JCM.01787.
    PubMed     Abstract available

  38. GREEN DA, Macesic N, Uhlemann AC, Lopez M, et al
    Evaluation of Calcium-Enhanced Media for Colistin Susceptibility Testing by Gradient Agar Diffusion and Broth Microdilution.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available

  39. BIAGI M, Tan X, Wu T, Jurkovic M, et al
    Activity of Potential Alternative Treatment Agents for Stenotrophomonas maltophilia Isolates Nonsusceptible to Levofloxacin and/or Trimethoprim-Sulfamethoxazole.
    J Clin Microbiol. 2020;58.
    PubMed     Abstract available

  40. SWEENEY EL, Mhango LP, Ebeyan S, Tan LY, et al
    Evaluation of the ResistancePlus(R) MG FleXible cartridge for near point-of-care testing of Mycoplasma genitalium and associated macrolide resistance mutations.
    J Clin Microbiol. 2020 Jan 2. pii: JCM.01897-19. doi: 10.1128/JCM.01897.
    PubMed     Abstract available

    December 2019
  41. SARANATHAN R, Levi MH, Wattam AR, Malek A, et al
    Helicobacter pylori infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-genome Sequencing.
    J Clin Microbiol. 2019 Dec 4. pii: JCM.01591-19. doi: 10.1128/JCM.01591.
    PubMed     Abstract available

  42. LE ROY C, Bebear C, Pereyre S
    Clinical evaluation of three commercial PCR assays for the detection of macrolide resistance in Mycoplasma genitalium.
    J Clin Microbiol. 2019 Dec 4. pii: JCM.01478-19. doi: 10.1128/JCM.01478.
    PubMed     Abstract available

    November 2019
  43. DUPIEUX C, Mouton W, Andre C, Vandenesch F, et al
    Performance of the revised version of an immunochromatographic assay for the detection of mecA- and mecC-mediated methicillin resistance in staphylococci.
    J Clin Microbiol. 2019 Nov 6. pii: JCM.01346-19. doi: 10.1128/JCM.01346.
    PubMed     Abstract available

    October 2019
    Genotyping of Mycobacterium tuberculosis Rifampin Resistance Associated Mutations Using Data From Xpert(R) MTB/RIF Ultra Enables Large-Scale Tuberculosis Molecular Epidemiology Studies.
    J Clin Microbiol. 2019 Oct 23. pii: JCM.01504-19. doi: 10.1128/JCM.01504.
    PubMed     Abstract available

  45. WORKNEH M, Wang R, Kazmi AQ, Chambers KK, et al
    Evaluation of the Direct MacConkey Method for Identification of Carbapenem-Resistant Gram-Negative Organisms from Rectal Swabs: Re-evaluating Zone Diameter Cutoffs.
    J Clin Microbiol. 2019 Oct 9. pii: JCM.01127-19. doi: 10.1128/JCM.01127.
    PubMed     Abstract available

  46. ALVAREZ A, Fernandez L, Gutierrez D, Iglesias B, et al
    Methicillin-resistant Staphylococcus aureus (MRSA) in hospitals: latest trends and treatments based on bacteriophages.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01006-19. doi: 10.1128/JCM.01006.
    PubMed     Abstract available

  47. SULLIVAN MJ, Altman DR, Chacko KI, Ciferri B, et al
    A complete genome screening program of clinical methicillin-resistant Staphylococcus aureus isolates identifies the origin and progression of a neonatal intensive care unit outbreak.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01261-19. doi: 10.1128/JCM.01261.
    PubMed     Abstract available

  48. MORRIS CP, Simner PJ
    Tailoring Antimicrobial Susceptibility Testing to Individual Species of Coagulase-Negative Staphylococci: Next up, Staphylococcus epidermidis.
    J Clin Microbiol. 2019 Oct 2. pii: JCM.01391-19. doi: 10.1128/JCM.01391.
    PubMed     Abstract available

    September 2019
  49. CAO Y, Parmar H, Simmons AM, Kale D, et al
    Automatic identification of individual rpoB gene mutations responsible for rifampin resistance in Mycobacterium tuberculosis using melting temperature signatures generated by the Xpert(R) MTB/RIF Ultra* assay.
    J Clin Microbiol. 2019 Sep 18. pii: JCM.00907-19. doi: 10.1128/JCM.00907.
    PubMed     Abstract available

  50. TENOVER FC, Tickler IA, Le VM, Dewell S, et al
    Updating Molecular Diagnostics for Detecting Methicillin-susceptible and Methicillin-resistant Staphylococcus aureus in Blood Culture Bottles.
    J Clin Microbiol. 2019 Sep 4. pii: JCM.01195-19. doi: 10.1128/JCM.01195.
    PubMed     Abstract available

  51. WAITES KB, Ratliff A, Crabb DM, Xiao L, et al
    Macrolide-Resistant Mycoplasma pneumoniae in the United States as Determined from a National Surveillance Program.
    J Clin Microbiol. 2019 Sep 4. pii: JCM.00968-19. doi: 10.1128/JCM.00968.
    PubMed     Abstract available

    August 2019
  52. NACCACHE SN, Callan K, Burnham CA, Wallace MA, et al
    Evaluation of Oxacillin and Cefoxitin Disk Diffusion and Microbroth Dilution Methods for Detecting mecA-mediated beta-lactam Resistance in Contemporary Staphylococcus epidermidis Isolates.
    J Clin Microbiol. 2019 Aug 28. pii: JCM.00961-19. doi: 10.1128/JCM.00961.
    PubMed     Abstract available

  53. FERNANDEZ-HUERTA M, Bodiyabadu K, Esperalba J, Bradshaw CS, et al
    Multicenter clinical evaluation of a novel multiplex real-time PCR (qPCR) assay for detection of fluoroquinolone resistance in Mycoplasma genitalium.
    J Clin Microbiol. 2019 Aug 21. pii: JCM.00886-19. doi: 10.1128/JCM.00886.
    PubMed     Abstract available

  54. NG KCS, Supply P, Cobelens FGJ, Gaudin C, et al
    How well do routine molecular diagnostics detect rifampicin heteroresistance in Mycobacterium tuberculosis?
    J Clin Microbiol. 2019 Aug 14. pii: JCM.00717-19. doi: 10.1128/JCM.00717.
    PubMed     Abstract available

    July 2019
  55. KHAN A, Rivas LM, Spencer M, Martinez R, et al
    A Multicenter Study to Evaluate Ceftaroline Breakpoints: Performance in An Area with High Prevalence of Methicillin-Resistant Staphylococcus aureus ST5 Lineage.
    J Clin Microbiol. 2019 Jul 17. pii: JCM.00798-19. doi: 10.1128/JCM.00798.
    PubMed     Abstract available

  56. WANG Q, Kontoyiannis DP, Li R, Chen W, et al
    A novel broad allele-specific Taqman real-time PCR method to detect triazole-resistant strains of Aspergillus fumigatus, even when in very low percentage of the triazole-resistant and -susceptible strain mixture.
    J Clin Microbiol. 2019 Jul 17. pii: JCM.00604-19. doi: 10.1128/JCM.00604.
    PubMed     Abstract available

    June 2019
  57. HO HJ, Tan MX, Chen MI, Tan TY, et al
    Interaction between Antibiotic Resistance, Resistance Genes and Treatment Response for Urinary Tract Infections in Primary Care.
    J Clin Microbiol. 2019 Jun 26. pii: JCM.00143-19. doi: 10.1128/JCM.00143.
    PubMed     Abstract available

  58. TAM KK, Leung KS, Siu GK, Chang KC, et al
    Direct detection of pyrazinamide resistance of Mycobacterium tuberculosis using pncA PCR Sequencing.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00145-19. doi: 10.1128/JCM.00145.
    PubMed     Abstract available

  59. FU Y, Zeng Y, Chen T, Chen H, et al
    Characterization and Clinical Significance of Natural Variability in Hepatitis B Virus Reverse Transcriptase in Treatment-naive Chinese Patients by Sanger Sequencing and Next-generation Sequencing.
    J Clin Microbiol. 2019 Jun 12. pii: JCM.00119-19. doi: 10.1128/JCM.00119.
    PubMed     Abstract available

    May 2019
  60. O'DEA M, Sahibzada S, Jordan D, Laird T, et al
    Genomic, antimicrobial resistance and public health insights into Enterococcus spp. from Australian chickens.
    J Clin Microbiol. 2019 May 22. pii: JCM.00319-19. doi: 10.1128/JCM.00319.
    PubMed     Abstract available

  61. NEZAMI BG, Jani M, Alouani D, Rhoads D, et al
    Helicobacter pylori Mutations Detected by Next-Generation Sequencing in Formalin-Fixed Paraffin Embedded Gastric Biopsies are Associated with Treatment Failure.
    J Clin Microbiol. 2019 May 8. pii: JCM.01834-18. doi: 10.1128/JCM.01834.
    PubMed     Abstract available

  62. LIMA A, Widen R, Vestal G, Uy D, et al
    A TaqMan Probe-based Real-Time PCR Assay for the Rapid Identification of the Emerging Multidrug-Resistant Candida auris on the BD MAX System.
    J Clin Microbiol. 2019 May 8. pii: JCM.01604-18. doi: 10.1128/JCM.01604.
    PubMed     Abstract available

    April 2019
  63. CHO SY, Lee DG, Kim WB, Chun HS, et al
    Epidemiology and antifungal susceptibility profile of Aspergillus species: comparison between environmental and clinical isolates from patients with hematologic malignancies.
    J Clin Microbiol. 2019 Apr 24. pii: JCM.02023-18. doi: 10.1128/JCM.02023.
    PubMed     Abstract available

    March 2019
  64. CHENG MP, Lawandi A, Lee TC, Dufresne PJ, et al
    Triazole Antifungal Susceptibility Patterns among Aspergillus species in Quebec, Canada.
    J Clin Microbiol. 2019 Mar 27. pii: JCM.00404-19. doi: 10.1128/JCM.00404.
    PubMed     Abstract available

  65. MACFADDEN DR, Melano RG, Coburn B, Tijet N, et al
    Comparing Patient Risk Factors, Sequence Type, and Resistance Loci Identification Approaches for Predicting Antibiotic Resistance in Escherichia coli Bloodstream Infections.
    J Clin Microbiol. 2019 Mar 20. pii: JCM.01780-18. doi: 10.1128/JCM.01780.
    PubMed     Abstract available

  66. KUBANOV A, Solomka V, Plakhova X, Chestkov A, et al
    Summary and Trends of the Russian Gonococcal Antimicrobial Surveillance Programme, 2005-2016.
    J Clin Microbiol. 2019 Mar 20. pii: JCM.02024-18. doi: 10.1128/JCM.02024.
    PubMed     Abstract available

  67. BOWLER SL, Towne JW, Humphries RM, Doi Y, et al
    Evaluation of the Accelerate Pheno System for Identification of Acinetobacter Clinical Isolates and Minocycline Susceptibility Testing.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

    February 2019
  68. WELSH RM, Sexton DJ, Forsberg K, Vallabhaneni S, et al
    Insights into the Unique Nature of the East Asian Clade of the Emerging Pathogenic Yeast, Candida auris.
    J Clin Microbiol. 2019 Feb 13. pii: JCM.00007-19. doi: 10.1128/JCM.00007.
    PubMed     Abstract available

  69. HAN B, Parhy B, Zhou E, Hsieh D, et al
    In vitro Susceptibility of HCV Genotype 1 through 6 Clinical Isolates to the Pan-genotypic NS3/4A Inhibitor Voxilaprevir.
    J Clin Microbiol. 2019 Feb 6. pii: JCM.01844-18. doi: 10.1128/JCM.01844.
    PubMed     Abstract available

  70. KWON YJ, Shin JH, Byeon SA, Choi MJ, et al
    Candida auris Clinical Isolates from South Korea: Identification, Antifungal Susceptibility, and Genotyping.
    J Clin Microbiol. 2019 Feb 6. pii: JCM.01624-18. doi: 10.1128/JCM.01624.
    PubMed     Abstract available

  71. YAN Q, Wi YM, Thoendel MJ, Raval YS, et al
    Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

  72. NGUYEN M, Long SW, McDermott PF, Olsen RJ, et al
    Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

    January 2019
  73. SALAH M, Shtayeh I, Ghneim R, Al-Qass R, et al
    Evaluation of Shigella species Azithromycin CLSI Epidemiological Cutoff Values and Macrolide Resistance Genes.
    J Clin Microbiol. 2019 Jan 30. pii: JCM.01422-18. doi: 10.1128/JCM.01422.
    PubMed     Abstract available

  74. HU P, Zhang H, Fleming J, Zhu G, et al
    Retrospective analysis of false-positive and disputed rifampin resistance Xpert MTB/RIF assay results in clinical samples from a referral hospital in Hunan, China.
    J Clin Microbiol. 2019 Jan 23. pii: JCM.01707-18. doi: 10.1128/JCM.01707.
    PubMed     Abstract available

  75. SWEENEY EL, Trembizki E, Bletchly C, Bradshaw CS, et al
    Levels of Mycoplasma genitalium antimicrobial resistance differ by both region and gender in the state of Queensland, Australia: implications for treatment guidelines.
    J Clin Microbiol. 2019 Jan 2. pii: JCM.01555-18. doi: 10.1128/JCM.01555.
    PubMed     Abstract available

  76. JOSTE V, Gyde E, Toullec L, Courboules C, et al
    Enterococcus faecium and ampicillin susceptibility determination: overestimation of resistance with disk diffusion method using ampicillin 2 microg?
    J Clin Microbiol. 2019 Jan 2. pii: JCM.01467-18. doi: 10.1128/JCM.01467.
    PubMed     Abstract available

  77. KATIYO S, Muller-Pebody B, Minaji M, Powell D, et al
    Epidemiology and Outcomes of Nontyphoidal Salmonella Bacteremias from England, 2004 to 2015.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

  78. NORDMANN P, Poirel L, Mueller L
    Rapid Detection of Fosfomycin Resistance in Escherichia coli.
    J Clin Microbiol. 2019;57.
    PubMed     Abstract available

  79. FONTANA L, Bonura E, Lyski Z, Messer W, et al
    Closing the Brief Case: Klebsiella variicola-Identifying the Misidentified.
    J Clin Microbiol. 2019;57.

    December 2018
  80. OPOTA O, Zakham F, Mazza-Stalder J, Nicod L, et al
    Added-value of Xpert MTB/RIF Ultra for the diagnosis of pulmonary tuberculosis in a low prevalence setting.
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    Fungemia Surveillance in Denmark Demonstrates Emergence of Candida non-albicans, Higher Antifungal Usage and Resistance Rates When Compared to Other Nations.
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