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Free Subscription Articles published in PLoS Comput Biol Retrieve available abstracts of 66 articles: HTML format

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September 2025
1. PATTON A, Davidsen J
   Changing cognitive chimera states in human brain networks with age: Variations in cognitive integration and segregation.
   PLoS Comput Biol. 2025;21:e1013093.
   PubMed     Abstract available
   
   
   
2. CALKA M, Badin P, Nazari MA, Rochette M, et al
   The G-OBIM tongue model: An accurate open-source biomechanical model of a male human tongue.
   PLoS Comput Biol. 2025;21:e1013378.
   PubMed     Abstract available
   
   
   
3. ST-YVES G, Kay K, Naselaris T
   Variation in the geometry of concept manifolds across human visual cortex.
   PLoS Comput Biol. 2025;21:e1013416.
   PubMed     Abstract available
   
   
   
4. XU Y, Prat CS, Sense F, van Rijn H, et al
   Default mode network connectivity predicts individual differences in long-term forgetting: Evidence for storage degradation, not retrieval failure.
   PLoS Comput Biol. 2025;21:e1013485.
   PubMed     Abstract available
   
   
   
5. JACOB LPL, Bailes SM, Williams SD, Stringer C, et al
   Brainwide hemodynamics predict EEG neural rhythms across sleep and wakefulness in humans.
   PLoS Comput Biol. 2025;21:e1013497.
   PubMed     Abstract available
   
   
   August 2025
6. KRUPER J, Richie-Halford A, Qiao J, Gilmore A, et al
   A software ecosystem for brain tractometry processing, analysis, and insight.
   PLoS Comput Biol. 2025;21:e1013323.
   PubMed     Abstract available
   
   
   
7. LI L, Uriyanghai U, Wai C, Yuan H, et al
   Temporal evolution of hemodynamics in murine arteriovenous fistula: A micro-CT based CFD study.
   PLoS Comput Biol. 2025;21:e1012985.
   PubMed     Abstract available
   
   
   July 2025
8. KAYYALI M, Minchole A, Qian S, Young A, et al
   Anatomical-electrical coupling of cardiac axes: Definitions and population variability for advancing personalised ECG interpretation.
   PLoS Comput Biol. 2025;21:e1013161.
   PubMed     Abstract available
   
   
   
9. KAY K, Prince JS, Gebhart T, Tuckute G, et al
   Disentangling signal and noise in neural responses through generative modeling.
   PLoS Comput Biol. 2025;21:e1012092.
   PubMed     Abstract available
   
   
   
10. XIAO J, Yin Q, Li L, Meng Y, et al
    Tracking causal pathways in TMS-evoked brain responses.
    PLoS Comput Biol. 2025;21:e1013316.
    PubMed     Abstract available
    
    
    
11. THEIS S, Mendieta-Serrano MA, Chapa-Y-Lazo B, Chen J, et al
    CellMet: Extracting 3D shape and topology metrics from confluent cells within tissues.
    PLoS Comput Biol. 2025;21:e1013260.
    PubMed     Abstract available
    
    
    June 2025
12. STIKVOORT W, Perez-Ordoyo E, Mindlin I, Escrichs A, et al
    Nonequilibrium brain dynamics elicited as the origin of perturbative complexity.
    PLoS Comput Biol. 2025;21:e1013150.
    PubMed     Abstract available
    
    
    
13. BAKER MR, Klassen BT, Jensen MA, Ojeda Valencia G, et al
    Parameterization of intraoperative human microelectrode recordings: Linking action potential morphology to brain anatomy.
    PLoS Comput Biol. 2025;21:e1013184.
    PubMed     Abstract available
    
    
    
14. KANDASAMY A, Yeh YT, Serrano R, Mercola M, et al
    Uncertainty-aware traction force microscopy.
    PLoS Comput Biol. 2025;21:e1013079.
    PubMed     Abstract available
    
    
    May 2025
15. BOTVINIK-NEZER R, Geuter S, Lindquist MA, Wager TD, et al
    Expectation generation and its effect on subsequent pain and visual perception.
    PLoS Comput Biol. 2025;21:e1013053.
    PubMed     Abstract available
    
    
    
16. O'CONNOR OM, Dunlop MJ
    Cell-TRACTR: A transformer-based model for end-to-end segmentation and tracking of cells.
    PLoS Comput Biol. 2025;21:e1013071.
    PubMed     Abstract available
    
    
    
17. VILLANUEVA-BAXARIAS I, Pellise-Tintore A, Perez-Rodriguez M, Nogue L, et al
    Understanding the hemodynamic changes in fetuses with coarctation of the aorta using a lumped model of fetal circulation.
    PLoS Comput Biol. 2025;21:e1013096.
    PubMed     Abstract available
    
    
    
18. ZHAN Y, Musella F, Alber F
    MaxComp: Predicting single-cell chromatin compartments from 3D chromosome structures.
    PLoS Comput Biol. 2025;21:e1013114.
    PubMed     Abstract available
    
    
    
19. YAMANE Y, Li Y, Matsumoto K, Kanai R, et al
    Optical Neuroimage Studio (OptiNiSt): Intuitive, scalable, extendable framework for optical neuroimage data analysis.
    PLoS Comput Biol. 2025;21:e1013087.
    PubMed     Abstract available
    
    
    
20. SCHNITZERLEIN M, Greto E, Wegner A, Moller A, et al
    Cellular morphodynamics as quantifiers for functional states of resident tissue macrophages in vivo.
    PLoS Comput Biol. 2025;21:e1011859.
    PubMed     Abstract available
    
    
    April 2025
21. HICKL V, Khan A, Rossi RM, Silva BFB, et al
    Segmentation of dense and multi-species bacterial colonies using models trained on synthetic microscopy images.
    PLoS Comput Biol. 2025;21:e1012874.
    PubMed     Abstract available
    
    
    
22. BARJUAN L, Zheng M, Serrano MA
    The multiscale self-similarity of the weighted human brain connectome.
    PLoS Comput Biol. 2025;21:e1012848.
    PubMed     Abstract available
    
    
    
23. LEIBOVICH N, Goyal S
    Limitations and optimizations of cellular lineages tracking.
    PLoS Comput Biol. 2025;21:e1012880.
    PubMed     Abstract available
    
    
    
24. GRABOT L, Merholz G, Winawer J, Heeger DJ, et al
    Traveling waves in the human visual cortex: An MEG-EEG model-based approach.
    PLoS Comput Biol. 2025;21:e1013007.
    PubMed     Abstract available
    
    
    
25. VRIENS T, Vassena E, Pezzulo G, Baldassarre G, et al
    Meta-Reinforcement Learning reconciles surprise, value, and control in the anterior cingulate cortex.
    PLoS Comput Biol. 2025;21:e1013025.
    PubMed     Abstract available
    
    
    
26. KE J, Song H, Bai Z, Rosenberg MD, et al
    Dynamic brain connectivity predicts emotional arousal during naturalistic movie-watching.
    PLoS Comput Biol. 2025;21:e1012994.
    PubMed     Abstract available
    
    
    March 2025
27. ALTERIIS G, Sherwood O, Ciaramella A, Leech R, et al
    DySCo: A general framework for dynamic functional connectivity.
    PLoS Comput Biol. 2025;21:e1012795.
    PubMed     Abstract available
    
    
    
28. SIGALAS E, Libedinsky C
    Mixed recurrent connectivity in primate prefrontal cortex.
    PLoS Comput Biol. 2025;21:e1012867.
    PubMed     Abstract available
    
    
    
29. WANG Z, Yang Y, Huang Z, Zhao W, et al
    Exploring the transmission of cognitive task information through optimal brain pathways.
    PLoS Comput Biol. 2025;21:e1012870.
    PubMed     Abstract available
    
    
    
30. DINNAGE R, Kleineberg M
    Generative AI extracts ecological meaning from the complex three dimensional shapes of bird bills.
    PLoS Comput Biol. 2025;21:e1012887.
    PubMed     Abstract available
    
    
    
31. WANG T, Quast C, Bonner F, Kelm M, et al
    Investigation of hemodynamic bulk flow patterns caused by aortic stenosis using a combined 4D Flow MRI-CFD framework.
    PLoS Comput Biol. 2025;21:e1012467.
    PubMed     Abstract available
    
    
    January 2025
32. BEN MESSAOUD R, Le Du V, Bousfiha C, Corsi MC, et al
    Low-dimensional controllability of brain networks.
    PLoS Comput Biol. 2025;21:e1012691.
    PubMed     Abstract available
    
    
    
33. BADROU A, Mariano CA, Ramirez GO, Shankel M, et al
    Towards constructing a generalized structural 3D breathing human lung model based on experimental volumes, pressures, and strains.
    PLoS Comput Biol. 2025;21:e1012680.
    PubMed     Abstract available
    
    
    
34. REN P, Cui X, Liang X
    Connectome-based biophysical models of pathological protein spreading in neurodegenerative diseases.
    PLoS Comput Biol. 2025;21:e1012743.
    PubMed     Abstract available
    
    
    
35. GROS O, Passmore JB, Borst NO, Kutra D, et al
    Spherical harmonics texture extraction for versatile analysis of biological objects.
    PLoS Comput Biol. 2025;21:e1012349.
    PubMed     Abstract available
    
    
    December 2024
36. FORRESTER M, Petros S, Cattell O, Lai YM, et al
    Whole brain functional connectivity: Insights from next generation neural mass modelling incorporating electrical synapses.
    PLoS Comput Biol. 2024;20:e1012647.
    PubMed     Abstract available
    
    
    
37. VANSLAMBROUCK M, Thiels W, Vangheel J, van Bavel C, et al
    Image-based force inference by biomechanical simulation.
    PLoS Comput Biol. 2024;20:e1012629.
    PubMed     Abstract available
    
    
    
38. YUAN M, Goovaerts S, Vanneste M, Matthews H, et al
    Mapping genes for human face shape: Exploration of univariate phenotyping strategies.
    PLoS Comput Biol. 2024;20:e1012617.
    PubMed     Abstract available
    
    
    
39. STASINSKI J, Taher H, Meier JM, Schirner M, et al
    Homeodynamic feedback inhibition control in whole-brain simulations.
    PLoS Comput Biol. 2024;20:e1012595.
    PubMed     Abstract available
    
    
    
40. CELIKER E, Woodrow C, Guadayol O, Davranoglou LR, et al
    Mechanical network equivalence between the katydid and mammalian inner ears.
    PLoS Comput Biol. 2024;20:e1012641.
    PubMed     Abstract available
    
    
    
41. KANG J, Park HJ
    Integration of partially observed multimodal and multiscale neural signals for estimating a neural circuit using dynamic causal modeling.
    PLoS Comput Biol. 2024;20:e1012655.
    PubMed     Abstract available
    
    
    
42. BRYANT AG, Aquino K, Parkes L, Fornito A, et al
    Extracting interpretable signatures of whole-brain dynamics through systematic comparison.
    PLoS Comput Biol. 2024;20:e1012692.
    PubMed     Abstract available
    
    
    October 2024
43. CHEN L, Huang ZH, Sun Y, Domaratzki M, et al
    Conditional probabilistic diffusion model driven synthetic radiogenomic applications in breast cancer.
    PLoS Comput Biol. 2024;20:e1012490.
    PubMed     Abstract available
    
    
    
44. ISHAR J, Tam YM, Mages S, Klughammer J, et al
    BoReMi: Bokeh-based jupyter-interface for registering spatio-molecular data to related microscopy images.
    PLoS Comput Biol. 2024;20:e1012504.
    PubMed     Abstract available
    
    
    
45. RANJAN A, Swain JK, Ahluwalia BS, Melandso F, et al
    3-D Visualization of Atlantic salmon skin through Ultrasound and Photoacoustic Microscopy.
    PLoS Comput Biol. 2024;20:e1011709.
    PubMed     Abstract available
    
    
    
46. YU S, Wu J, Shao Y, Qiu D, et al
    A novel classification framework for genome-wide association study of whole brain MRI images using deep learning.
    PLoS Comput Biol. 2024;20:e1012527.
    PubMed     Abstract available
    
    
    
47. COCUZZA CV, Sanchez-Romero R, Ito T, Mill RD, et al
    Distributed network flows generate localized category selectivity in human visual cortex.
    PLoS Comput Biol. 2024;20:e1012507.
    PubMed     Abstract available
    
    
    September 2024
48. FRANCO JP, Bossaerts P, Murawski C
    The neural dynamics associated with computational complexity.
    PLoS Comput Biol. 2024;20:e1012447.
    PubMed     Abstract available
    
    
    August 2024
49. RAMOS JDS, Vieira IHP, Rocha WS, Esquerdo RP, et al
    A transfer learning approach to identify Plasmodium in microscopic images.
    PLoS Comput Biol. 2024;20:e1012327.
    PubMed     Abstract available
    
    
    
50. GUNNARSSON EB, Kim S, Choi B, Schmid JK, et al
    Understanding patient-derived tumor organoid growth through an integrated imaging and mathematical modeling framework.
    PLoS Comput Biol. 2024;20:e1012256.
    PubMed     Abstract available
    
    
    
51. DEAN WF, Nawara TJ, Albert RM, Mattheyses AL, et al
    OOPS: Object-Oriented Polarization Software for analysis of fluorescence polarization microscopy images.
    PLoS Comput Biol. 2024;20:e1011723.
    PubMed     Abstract available
    
    
    
52. MAHJOORY K, Bahmer A, Henry MJ
    Convolutional neural networks can identify brain interactions involved in decoding spatial auditory attention.
    PLoS Comput Biol. 2024;20:e1012376.
    PubMed     Abstract available
    
    
    
53. SEELER D, Grdseloff N, Rodel CJ, Kloft C, et al
    Novel mathematical approach to accurately quantify 3D endothelial cell morphology and vessel geometry based on fluorescently marked endothelial cell contours: Application to the dorsal aorta of wild-type and Endoglin-deficient zebrafish embryos.
    PLoS Comput Biol. 2024;20:e1011924.
    PubMed     Abstract available
    
    
    July 2024
54. CHEN AA, Clark K, Dewey BE, DuVal A, et al
    PARE: A framework for removal of confounding effects from any distance-based dimension reduction method.
    PLoS Comput Biol. 2024;20:e1012241.
    PubMed     Abstract available
    
    
    June 2024
55. SANDA P, Hlinka J, van den Berg M, Skoch A, et al
    Cholinergic modulation supports dynamic switching of resting state networks through selective DMN suppression.
    PLoS Comput Biol. 2024;20:e1012099.
    PubMed     Abstract available
    
    
    
56. YAO T, Pajaziti E, Quail M, Schievano S, et al
    Image2Flow: A proof-of-concept hybrid image and graph convolutional neural network for rapid patient-specific pulmonary artery segmentation and CFD flow field calculation from 3D cardiac MRI data.
    PLoS Comput Biol. 2024;20:e1012231.
    PubMed     Abstract available
    
    
    May 2024
57. DAGNINO PC, Escrichs A, Lopez-Gonzalez A, Gosseries O, et al
    Re-awakening the brain: Forcing transitions in disorders of consciousness by external in silico perturbation.
    PLoS Comput Biol. 2024;20:e1011350.
    PubMed     Abstract available
    
    
    
58. CHUNG MK, Huang SG, Carroll IC, Calhoun VD, et al
    Topological state-space estimation of functional human brain networks.
    PLoS Comput Biol. 2024;20:e1011869.
    PubMed     Abstract available
    
    
    
59. RYU J, Nejatbakhsh A, Torkashvand M, Gangadharan S, et al
    Versatile multiple object tracking in sparse 2D/3D videos via deformable image registration.
    PLoS Comput Biol. 2024;20:e1012075.
    PubMed     Abstract available
    
    
    
60. CONTE M, Woodall RT, Gutova M, Chen BT, et al
    Structural and practical identifiability of contrast transport models for DCE-MRI.
    PLoS Comput Biol. 2024;20:e1012106.
    PubMed     Abstract available
    
    
    March 2024
61. TOYOSHIMA Y, Sato H, Nagata D, Kanamori M, et al
    Ensemble dynamics and information flow deduction from whole-brain imaging data.
    PLoS Comput Biol. 2024;20:e1011848.
    PubMed     Abstract available
    
    
    
62. LIU P, Bo K, Ding M, Fang R, et al
    Emergence of Emotion Selectivity in Deep Neural Networks Trained to Recognize Visual Objects.
    PLoS Comput Biol. 2024;20:e1011943.
    PubMed     Abstract available
    
    
    
63. WANG HT, Meisler SL, Sharmarke H, Clarke N, et al
    Continuous evaluation of denoising strategies in resting-state fMRI connectivity using fMRIPrep and Nilearn.
    PLoS Comput Biol. 2024;20:e1011942.
    PubMed     Abstract available
    
    
    February 2024
64. CHEN LD, Caprio MA, Chen DM, Kouba AJ, et al
    Enhancing predictive performance for spectroscopic studies in wildlife science through a multi-model approach: A case study for species classification of live amphibians.
    PLoS Comput Biol. 2024;20:e1011876.
    PubMed     Abstract available
    
    
    
65. ESCHWEILER D, Yilmaz R, Baumann M, Laube I, et al
    Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets.
    PLoS Comput Biol. 2024;20:e1011890.
    PubMed     Abstract available
    
    
    
66. SOULOS P, Isik L
    Disentangled deep generative models reveal coding principles of the human face processing network.
    PLoS Comput Biol. 2024;20:e1011887.
    PubMed     Abstract available
    
    

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