NAIplot: An opensource web tool to visualize neuraminidase inhibitor (NAI) phenotypic susceptibility results using kernel density plots

Antiviral Res. 2016 Feb:126:18-20. doi: 10.1016/j.antiviral.2015.12.002. Epub 2015 Dec 12.

Abstract

The results of neuraminidase inhibitor (NAI) enzyme inhibition assays are commonly expressed as 50% inhibitory concentration (IC50) fold-change values and presented graphically in box plots (box-and-whisker plots). An alternative and more informative type of graph is the kernel density plot, which we propose should be the preferred one for this purpose. In this paper we discuss the limitations of box plots and the advantages of the kernel density plot, and we present NAIplot, an opensource web application that allows convenient creation of density plots specifically for visualizing the results of NAI enzyme inhibition assays, as well as for general purposes.

Keywords: Antiviral susceptibility; Bimodality; Box plot; Density plot; Inhibitory concentration; Neuraminidase inhibitor.

MeSH terms

  • Antiviral Agents / pharmacology*
  • Computer Graphics
  • Enzyme Assays
  • Enzyme Inhibitors / pharmacology*
  • Humans
  • Influenza A Virus, H1N1 Subtype / drug effects
  • Influenza A Virus, H1N1 Subtype / enzymology
  • Influenza B virus / drug effects
  • Influenza, Human / drug therapy
  • Influenza, Human / virology
  • Inhibitory Concentration 50
  • Internet*
  • Microbial Sensitivity Tests
  • Neuraminidase / antagonists & inhibitors*
  • Oseltamivir / pharmacology
  • Zanamivir / pharmacology

Substances

  • Antiviral Agents
  • Enzyme Inhibitors
  • Oseltamivir
  • Neuraminidase
  • Zanamivir