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2049 Chinese

The 20K Word Road to Mandarin Proficiency

By B. S. Kamps et al.


  Genetics

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Articles published in Proc Natl Acad Sci U S A

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Single Articles


    March 2024
  1. KEHLET-DELGADO H, Montoya AP, Jensen KT, Wendlandt CE, et al
    The evolutionary genomics of adaptation to stress in wild rhizobium bacteria.
    Proc Natl Acad Sci U S A. 2024;121:e2311127121.
    PubMed     Abstract available


  2. SCHRAIBER JG, Edge MD
    Heritability within groups is uninformative about differences among groups: Cases from behavioral, evolutionary, and statistical genetics.
    Proc Natl Acad Sci U S A. 2024;121:e2319496121.
    PubMed     Abstract available


  3. GROH JS, Coop G
    The temporal and genomic scale of selection following hybridization.
    Proc Natl Acad Sci U S A. 2024;121:e2309168121.
    PubMed     Abstract available


  4. BORETTO M, Geurts MH, Gandhi S, Ma Z, et al
    Epidermal growth factor receptor (EGFR) is a target of the tumor-suppressor E3 ligase FBXW7.
    Proc Natl Acad Sci U S A. 2024;121:e2309902121.
    PubMed     Abstract available


  5. KRUEGER J, Preusse M, Oswaldo Gomez N, Frommeyer YN, et al
    tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa.
    Proc Natl Acad Sci U S A. 2024;121:e2312874121.
    PubMed     Abstract available


  6. SIMOES LG, Peyroteo-Stjerna R, Marchand G, Bernhardsson C, et al
    Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France.
    Proc Natl Acad Sci U S A. 2024;121:e2310545121.
    PubMed     Abstract available


  7. MOROMIZATO R, Fukuda K, Suzuki S, Motomura T, et al
    Pyrenoid proteomics reveals independent evolution of the CO(2)-concentrating organelle in chlorarachniophytes.
    Proc Natl Acad Sci U S A. 2024;121:e2318542121.
    PubMed     Abstract available


    February 2024
  8. KEROACK CD, Elsworth B, Tennessen JA, Paul AS, et al
    Comparative chemical genomics in Babesia species identifies the alkaline phosphatase PhoD as a determinant of antiparasitic resistance.
    Proc Natl Acad Sci U S A. 2024;121:e2312987121.
    PubMed     Abstract available


  9. LUKHTANOV VA
    Polytypic species concept and subspecies in the genomic era.
    Proc Natl Acad Sci U S A. 2024;121:e2317038121.
    PubMed    


  10. SIMON A, Coop G
    The contribution of gene flow, selection, and genetic drift to five thousand years of human allele frequency change.
    Proc Natl Acad Sci U S A. 2024;121:e2312377121.
    PubMed     Abstract available


  11. NOCH EK, Palma L, Yim I, Bullen N, et al
    Cysteine induces mitochondrial reductive stress in glioblastoma through hydrogen peroxide production.
    Proc Natl Acad Sci U S A. 2024;121:e2317343121.
    PubMed     Abstract available


  12. PHUNG TK, Berndsen K, Shastry R, Phan TLCHB, et al
    CURTAIN-A unique web-based tool for exploration and sharing of MS-based proteomics data.
    Proc Natl Acad Sci U S A. 2024;121:e2312676121.
    PubMed     Abstract available


  13. YI T, Wagner G
    Malignant tumor cells engender second membrane-lined organelles for self-protection and tumor progression.
    Proc Natl Acad Sci U S A. 2024;121:e2317141121.
    PubMed     Abstract available


  14. SPRINGSTEIN BL, Paulo JA, Park H, Henry K, et al
    Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics.
    Proc Natl Acad Sci U S A. 2024;121:e2317453121.
    PubMed     Abstract available


  15. BAXI AB, Li J, Quach VM, Pade LR, et al
    Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer.
    Proc Natl Acad Sci U S A. 2024;121:e2311625121.
    PubMed     Abstract available


    January 2024
  16. CAMACHO-MATEU J, Lampo A, Sireci M, Munoz MA, et al
    Sparse species interactions reproduce abundance correlation patterns in microbial communities.
    Proc Natl Acad Sci U S A. 2024;121:e2309575121.
    PubMed     Abstract available


  17. SUTTER PA, Willis CM, Menoret A, Nicaise AM, et al
    Astrocytic TIMP-1 regulates production of Anastellin, an inhibitor of oligodendrocyte differentiation and FTY720 responses.
    Proc Natl Acad Sci U S A. 2024;121:e2306816121.
    PubMed     Abstract available


  18. LI C, Wickell D, Kuo LY, Chen X, et al
    Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes.
    Proc Natl Acad Sci U S A. 2024;121:e2312607121.
    PubMed     Abstract available


  19. ZHANG Y, Zhang H, Wu Y
    A general approach for inferring the ancestry of recent ancestors of an admixed individual.
    Proc Natl Acad Sci U S A. 2024;121:e2316242120.
    PubMed     Abstract available


  20. YUAN J, Kitchener AC, Lackey LB, Sun T, et al
    The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids.
    Proc Natl Acad Sci U S A. 2024;121:e2310763120.
    PubMed     Abstract available


  21. VAUGHAN TG, Scire J, Nadeau SA, Stadler T, et al
    Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data.
    Proc Natl Acad Sci U S A. 2024;121:e2308125121.
    PubMed     Abstract available


    December 2023
  22. WEN J, Nasrallah IM, Abdulkadir A, Satterthwaite TD, et al
    Genomic loci influence patterns of structural covariance in the human brain.
    Proc Natl Acad Sci U S A. 2023;120:e2300842120.
    PubMed     Abstract available


  23. ZHU S, Liu J, Patel V, Zhao X, et al
    Antigen exposure reshapes chromatin architecture in central memory CD8(+) T cells and imprints enhanced recall capacity.
    Proc Natl Acad Sci U S A. 2023;120:e2313476120.
    PubMed     Abstract available


  24. SKAAR EP
    Biogeography of the genus Staphylococci on human skin.
    Proc Natl Acad Sci U S A. 2023;120:e2318509120.
    PubMed    


  25. ZHONG X, Moresco JJ, Diedrich JK, Pinto AM, et al
    Essential role of MFSD1-GLMP-GIMAP5 in lymphocyte survival and liver homeostasis.
    Proc Natl Acad Sci U S A. 2023;120:e2314429120.
    PubMed     Abstract available


  26. BLANCO-PASTOR JL
    Inclusion of highly admixed genotypes in grapevine genomic analyses leads to an equivocal reconstruction of its domestication history.
    Proc Natl Acad Sci U S A. 2023;120:e2310026120.
    PubMed    


  27. JIN L, Chen Y, Muzaffar S, Li C, et al
    Epigenetic switch reshapes epithelial progenitor cell signatures and drives inflammatory pathogenesis in hidradenitis suppurativa.
    Proc Natl Acad Sci U S A. 2023;120:e2315096120.
    PubMed     Abstract available


    November 2023
  28. ESPINOZA B, Adiga A, Venkatramanan S, Warren AS, et al
    Coupled models of genomic surveillance and evolving pandemics with applications for timely public health interventions.
    Proc Natl Acad Sci U S A. 2023;120:e2305227120.
    PubMed     Abstract available


  29. TORRES ROBLES J, Lou HJ, Shi G, Pan PL, et al
    Linear motif specificity in signaling through p38alpha and ERK2 mitogen-activated protein kinases.
    Proc Natl Acad Sci U S A. 2023;120:e2316599120.
    PubMed     Abstract available


  30. SIMMONS M, Horbelt N, Sverko T, Scoppola E, et al
    Invasive mussels fashion silk-like byssus via mechanical processing of massive horizontally acquired coiled coils.
    Proc Natl Acad Sci U S A. 2023;120:e2311901120.
    PubMed     Abstract available


  31. JOGLEKAR P, Conlan S, Lee-Lin SQ, Deming C, et al
    Integrated genomic and functional analyses of human skin-associated Staphylococcus reveal extensive inter- and intra-species diversity.
    Proc Natl Acad Sci U S A. 2023;120:e2310585120.
    PubMed     Abstract available


  32. HU W, Zhang R, Xu H, Li Y, et al
    CAMSAP1 role in orchestrating structure and dynamics of manchette microtubule minus-ends impacts male fertility during spermiogenesis.
    Proc Natl Acad Sci U S A. 2023;120:e2313787120.
    PubMed     Abstract available


    October 2023
  33. BENEGAS G, Batra SS, Song YS
    DNA language models are powerful predictors of genome-wide variant effects.
    Proc Natl Acad Sci U S A. 2023;120:e2311219120.
    PubMed     Abstract available


  34. CAO X, Kose C, Selby CP, Sancar A, et al
    In vitro DNA repair genomics using XR-seq with Escherichia coli and mammalian cell-free extracts.
    Proc Natl Acad Sci U S A. 2023;120:e2314233120.
    PubMed     Abstract available


  35. MATHUR S, Mason AJ, Bradburd GS, Gibbs HL, et al
    Functional genomic diversity is correlated with neutral genomic diversity in populations of an endangered rattlesnake.
    Proc Natl Acad Sci U S A. 2023;120:e2303043120.
    PubMed     Abstract available


  36. XIE Y, Ersan S, Guan X, Wang J, et al
    Unexpected metabolic rewiring of CO(2) fixation in H(2)-mediated materials-biology hybrids.
    Proc Natl Acad Sci U S A. 2023;120:e2308373120.
    PubMed     Abstract available


  37. LIAO SE, Sudarshan M, Regev O
    Deciphering RNA splicing logic with interpretable machine learning.
    Proc Natl Acad Sci U S A. 2023;120:e2221165120.
    PubMed     Abstract available


  38. DUFRESNES C, Poyarkov N, Jablonski D
    Acknowledging more biodiversity without more species.
    Proc Natl Acad Sci U S A. 2023;120:e2302424120.
    PubMed     Abstract available


  39. GU TT, Wu H, Yang F, Gaubert P, et al
    Genomic analysis reveals a cryptic pangolin species.
    Proc Natl Acad Sci U S A. 2023;120:e2304096120.
    PubMed     Abstract available


    September 2023
  40. ROTHMAN JE
    Starting at Go: Protein structure prediction succumbs to machine learning.
    Proc Natl Acad Sci U S A. 2023;120:e2311128120.
    PubMed     Abstract available


  41. MASON FM, Kounlavong ES, Tebeje AT, Dahiya R, et al
    SETD2 safeguards the genome against isochromosome formation.
    Proc Natl Acad Sci U S A. 2023;120:e2303752120.
    PubMed     Abstract available


  42. SIRECI M, Munoz MA, Grilli J
    Environmental fluctuations explain the universal decay of species-abundance correlations with phylogenetic distance.
    Proc Natl Acad Sci U S A. 2023;120:e2217144120.
    PubMed     Abstract available


  43. OH DH, Ma X, Hogg SJ, He J, et al
    Rationally designed chimeric PI3K-BET bromodomain inhibitors elicit curative responses in MYC-driven lymphoma.
    Proc Natl Acad Sci U S A. 2023;120:e2306414120.
    PubMed     Abstract available


  44. TAKAKURA M, Lam YH, Nakagawa R, Ng MY, et al
    Differential second messenger signaling via dopamine neurons bidirectionally regulates memory retention.
    Proc Natl Acad Sci U S A. 2023;120:e2304851120.
    PubMed     Abstract available


    August 2023
  45. TAN R, Hoare M, Welle KA, Swovick K, et al
    Folding stabilities of ribosome-bound nascent polypeptides probed by mass spectrometry.
    Proc Natl Acad Sci U S A. 2023;120:e2303167120.
    PubMed     Abstract available


  46. ZELLER MA, Ma J, Wong FY, Tum S, et al
    The genomic landscape of swine influenza A viruses in Southeast Asia.
    Proc Natl Acad Sci U S A. 2023;120:e2301926120.
    PubMed     Abstract available


  47. MANGIOLA S, Roth-Schulze AJ, Trussart M, Zozaya-Valdes E, et al
    sccomp: Robust differential composition and variability analysis for single-cell data.
    Proc Natl Acad Sci U S A. 2023;120:e2203828120.
    PubMed     Abstract available


  48. HUNG TH, So T, Thammavong B, Chamchumroon V, et al
    Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods.
    Proc Natl Acad Sci U S A. 2023;120:e2301603120.
    PubMed     Abstract available


  49. MEHROTRA T, Konar D, Pragasam AK, Kumar S, et al
    Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis.
    Proc Natl Acad Sci U S A. 2023;120:e2305465120.
    PubMed     Abstract available


  50. RUBINA A, Patel M, Nightingale K, Potts M, et al
    ADAM17 targeting by human cytomegalovirus remodels the cell surface proteome to simultaneously regulate multiple immune pathways.
    Proc Natl Acad Sci U S A. 2023;120:e2303155120.
    PubMed     Abstract available


  51. MALINVERNI D, Zamuner S, Rebeaud ME, Barducci A, et al
    Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins.
    Proc Natl Acad Sci U S A. 2023;120:e2218217120.
    PubMed     Abstract available


    July 2023
  52. FOKKENS L, Rep M
    Population genomics reveals meiotic recombination in Fusarium oxysporum.
    Proc Natl Acad Sci U S A. 2023;120:e2309677120.
    PubMed    


  53. DAVIDI L, Gallaher SD, Ben-David E, Purvine SO, et al
    Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management.
    Proc Natl Acad Sci U S A. 2023;120:e2305495120.
    PubMed     Abstract available


  54. CHARLES OJ, Venturini C, Gantt S, Atkinson C, et al
    Genomic and geographical structure of human cytomegalovirus.
    Proc Natl Acad Sci U S A. 2023;120:e2221797120.
    PubMed     Abstract available


  55. FUJIMURA T, Esteban R, Wickner RB
    Genomic fold of a "naked" ssRNA virus is critical for stability and propagation.
    Proc Natl Acad Sci U S A. 2023;120:e2309329120.
    PubMed    


  56. GU Z, Wang L, Dong Q, Xu K, et al
    Aberrant LYZ expression in tumor cells serves as the potential biomarker and target for HCC and promotes tumor progression via csGRP78.
    Proc Natl Acad Sci U S A. 2023;120:e2215744120.
    PubMed     Abstract available


  57. GARDNER EM, Bruun-Lund S, Niissalo M, Chantarasuwan B, et al
    Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs.
    Proc Natl Acad Sci U S A. 2023;120:e2222035120.
    PubMed     Abstract available


  58. VARGAS R JR, Luna MJ, Freschi L, Marin M, et al
    Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex.
    Proc Natl Acad Sci U S A. 2023;120:e2301394120.
    PubMed     Abstract available


  59. SARTORIO MG, Pardue EJ, Scott NE, Feldman MF, et al
    Human gut bacteria tailor extracellular vesicle cargo for the breakdown of diet- and host-derived glycans.
    Proc Natl Acad Sci U S A. 2023;120:e2306314120.
    PubMed     Abstract available


  60. FAYYAZ A, Robinson G, Chang PL, Bekele D, et al
    Hiding in plain sight: Genome-wide recombination and a dynamic accessory genome drive diversity in Fusarium oxysporum f.sp. ciceris.
    Proc Natl Acad Sci U S A. 2023;120:e2220570120.
    PubMed     Abstract available


    June 2023
  61. HASEGAWA N, Techer MA, Adjlane N, Al-Hissnawi MS, et al
    Evolutionarily diverse origins of deformed wing viruses in western honey bees.
    Proc Natl Acad Sci U S A. 2023;120:e2301258120.
    PubMed     Abstract available


  62. NOSIL P, Soria-Carrasco V, Villoutreix R, De-la-Mora M, et al
    Complex evolutionary processes maintain an ancient chromosomal inversion.
    Proc Natl Acad Sci U S A. 2023;120:e2300673120.
    PubMed     Abstract available


  63. HARRISON LB, Behr MA
    Mutation rates and the molecular epidemiology of Mycobacterium abscessus.
    Proc Natl Acad Sci U S A. 2023;120:e2307499120.
    PubMed    


  64. GOMEZ-BAENA G, Pounder KC, Halstead JO, Roberts SA, et al
    Unraveling female communication through scent marks in the Norway rat.
    Proc Natl Acad Sci U S A. 2023;120:e2300794120.
    PubMed     Abstract available


  65. KASUGA Y, Ouda R, Watanabe M, Sun X, et al
    FBXO11 constitutes a major negative regulator of MHC class II through ubiquitin-dependent proteasomal degradation of CIITA.
    Proc Natl Acad Sci U S A. 2023;120:e2218955120.
    PubMed     Abstract available


  66. XIAO H, Liu Z, Wang N, Long Q, et al
    Adaptive and maladaptive introgression in grapevine domestication.
    Proc Natl Acad Sci U S A. 2023;120:e2222041120.
    PubMed     Abstract available


  67. YOUNIS S, Jouneau A, Larsson M, Oudin JF, et al
    Ablation of ZC3H11A causes early embryonic lethality and dysregulation of metabolic processes.
    Proc Natl Acad Sci U S A. 2023;120:e2216799120.
    PubMed     Abstract available


    May 2023
  68. SHIRAKAWA KT, Sala FA, Miyachiro MM, Job V, et al
    Architecture and genomic arrangement of the MurE-MurF bacterial cell wall biosynthesis complex.
    Proc Natl Acad Sci U S A. 2023;120:e2219540120.
    PubMed     Abstract available


  69. GOYCHUK A, Kannan D, Chakraborty AK, Kardar M, et al
    Polymer folding through active processes recreates features of genome organization.
    Proc Natl Acad Sci U S A. 2023;120:e2221726120.
    PubMed     Abstract available


  70. MELBY JA, Brown KA, Gregorich ZR, Roberts DS, et al
    High sensitivity top-down proteomics captures single muscle cell heterogeneity in large proteoforms.
    Proc Natl Acad Sci U S A. 2023;120:e2222081120.
    PubMed     Abstract available


  71. REITZ CJ, Tavassoli M, Kim DH, Shah S, et al
    Proteomics and phosphoproteomics of failing human left ventricle identifies dilated cardiomyopathy-associated phosphorylation of CTNNA3.
    Proc Natl Acad Sci U S A. 2023;120:e2212118120.
    PubMed     Abstract available


  72. SEXTON DL, Hashimi A, Beskrovnaya P, Sibanda L, et al
    The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis.
    Proc Natl Acad Sci U S A. 2023;120:e2303275120.
    PubMed     Abstract available


    April 2023
  73. BARTOLEC TK, Vazquez-Campos X, Norman A, Luong C, et al
    Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein-protein interactions in the human cell.
    Proc Natl Acad Sci U S A. 2023;120:e2219418120.
    PubMed     Abstract available


  74. WANG YJ, Tain T, Yu JY, Li J, et al
    Genomic and structural basis for evolution of tropane alkaloid biosynthesis.
    Proc Natl Acad Sci U S A. 2023;120:e2302448120.
    PubMed     Abstract available


  75. LLEWELLYN J, Mallikarjun V, Appleton E, Osipova M, et al
    Loss of regulation of protein synthesis and turnover underpins an attenuated stress response in senescent human mesenchymal stem cells.
    Proc Natl Acad Sci U S A. 2023;120:e2210745120.
    PubMed     Abstract available


  76. GESESSE CA, Nigir B, de Sousa K, Gianfranceschi L, et al
    Genomics-driven breeding for local adaptation of durum wheat is enhanced by farmers' traditional knowledge.
    Proc Natl Acad Sci U S A. 2023;120:e2205774119.
    PubMed     Abstract available


  77. HUANG K, Jahani M, Gouzy J, Legendre A, et al
    The genomics of linkage drag in inbred lines of sunflower.
    Proc Natl Acad Sci U S A. 2023;120:e2205783119.
    PubMed     Abstract available


  78. SANCHEZ D, Sadoun SB, Mary-Huard T, Allier A, et al
    Improving the use of plant genetic resources to sustain breeding programs' efficiency.
    Proc Natl Acad Sci U S A. 2023;120:e2205780119.
    PubMed     Abstract available


    March 2023
  79. LATRILLE T, Rodrigue N, Lartillot N
    Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale.
    Proc Natl Acad Sci U S A. 2023;120:e2214977120.
    PubMed     Abstract available


    February 2023
  80. SCHMID C, Schiffels S
    Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data.
    Proc Natl Acad Sci U S A. 2023;120:e2218375120.
    PubMed     Abstract available


  81. CHUANG TP, Lai WY, Gabre JL, Lind DE, et al
    ALK fusion NSCLC oncogenes promote survival and inhibit NK cell responses via SERPINB4 expression.
    Proc Natl Acad Sci U S A. 2023;120:e2216479120.
    PubMed     Abstract available


  82. MANOUCHEHRI N, Salinas VH, Hussain RZ, Stuve O, et al
    Distinctive transcriptomic and epigenomic signatures of bone marrow-derived myeloid cells and microglia in CNS autoimmunity.
    Proc Natl Acad Sci U S A. 2023;120:e2212696120.
    PubMed     Abstract available


  83. ZONG W, Rahman T, Zhu L, Zeng X, et al
    Transcriptomic congruence analysis for evaluating model organisms.
    Proc Natl Acad Sci U S A. 2023;120:e2202584120.
    PubMed     Abstract available


  84. WERSEBE MJ, Weider LJ
    Resurrection genomics provides molecular and phenotypic evidence of rapid adaptation to salinization in a keystone aquatic species.
    Proc Natl Acad Sci U S A. 2023;120:e2217276120.
    PubMed     Abstract available


    January 2023
  85. PRESKA STEINBERG A, Silander OK, Kussell E
    Correlated substitutions reveal SARS-like coronaviruses recombine frequently with a diverse set of structured gene pools.
    Proc Natl Acad Sci U S A. 2023;120:e2206945119.
    PubMed     Abstract available


  86. STONEKING M, Arias L, Liu D, Oliveira S, et al
    Genomic perspectives on human dispersals during the Holocene.
    Proc Natl Acad Sci U S A. 2023;120:e2209475119.
    PubMed     Abstract available


  87. LI X, Yue X, Sepulveda H, Burt RA, et al
    OGT controls mammalian cell viability by regulating the proteasome/mTOR/ mitochondrial axis.
    Proc Natl Acad Sci U S A. 2023;120:e2218332120.
    PubMed     Abstract available


  88. FLESKES RE, Cabana GS, Gilmore JK, Juarez C, et al
    Community-engaged ancient DNA project reveals diverse origins of 18th-century African descendants in Charleston, South Carolina.
    Proc Natl Acad Sci U S A. 2023;120:e2201620120.
    PubMed     Abstract available


  89. HE X
    Culture-based approaches to studying "microbial dark matter".
    Proc Natl Acad Sci U S A. 2023;120:e2219691120.
    PubMed    


  90. CASSEMIRO FAS, Albert JS, Antonelli A, Menegotto A, et al
    Landscape dynamics and diversification of the megadiverse South American freshwater fish fauna.
    Proc Natl Acad Sci U S A. 2023;120:e2211974120.
    PubMed     Abstract available


  91. LEA AJ, Garcia A, Arevalo J, Ayroles JF, et al
    Natural selection of immune and metabolic genes associated with health in two lowland Bolivian populations.
    Proc Natl Acad Sci U S A. 2023;120:e2207544120.
    PubMed     Abstract available


    December 2022
  92. TABILAS C, Iu DS, Daly CWP, Yee Mon KJ, et al
    Early microbial exposure shapes adult immunity by altering CD8+ T cell development.
    Proc Natl Acad Sci U S A. 2022;119:e2212548119.
    PubMed     Abstract available


  93. XIE B, Wang J, Nie Y, Tian J, et al
    Type IV pili trigger episymbiotic association of Saccharibacteria with its bacterial host.
    Proc Natl Acad Sci U S A. 2022;119:e2215990119.
    PubMed     Abstract available


    November 2022
  94. ZOLOTAREV N, Bayer M, Grosschedl R
    EBF1 is continuously required for stabilizing local chromatin accessibility in pro-B cells.
    Proc Natl Acad Sci U S A. 2022;119:e2210595119.
    PubMed     Abstract available


  95. BARBIERI C, Blasi DE, Arango-Isaza E, Sotiropoulos AG, et al
    A global analysis of matches and mismatches between human genetic and linguistic histories.
    Proc Natl Acad Sci U S A. 2022;119:e2122084119.
    PubMed     Abstract available


  96. KOLESKE ML, McInnes G, Brown JEH, Thomas N, et al
    Functional genomics of OCTN2 variants informs protein-specific variant effect predictor for Carnitine Transporter Deficiency.
    Proc Natl Acad Sci U S A. 2022;119:e2210247119.
    PubMed     Abstract available


  97. SCHMITZ LL, Duque V
    In utero exposure to the Great Depression is reflected in late-life epigenetic aging signatures.
    Proc Natl Acad Sci U S A. 2022;119:e2208530119.
    PubMed     Abstract available


  98. GIERUS L, Birand A, Bunting MD, Godahewa GI, et al
    Leveraging a natural murine meiotic drive to suppress invasive populations.
    Proc Natl Acad Sci U S A. 2022;119:e2213308119.
    PubMed     Abstract available


  99. ATMORE LM, Martinez-Garcia L, Makowiecki D, Andre C, et al
    Population dynamics of Baltic herring since the Viking Age revealed by ancient DNA and genomics.
    Proc Natl Acad Sci U S A. 2022;119:e2208703119.
    PubMed     Abstract available


  100. JAMALUDDIN MFB, Ghosh A, Ingle A, Mohammed R, et al
    Bovine and human endometrium-derived hydrogels support organoid culture from healthy and cancerous tissues.
    Proc Natl Acad Sci U S A. 2022;119:e2208040119.
    PubMed     Abstract available


    October 2022
  101. FALAHATI H, Wu Y, Feuerer V, Simon HG, et al
    Proximity proteomics of synaptopodin provides insight into the molecular composition of the spine apparatus of dendritic spines.
    Proc Natl Acad Sci U S A. 2022;119:e2203750119.
    PubMed     Abstract available


  102. HIROOKA S, Itabashi T, Ichinose TM, Onuma R, et al
    Life cycle and functional genomics of the unicellular red alga Galdieria for elucidating algal and plant evolution and industrial use.
    Proc Natl Acad Sci U S A. 2022;119:e2210665119.
    PubMed     Abstract available


  103. SCHRAGO CG
    Genomic basis of neotropical primate adaptations.
    Proc Natl Acad Sci U S A. 2022;119:e2213527119.
    PubMed    


  104. BANUELOS MM, Zavaleta YJA, Roldan A, Reyes RJ, et al
    Associations between forensic loci and expression levels of neighboring genes may compromise medical privacy.
    Proc Natl Acad Sci U S A. 2022;119:e2121024119.
    PubMed     Abstract available


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  108. LI HZ, Yang K, Liao H, Lassen SB, et al
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  135. HU Y, Satten GA, Hu YJ
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  215. DELMONT TO
    Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean.
    Proc Natl Acad Sci U S A. 2021;118.
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  216. ESHEL G, Araus V, Undurraga S, Soto DC, et al
    Plant ecological genomics at the limits of life in the Atacama Desert.
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  217. MOLIMAU-SAMASONI S, Woolner VH, Foliga ST, Robichon K, et al
    Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine "matalafi".
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  218. QIAO Q, Edger PP, Xue L, Qiong, et al
    Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.).
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  219. ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
    Reply to Briggs et al.: Genomic integration and expression of SARS-CoV-2 sequences can explain prolonged or recurrent viral RNA detection.
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    October 2021
  220. VIEGAS J
    Profile of Jennifer Marshall Graves.
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  221. GARCIA-SASTRE A
    Genomics serology to inform therapies and vaccines for arthritogenic alphaviruses.
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    September 2021
  222. FEUERBORN TR, Carmagnini A, Losey RJ, Nomokonova T, et al
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  223. SAGAR V, Kaelin CB, Natesh M, Reddy PA, et al
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  224. SIX C, Ratin M, Marie D, Corre E, et al
    Marine Synechococcus picocyanobacteria: Light utilization across latitudes.
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  225. HAGEDORN M, Page CA, O'Neil KL, Flores DM, et al
    Assisted gene flow using cryopreserved sperm in critically endangered coral.
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  226. COPE OL, Keefover-Ring K, Kruger EL, Lindroth RL, et al
    Growth-defense trade-offs shape population genetic composition in an iconic forest tree species.
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  227. NEVES DM, Kerkhoff AJ, Echeverria-Londono S, Merow C, et al
    The adaptive challenge of extreme conditions shapes evolutionary diversity of plant assemblages at continental scales.
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  228. BUTTNER H, Niehs SP, Vandelannoote K, Cseresnyes Z, et al
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  229. YUAN Y, Zhang Y, Zhang P, Liu C, et al
    Comparative genomics provides insights into the aquatic adaptations of mammals.
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  230. CHOI JY, Dai X, Alam O, Peng JZ, et al
    Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands.
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  231. ZHU Z, Fan Y, Kong Y, Lv J, et al
    DeepLINK: Deep learning inference using knockoffs with applications to genomics.
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  232. FLEISCHER V, Gonzalez-Escamilla G, Ciolac D, Albrecht P, et al
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  233. SYNEK L, Pleskot R, Sekeres J, Serrano N, et al
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  234. BRAMANTI B, Wu Y, Yang R, Cui Y, et al
    Assessing the origins of the European Plagues following the Black Death: A synthesis of genomic, historical, and ecological information.
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  235. KARS ME, Basak AN, Onat OE, Bilguvar K, et al
    The genetic structure of the Turkish population reveals high levels of variation and admixture.
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    August 2021
  236. HO CM, Jih J, Lai M, Li X, et al
    Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition.
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  237. NELSON DL, Caskey CT
    Stephen T. Warren: Human geneticist who advanced understanding of mutational mechanisms and developmental disorders.
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  238. BIRZU G, Hallatschek O, Korolev KS
    Genealogical structure changes as range expansions transition from pushed to pulled.
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  239. TOCZYDLOWSKI RH, Liggins L, Gaither MR, Anderson TJ, et al
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  240. TRIPODI P, Rabanus-Wallace MT, Barchi L, Kale S, et al
    Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions.
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  241. ZHANG L, Richards A, Barrasa MI, Hughes SH, et al
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  242. LEE S, Sieradzki ET, Nicolas AM, Walker RL, et al
    Methane-derived carbon flows into host-virus networks at different trophic levels in soil.
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  243. WHEAT A, Yu C, Wang X, Burke AM, et al
    Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry.
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  244. QI Y, Nepal KK, Blodgett JAV
    A comparative metabologenomic approach reveals mechanistic insights into Streptomyces antibiotic crypticity.
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  245. ROBERTS KINGMAN GA, Lee D, Jones FC, Desmet D, et al
    Longer or shorter spines: Reciprocal trait evolution in stickleback via triallelic regulatory changes in Stanniocalcin2a.
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    July 2021
  246. RAVINDRAN S
    Profile of Patrick Cramer.
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  247. DAVESNE D, Friedman M, Schmitt AD, Fernandez V, et al
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  248. MITCHELL KJ
    Ancient DNA from the koala lemur puts Madagascar on the paleogenomic map.
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  249. RODRIGUES JA, Hsieh PH, Ruan D, Nishimura T, et al
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  250. OSVATIC JT, Wilkins LGE, Leibrecht L, Leray M, et al
    Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups.
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  251. LEONARD MM, Valitutti F, Karathia H, Pujolassos M, et al
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  252. VIEGAS J
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  253. ROYCROFT E, MacDonald AJ, Moritz C, Moussalli A, et al
    Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement.
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    June 2021
  254. DEVIESE T, Abrams G, Hajdinjak M, Pirson S, et al
    Reply to Van Peer: Direct radiocarbon dating and ancient genomic analysis reveal the true age of the Neanderthals at Spy Cave.
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  255. MARCINIAK S, Mughal MR, Godfrey LR, Bankoff RJ, et al
    Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant, "subfossil" koala lemur Megaladapis edwardsi.
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  256. BURKE EJ, Rodda SS, Lund SR, Sun Z, et al
    Phage-encoded ten-eleven translocation dioxygenase (TET) is active in C5-cytosine hypermodification in DNA.
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  257. WILSON RM, Tfaily MM, Kolton M, Johnston ER, et al
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  258. KONOPELSKI SNAVELY SE, Susman MW, Kunz RC, Tan J, et al
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  259. LIU Y, Zeng R, Wang R, Weng Y, et al
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  260. DALY KG, Mattiangeli V, Hare AJ, Davoudi H, et al
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  261. BAIRD HP, Shin S, Oberprieler RG, Hulle M, et al
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  262. HUDSON J, Castilla JC, Teske PR, Beheregaray LB, et al
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  263. TISZA MJ, Buck CB
    A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases.
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  264. FRISTOE TS, Chytry M, Dawson W, Essl F, et al
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    May 2021
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  266. DEWITT WS, Harris KD, Ragsdale AP, Harris K, et al
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  267. BOHUTINSKA M, Vlcek J, Yair S, Laenen B, et al
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  268. REBEAUD ME, Mallik S, Goloubinoff P, Tawfik DS, et al
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  270. RICHARDS EJ, McGirr JA, Wang JR, St John ME, et al
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  271. TAKUSAGAWA M, Kobayashi Y, Fukao Y, Hidaka K, et al
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  272. ALMEIDA DD, Viala VL, Nachtigall PG, Broe M, et al
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  273. ANDERSON SAS, Weir JT
    Character displacement drives trait divergence in a continental fauna.
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  274. HUTCHINGS JA, Kuparinen A
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  275. HAHN M, Covarrubias-Pinto A, Herhaus L, Satpathy S, et al
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  276. PARINS-FUKUCHI C, Stull GW, Smith SA
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  281. WALKER AA, Robinson SD, Paluzzi JV, Merritt DJ, et al
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    April 2021
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    Global wind patterns shape genetic differentiation, asymmetric gene flow, and genetic diversity in trees.
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  289. CAPRILES JM, Santoro CM, George RJ, Flores Bedregal E, et al
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  290. PALACIOS-FLORES K, Garcia-Sotelo J, Castillo A, Uribe C, et al
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    March 2021
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  292. LARENA M, Sanchez-Quinto F, Sjodin P, McKenna J, et al
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  293. DEVIESE T, Abrams G, Hajdinjak M, Pirson S, et al
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  294. KAWAKUBO S, Gao F, Li S, Tan Z, et al
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    February 2021
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    January 2021
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    December 2020
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    November 2020
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    Type I interferon remodels lysosome function and modifies intestinal epithelial defense.
    Proc Natl Acad Sci U S A. 2020;117:29862-29871.
    PubMed     Abstract available


  331. CHEN D, Zhang Q, Tang W, Huang Z, et al
    The evolutionary origin and domestication history of goldfish (Carassius auratus).
    Proc Natl Acad Sci U S A. 2020;117:29775-29785.
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  332. CLEVES PA, Tinoco AI, Bradford J, Perrin D, et al
    Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor.
    Proc Natl Acad Sci U S A. 2020;117:28899-28905.
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    Profile of Masayori Inouye.
    Proc Natl Acad Sci U S A. 2020;117:28543-28545.
    PubMed    


  334. LEE J, Ha S, Kim M, Kim SW, et al
    Spatial and temporal diversity of glycome expression in mammalian brain.
    Proc Natl Acad Sci U S A. 2020;117:28743-28753.
    PubMed     Abstract available


  335. KIM J, Rosenberg NA, Palacios JA
    Distance metrics for ranked evolutionary trees.
    Proc Natl Acad Sci U S A. 2020;117:28876-28886.
    PubMed     Abstract available


  336. EPSTEIN JH, Anthony SJ, Islam A, Kilpatrick AM, et al
    Nipah virus dynamics in bats and implications for spillover to humans.
    Proc Natl Acad Sci U S A. 2020;117:29190-29201.
    PubMed     Abstract available


  337. KOZLENKOV A, Vermunt MW, Apontes P, Li J, et al
    Evolution of regulatory signatures in primate cortical neurons at cell-type resolution.
    Proc Natl Acad Sci U S A. 2020;117:28422-28432.
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  338. ROMERO IC, Kong S, Fowlkes CC, Jaramillo C, et al
    Improving the taxonomy of fossil pollen using convolutional neural networks and superresolution microscopy.
    Proc Natl Acad Sci U S A. 2020;117:28496-28505.
    PubMed     Abstract available


  339. STOCKLEY P, Franco C, Claydon AJ, Davidson A, et al
    Revealing mechanisms of mating plug function under sexual selection.
    Proc Natl Acad Sci U S A. 2020;117:27465-27473.
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  340. CAO K, Ugarenko M, Ozark PA, Wang J, et al
    DOT1L-controlled cell-fate determination and transcription elongation are independent of H3K79 methylation.
    Proc Natl Acad Sci U S A. 2020;117:27365-27373.
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  341. SHIBL AA, Isaac A, Ochsenkuhn MA, Cardenas A, et al
    Diatom modulation of select bacteria through use of two unique secondary metabolites.
    Proc Natl Acad Sci U S A. 2020;117:27445-27455.
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  342. SHENG X, Qiu C, Liu H, Gluck C, et al
    Systematic integrated analysis of genetic and epigenetic variation in diabetic kidney disease.
    Proc Natl Acad Sci U S A. 2020 Nov 3. pii: 2005905117.
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    October 2020
  343. OIKONOMOU P, Salatino R, Tavazoie S
    In vivo mRNA display enables large-scale proteomics by next generation sequencing.
    Proc Natl Acad Sci U S A. 2020;117:26710-26718.
    PubMed     Abstract available


  344. BUHLMANN P
    Toward causality and improving external validity.
    Proc Natl Acad Sci U S A. 2020;117:25963-25965.
    PubMed    


  345. CARRILLO JD, Faurby S, Silvestro D, Zizka A, et al
    Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange.
    Proc Natl Acad Sci U S A. 2020;117:26281-26287.
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  346. CHEN J, Lu L, Robb SMC, Collin M, et al
    Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.
    Proc Natl Acad Sci U S A. 2020;117:26288-26297.
    PubMed     Abstract available


  347. HAN J, Wang S, Yeung K, Yang D, et al
    Proteome-wide effects of naphthalene-derived secondary organic aerosol in BEAS-2B cells are caused by short-lived unsaturated carbonyls.
    Proc Natl Acad Sci U S A. 2020;117:25386-25395.
    PubMed     Abstract available


  348. HEINDEL DW, Koppolu S, Zhang Y, Kasper B, et al
    Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity.
    Proc Natl Acad Sci U S A. 2020 Oct 12. pii: 2008203117.
    PubMed     Abstract available


  349. RENNER SS
    Bitter gourd from Africa expanded to Southeast Asia and was domesticated there: A new insight from parallel studies.
    Proc Natl Acad Sci U S A. 2020;117:24630-24631.
    PubMed    


  350. MATSUMURA H, Hsiao MC, Lin YP, Toyoda A, et al
    Reply to Renner: Meticulous investigation, not sequencing effort, leads to robust conclusion.
    Proc Natl Acad Sci U S A. 2020;117:24632-24633.
    PubMed    


  351. ANDERSON KM, Collins MA, Kong R, Fang K, et al
    Convergent molecular, cellular, and cortical neuroimaging signatures of major depressive disorder.
    Proc Natl Acad Sci U S A. 2020;117:25138-25149.
    PubMed     Abstract available


  352. NGO D, Wen D, Gao Y, Keyes MJ, et al
    Circulating testican-2 is a podocyte-derived marker of kidney health.
    Proc Natl Acad Sci U S A. 2020;117:25026-25035.
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  353. MCWILLIAM HEG, Mak JYW, Awad W, Zorkau M, et al
    Endoplasmic reticulum chaperones stabilize ligand-receptive MR1 molecules for efficient presentation of metabolite antigens.
    Proc Natl Acad Sci U S A. 2020;117:24974-24985.
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  354. TUCHOLSKI T, Cai W, Gregorich ZR, Bayne EF, et al
    Distinct hypertrophic cardiomyopathy genotypes result in convergent sarcomeric proteoform profiles revealed by top-down proteomics.
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    September 2020
  355. ARISTIZABAL MJ, Anreiter I, Halldorsdottir T, Odgers CL, et al
    Biological embedding of experience: A primer on epigenetics.
    Proc Natl Acad Sci U S A. 2020;117:23261-23269.
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  356. MCEWEN LM, O'Donnell KJ, McGill MG, Edgar RD, et al
    The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells.
    Proc Natl Acad Sci U S A. 2020;117:23329-23335.
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    Ecological divergence and hybridization of Neotropical Leishmania parasites.
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  358. HECKMANN D, Campeau A, Lloyd CJ, Phaneuf PV, et al
    Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers.
    Proc Natl Acad Sci U S A. 2020;117:23182-23190.
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    Plant expression of NifD protein variants resistant to mitochondrial degradation.
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    Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media.
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    Multiomic blood correlates of genetic risk identify presymptomatic disease alterations.
    Proc Natl Acad Sci U S A. 2020;117:21813-21820.
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    Enhancer dependence of cell-type-specific gene expression increases with developmental age.
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    August 2020
  363. BUFFALO V, Coop G
    Estimating the genome-wide contribution of selection to temporal allele frequency change.
    Proc Natl Acad Sci U S A. 2020;117:20672-20680.
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  364. KWESI-MALIEPAARD EM, Aslam MA, Alemdehy MF, van den Brand T, et al
    The histone methyltransferase DOT1L prevents antigen-independent differentiation and safeguards epigenetic identity of CD8(+) T cells.
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    Identifying collagen VI as a target of fibrotic diseases regulated by CREBBP/EP300.
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    The whale shark genome reveals how genomic and physiological properties scale with body size.
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    Next-generation gene drive for population modification of the malaria vector mosquito, Anopheles gambiae.
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    Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides.
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    Changes in life history and population size can explain the relative neutral diversity levels on X and autosomes in extant human populations.
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    Genomic analysis of inherited hearing loss in the Palestinian population.
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    Global epigenomic analysis of KSHV-infected primary effusion lymphoma identifies functional MYC superenhancers and enhancer RNAs.
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    A membrane-depolarizing toxin substrate of the Staphylococcus aureus type VII secretion system mediates intraspecies competition.
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    June 2020
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    Superresolution imaging reveals spatiotemporal propagation of human replication foci mediated by CTCF-organized chromatin structures.
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