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2049 Chinese

The 20K Word Road to Mandarin Proficiency

By B. S. Kamps et al.


  Genetics

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Articles published in PLoS Genet

Retrieve available abstracts of 175 articles:
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Single Articles


    April 2024
  1. CHO A, Lax G, Livingston SJ, Masukagami Y, et al
    Genomic analyses of Symbiomonas scintillans show no evidence for endosymbiotic bacteria but does reveal the presence of giant viruses.
    PLoS Genet. 2024;20:e1011218.
    PubMed     Abstract available


  2. DUMONT BL, Gatti DM, Ballinger MA, Lin D, et al
    Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models.
    PLoS Genet. 2024;20:e1011228.
    PubMed     Abstract available


  3. GUNN S, Lunetta KL
    Correlation-based tests for the formal comparison of polygenic scores in multiple populations.
    PLoS Genet. 2024;20:e1011249.
    PubMed     Abstract available


  4. MOORE MP, Laager M, Ribeca P, Didelot X, et al
    KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes.
    PLoS Genet. 2024;20:e1011184.
    PubMed     Abstract available


    March 2024
  5. WARD CM, Onetto CA, Van Den Heuvel S, Cuijvers KM, et al
    Recombination, admixture and genome instability shape the genomic landscape of Saccharomyces cerevisiae derived from spontaneous grape ferments.
    PLoS Genet. 2024;20:e1011223.
    PubMed     Abstract available


  6. LUO Z, McTaggart A, Schwessinger B
    Genome biology and evolution of mating-type loci in four cereal rust fungi.
    PLoS Genet. 2024;20:e1011207.
    PubMed     Abstract available


    February 2024
  7. RIVAS-GONZALEZ I, Schierup MH, Wakeley J, Hobolth A, et al
    TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting.
    PLoS Genet. 2024;20:e1010836.
    PubMed     Abstract available


  8. RAY DD, Flagel L, Schrider DR
    IntroUNET: Identifying introgressed alleles via semantic segmentation.
    PLoS Genet. 2024;20:e1010657.
    PubMed     Abstract available


    January 2024
  9. ZHANG QX, Liu T, Guo X, Zhen J, et al
    Searching across-cohort relatives in 54,092 GWAS samples via encrypted genotype regression.
    PLoS Genet. 2024;20:e1011037.
    PubMed     Abstract available


  10. LEWANSKI AL, Grundler MC, Bradburd GS
    The era of the ARG: An introduction to ancestral recombination graphs and their significance in empirical evolutionary genomics.
    PLoS Genet. 2024;20:e1011110.
    PubMed     Abstract available


    December 2023
  11. NOVAK LVF, Treitli SC, Pyrih J, Halakuc P, et al
    Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria.
    PLoS Genet. 2023;19:e1011050.
    PubMed     Abstract available


  12. KAWAI Y, Watanabe Y, Omae Y, Miyahara R, et al
    Exploring the genetic diversity of the Japanese population: Insights from a large-scale whole genome sequencing analysis.
    PLoS Genet. 2023;19:e1010625.
    PubMed     Abstract available


  13. LEGRAND C, Andriantsoa R, Lichter P, Raddatz G, et al
    Time-resolved, integrated analysis of clonally evolving genomes.
    PLoS Genet. 2023;19:e1011085.
    PubMed     Abstract available


  14. WANG D, Perera D, He J, Cao C, et al
    cLD: Rare-variant linkage disequilibrium between genomic regions identifies novel genomic interactions.
    PLoS Genet. 2023;19:e1011074.
    PubMed     Abstract available


  15. MUNASINGHE M, Read A, Stitzer MC, Song B, et al
    Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion.
    PLoS Genet. 2023;19:e1011086.
    PubMed     Abstract available


    November 2023
  16. MO Z, Siepel A
    Domain-adaptive neural networks improve supervised machine learning based on simulated population genetic data.
    PLoS Genet. 2023;19:e1011032.
    PubMed     Abstract available


  17. MAROM R, Zhang B, Washington ME, Song IW, et al
    Dominant negative variants in KIF5B cause osteogenesis imperfecta via down regulation of mTOR signaling.
    PLoS Genet. 2023;19:e1011005.
    PubMed     Abstract available


  18. AYALA NM, Genetti M, Corbett-Detig R
    Inferring multi-locus selection in admixed populations.
    PLoS Genet. 2023;19:e1011062.
    PubMed     Abstract available


  19. GOUDET J, Weir BS
    An allele-sharing, moment-based estimator of global, population-specific and population-pair FST under a general model of population structure.
    PLoS Genet. 2023;19:e1010871.
    PubMed     Abstract available


  20. MICHEL JC, Grivette MMB, Harshfield AT, Huynh L, et al
    Electrical synapse structure requires distinct isoforms of a postsynaptic scaffold.
    PLoS Genet. 2023;19:e1011045.
    PubMed     Abstract available


    October 2023
  21. MOCCI E, Ward K, Perry JA, Starkweather A, et al
    Genome wide association joint analysis reveals 99 risk loci for pain susceptibility and pleiotropic relationships with psychiatric, metabolic, and immunological traits.
    PLoS Genet. 2023;19:e1010977.
    PubMed     Abstract available


  22. RADULESCU E, Chen Q, Pergola G, Di Carlo P, et al
    Investigating trait variability of gene co-expression network architecture in brain by controlling for genomic risk of schizophrenia.
    PLoS Genet. 2023;19:e1010989.
    PubMed     Abstract available


  23. AUBIN E, Llauro C, Garrigue J, Mirouze M, et al
    Genome-wide analysis of horizontal transfer in non-model wild species from a natural ecosystem reveals new insights into genetic exchange in plants.
    PLoS Genet. 2023;19:e1010964.
    PubMed     Abstract available


  24. CAURET CMS, Jordan DC, Kukoly LM, Burton SR, et al
    Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog Xenopus laevis.
    PLoS Genet. 2023;19:e1010990.
    PubMed     Abstract available


  25. WULFRIDGE P, Davidovich A, Salvador AC, Manno GC, et al
    Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation.
    PLoS Genet. 2023;19:e1010997.
    PubMed     Abstract available


    September 2023
  26. WEN X, Feng K, Qin J, Wei P, et al
    A detoxification pathway initiated by a nuclear receptor TcHR96h in Tetranychus cinnabarinus (Boisduval).
    PLoS Genet. 2023;19:e1010911.
    PubMed     Abstract available


  27. ROCA-UMBERT A, Garcia-Calleja J, Vogel-Gonzalez M, Fierro-Villegas A, et al
    Human genetic adaptation related to cellular zinc homeostasis.
    PLoS Genet. 2023;19:e1010950.
    PubMed     Abstract available


    August 2023
  28. TETERINA AA, Willis JH, Lukac M, Jovelin R, et al
    Genomic diversity landscapes in outcrossing and selfing Caenorhabditis nematodes.
    PLoS Genet. 2023;19:e1010879.
    PubMed     Abstract available


    July 2023
  29. WAGNER ER, Nightingale NM, Jen A, Overmyer KA, et al
    PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae.
    PLoS Genet. 2023;19:e1010593.
    PubMed     Abstract available


    June 2023
  30. NAKANO S, Kashio S, Nishimura K, Takeishi A, et al
    Damage sensing mediated by serine proteases Hayan and Persephone for Toll pathway activation in apoptosis-deficient flies.
    PLoS Genet. 2023;19:e1010761.
    PubMed     Abstract available


  31. BRISEVAC D, Prakash C, Kaiser TS
    Genetic analysis of a phenotypic loss in the mechanosensory entrainment of a circalunar clock.
    PLoS Genet. 2023;19:e1010763.
    PubMed     Abstract available


  32. SUN B, Kim H, Mello CC, Priess JR, et al
    The CERV protein of Cer1, a C. elegans LTR retrotransposon, is required for nuclear export of viral genomic RNA and can form giant nuclear rods.
    PLoS Genet. 2023;19:e1010804.
    PubMed     Abstract available


  33. VEDANAYAGAM J, Lin CJ, Papareddy R, Nodine M, et al
    Regulatory logic of endogenous RNAi in silencing de novo genomic conflicts.
    PLoS Genet. 2023;19:e1010787.
    PubMed     Abstract available


  34. MIAO Y, Zhao Y, Wan S, Mei Q, et al
    Integrated analysis of genome-wide association studies and 3D epigenomic characteristics reveal the BMP2 gene regulating loin muscle depth in Yorkshire pigs.
    PLoS Genet. 2023;19:e1010820.
    PubMed     Abstract available


  35. WANG N, Cao S, Liu Z, Xiao H, et al
    Genomic conservation of crop wild relatives: A case study of citrus.
    PLoS Genet. 2023;19:e1010811.
    PubMed     Abstract available


    May 2023
  36. PISUPATI R, Nizhynska V, Molla Morales A, Nordborg M, et al
    On the causes of gene-body methylation variation in Arabidopsis thaliana.
    PLoS Genet. 2023;19:e1010728.
    PubMed     Abstract available


  37. JIANG MZ, Aguet F, Ardlie K, Chen J, et al
    Canonical correlation analysis for multi-omics: Application to cross-cohort analysis.
    PLoS Genet. 2023;19:e1010517.
    PubMed     Abstract available


    April 2023
  38. KOPPES EA, Johnson MA, Moresco JJ, Luppi P, et al
    Insulin secretion deficits in a Prader-Willi syndrome beta-cell model are associated with a concerted downregulation of multiple endoplasmic reticulum chaperones.
    PLoS Genet. 2023;19:e1010710.
    PubMed     Abstract available


  39. BRUAL T, Effantin G, Baltenneck J, Attaiech L, et al
    A natural single nucleotide mutation in the small regulatory RNA ArcZ of Dickeya solani switches off the antimicrobial activities against yeast and bacteria.
    PLoS Genet. 2023;19:e1010725.
    PubMed     Abstract available


    March 2023
  40. SLABODNICK MM, Tintori SC, Prakash M, Zhang P, et al
    Zyxin contributes to coupling between cell junctions and contractile actomyosin networks during apical constriction.
    PLoS Genet. 2023;19:e1010319.
    PubMed     Abstract available


  41. ONETTO CA, Kutyna DR, Kolouchova R, McCarthy J, et al
    SO2 and copper tolerance exhibit an evolutionary trade-off in Saccharomyces cerevisiae.
    PLoS Genet. 2023;19:e1010692.
    PubMed     Abstract available


  42. KRISHNAN S, DeMaere MZ, Beck D, Ostrowski M, et al
    Rhometa: Population recombination rate estimation from metagenomic read datasets.
    PLoS Genet. 2023;19:e1010683.
    PubMed     Abstract available


    February 2023
  43. XU L, Wang X, Lu X, Liang F, et al
    Long-read sequencing identifies novel structural variations in colorectal cancer.
    PLoS Genet. 2023;19:e1010514.
    PubMed     Abstract available


  44. CHOI SW, Garcia-Gonzalez J, Ruan Y, Wu HM, et al
    PRSet: Pathway-based polygenic risk score analyses and software.
    PLoS Genet. 2023;19:e1010624.
    PubMed     Abstract available


  45. NIELSEN SV, Vaughn AH, Leppala K, Landis MJ, et al
    Bayesian inference of admixture graphs on Native American and Arctic populations.
    PLoS Genet. 2023;19:e1010410.
    PubMed     Abstract available


    January 2023
  46. WU MY, Forcina G, Low GW, Sadanandan KR, et al
    Historic samples reveal loss of wild genotype through domestic chicken introgression during the Anthropocene.
    PLoS Genet. 2023;19:e1010551.
    PubMed     Abstract available


  47. WATTACHERIL JJ, Raj S, Knowles DA, Greally JM, et al
    Using epigenomics to understand cellular responses to environmental influences in diseases.
    PLoS Genet. 2023;19:e1010567.
    PubMed     Abstract available


  48. MARY-HUARD T, Balding D
    Fast and accurate joint inference of coancestry parameters for populations and/or individuals.
    PLoS Genet. 2023;19:e1010054.
    PubMed     Abstract available


    December 2022
  49. LUO X, Zhou H, Cao D, Yan F, et al
    Domestication and selection footprints in Persian walnuts (Juglans regia).
    PLoS Genet. 2022;18:e1010513.
    PubMed     Abstract available


  50. MARIE-ORLEACH L, Brochmann C, Glemin S
    Mating system and speciation I: Accumulation of genetic incompatibilities in allopatry.
    PLoS Genet. 2022;18:e1010353.
    PubMed     Abstract available


    November 2022
  51. GAUR D, Kumar N, Ghosh A, Singh P, et al
    Ydj1 interaction at nucleotide-binding-domain of yeast Ssa1 impacts Hsp90 collaboration and client maturation.
    PLoS Genet. 2022;18:e1010442.
    PubMed     Abstract available


  52. ABRAHAM A, LaBella AL, Capra JA, Rokas A, et al
    Mosaic patterns of selection in genomic regions associated with diverse human traits.
    PLoS Genet. 2022;18:e1010494.
    PubMed     Abstract available


  53. WIBOWO AT, Antunez-Sanchez J, Dawson A, Price J, et al
    Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor.
    PLoS Genet. 2022;18:e1010479.
    PubMed     Abstract available


    October 2022
  54. PORTER AF, Sherry N, Andersson P, Johnson SA, et al
    New rules for genomics-informed COVID-19 responses-Lessons learned from the first waves of the Omicron variant in Australia.
    PLoS Genet. 2022;18:e1010415.
    PubMed    


  55. FINN EH, Misteli T
    Nuclear position modulates long-range chromatin interactions.
    PLoS Genet. 2022;18:e1010451.
    PubMed     Abstract available


  56. REHN J, Mayoh C, Heatley SL, McClure BJ, et al
    RaScALL: Rapid (Ra) screening (Sc) of RNA-seq data for prognostically significant genomic alterations in acute lymphoblastic leukaemia (ALL).
    PLoS Genet. 2022;18:e1010300.
    PubMed     Abstract available


  57. XIA X, Zhang Y, Sun R, Wei Y, et al
    A Prism Vote method for individualized risk prediction of traits in genotype data of Multi-population.
    PLoS Genet. 2022;18:e1010443.
    PubMed     Abstract available


    September 2022
  58. PARANJPE MD, Chaffin M, Zahid S, Ritchie S, et al
    Neurocognitive trajectory and proteomic signature of inherited risk for Alzheimer's disease.
    PLoS Genet. 2022;18:e1010294.
    PubMed     Abstract available


  59. SACHDEVA H
    Reproductive isolation via polygenic local adaptation in sub-divided populations: Effect of linkage disequilibria and drift.
    PLoS Genet. 2022;18:e1010297.
    PubMed     Abstract available


  60. BOCHER O, Ludwig TE, Oglobinsky MS, Marenne G, et al
    Testing for association with rare variants in the coding and non-coding genome: RAVA-FIRST, a new approach based on CADD deleteriousness score.
    PLoS Genet. 2022;18:e1009923.
    PubMed     Abstract available


    August 2022
  61. GILLESPIE NA, Gentry AE, Kirkpatrick RM, Reynolds CA, et al
    Determining the stability of genome-wide factors in BMI between ages 40 to 69 years.
    PLoS Genet. 2022;18:e1010303.
    PubMed     Abstract available


    July 2022
  62. XU S, Li G, Ye X, Chen D, et al
    HAP40 is a conserved central regulator of Huntingtin and a potential modulator of Huntington's disease pathogenesis.
    PLoS Genet. 2022;18:e1010302.
    PubMed     Abstract available


  63. LIANG M, Shishkin M, Mikhailova A, Shchur V, et al
    Estimating the timing of multiple admixture events using 3-locus linkage disequilibrium.
    PLoS Genet. 2022;18:e1010281.
    PubMed     Abstract available


    June 2022
  64. SANCHEZ VC, Yang HH, Craig-Lucas A, Dubois W, et al
    Host CLIC4 expression in the tumor microenvironment is essential for breast cancer metastatic competence.
    PLoS Genet. 2022;18:e1010271.
    PubMed     Abstract available


  65. ANDERSON H, Davison S, Lytle KM, Honkanen L, et al
    Genetic epidemiology of blood type, disease and trait variants, and genome-wide genetic diversity in over 11,000 domestic cats.
    PLoS Genet. 2022;18:e1009804.
    PubMed     Abstract available


  66. BORDENSTEIN SR, Bordenstein SR
    Widespread phages of endosymbionts: Phage WO genomics and the proposed taxonomic classification of Symbioviridae.
    PLoS Genet. 2022;18:e1010227.
    PubMed     Abstract available


  67. TOURNEBIZE R, Chu G, Moorjani P
    Reconstructing the history of founder events using genome-wide patterns of allele sharing across individuals.
    PLoS Genet. 2022;18:e1010243.
    PubMed     Abstract available


  68. BARNADA SM, Isopi A, Tejada-Martinez D, Goubert C, et al
    Genomic features underlie the co-option of SVA transposons as cis-regulatory elements in human pluripotent stem cells.
    PLoS Genet. 2022;18:e1010225.
    PubMed     Abstract available


    May 2022
  69. SMITH TE, Li Y, Perreau J, Moran NA, et al
    Elucidation of host and symbiont contributions to peptidoglycan metabolism based on comparative genomics of eight aphid subfamilies and their Buchnera.
    PLoS Genet. 2022;18:e1010195.
    PubMed     Abstract available


  70. GIBSON G
    Perspectives on rigor and reproducibility in single cell genomics.
    PLoS Genet. 2022;18:e1010210.
    PubMed    


    April 2022
  71. OZIRMAK LERMI N, Gray SB, Bowen CM, Reyes-Uribe L, et al
    Comparative molecular genomic analyses of a spontaneous rhesus macaque model of mismatch repair-deficient colorectal cancer.
    PLoS Genet. 2022;18:e1010163.
    PubMed     Abstract available


  72. ONETTO CA, Sosnowski MR, Van Den Heuvel S, Borneman AR, et al
    Population genomics of the grapevine pathogen Eutypa lata reveals evidence for population expansion and intraspecific differences in secondary metabolite gene clusters.
    PLoS Genet. 2022;18:e1010153.
    PubMed     Abstract available


  73. DESBOIS M, Opperman KJ, Amezquita J, Gaglio G, et al
    Ubiquitin ligase activity inhibits Cdk5 to control axon termination.
    PLoS Genet. 2022;18:e1010152.
    PubMed     Abstract available


  74. DEGIORGIO M, Szpiech ZA
    A spatially aware likelihood test to detect sweeps from haplotype distributions.
    PLoS Genet. 2022;18:e1010134.
    PubMed     Abstract available


  75. BARRIOS N, Gonzalez-Lagos C, Dreger DL, Parker HG, et al
    Patagonian sheepdog: Genomic analyses trace the footprints of extinct UK herding dogs to South America.
    PLoS Genet. 2022;18:e1010160.
    PubMed     Abstract available


  76. WANG C, Chen L, Chen Y, Jia W, et al
    Abnormal global alternative RNA splicing in COVID-19 patients.
    PLoS Genet. 2022;18:e1010137.
    PubMed     Abstract available


    March 2022
  77. CILLINGOVA A, Toth R, Mojakova A, Zeman I, et al
    Transcriptome and proteome profiling reveals complex adaptations of Candida parapsilosis cells assimilating hydroxyaromatic carbon sources.
    PLoS Genet. 2022;18:e1009815.
    PubMed     Abstract available


  78. SATI S, Jones P, Kim HS, Zhou LA, et al
    HiCuT: An efficient and low input method to identify protein-directed chromatin interactions.
    PLoS Genet. 2022;18:e1010121.
    PubMed     Abstract available


  79. KALMAR L, Gupta S, Kean IRL, Ba X, et al
    HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities.
    PLoS Genet. 2022;18:e1009776.
    PubMed     Abstract available


  80. YANG N, Srivastav SP, Rahman R, Ma Q, et al
    Transposable element landscapes in aging Drosophila.
    PLoS Genet. 2022;18:e1010024.
    PubMed     Abstract available


    February 2022
  81. CHANGMAI P, Jaisamut K, Kampuansai J, Kutanan W, et al
    Indian genetic heritage in Southeast Asian populations.
    PLoS Genet. 2022;18:e1010036.
    PubMed     Abstract available


  82. CAVEDON M, vonHoldt B, Hebblewhite M, Hegel T, et al
    Genomic legacy of migration in endangered caribou.
    PLoS Genet. 2022;18:e1009974.
    PubMed     Abstract available


  83. HERNANDEZ-CASTRO LE, Villacis AG, Jacobs A, Cheaib B, et al
    Population genomics and geographic dispersal in Chagas disease vectors: Landscape drivers and evidence of possible adaptation to the domestic setting.
    PLoS Genet. 2022;18:e1010019.
    PubMed     Abstract available


  84. JOHRI P, Stephan W, Jensen JD
    Soft selective sweeps: Addressing new definitions, evaluating competing models, and interpreting empirical outliers.
    PLoS Genet. 2022;18:e1010022.
    PubMed     Abstract available


  85. CUEVAS A, Eroukhmanoff F, Ravinet M, Saetre GP, et al
    Predictors of genomic differentiation within a hybrid taxon.
    PLoS Genet. 2022;18:e1010027.
    PubMed     Abstract available


    January 2022
  86. HOLLOMON JM, Liu Z, Rusin SF, Jenkins NP, et al
    The Candida albicans Cdk8-dependent phosphoproteome reveals repression of hyphal growth through a Flo8-dependent pathway.
    PLoS Genet. 2022;18:e1009622.
    PubMed     Abstract available


  87. ALTINOGLU I, Abriat G, Carreaux A, Torres-Sanchez L, et al
    Analysis of HubP-dependent cell pole protein targeting in Vibrio cholerae uncovers novel motility regulators.
    PLoS Genet. 2022;18:e1009991.
    PubMed     Abstract available


  88. HAN J, Munro JE, Kocoski A, Barry AE, et al
    Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species.
    PLoS Genet. 2022;18:e1009604.
    PubMed     Abstract available


  89. TORRES-CAMPANA D, Horard B, Denaud S, Benoit G, et al
    Three classes of epigenomic regulators converge to hyperactivate the essential maternal gene deadhead within a heterochromatin mini-domain.
    PLoS Genet. 2022;18:e1009615.
    PubMed     Abstract available


    December 2021
  90. BROWN TS, Arogbokun O, Buckee CO, Chang HH, et al
    Distinguishing gene flow between malaria parasite populations.
    PLoS Genet. 2021;17:e1009335.
    PubMed     Abstract available


  91. POOK T, Nemri A, Gonzalez Segovia EG, Valle Torres D, et al
    Increasing calling accuracy, coverage, and read-depth in sequence data by the use of haplotype blocks.
    PLoS Genet. 2021;17:e1009944.
    PubMed     Abstract available


    October 2021
  92. PERRIN HJ, Currin KW, Vadlamudi S, Pandey GK, et al
    Chromatin accessibility and gene expression during adipocyte differentiation identify context-dependent effects at cardiometabolic GWAS loci.
    PLoS Genet. 2021;17:e1009865.
    PubMed     Abstract available


  93. HILL V, Akarsu H, Barbarroja RS, Cippa VL, et al
    Minimalistic mycoplasmas harbor different functional toxin-antitoxin systems.
    PLoS Genet. 2021;17:e1009365.
    PubMed     Abstract available


  94. LEEB T
    Domestic animal genetics.
    PLoS Genet. 2021;17:e1009831.
    PubMed    


  95. ARNING N, Sheppard SK, Bayliss S, Clifton DA, et al
    Machine learning to predict the source of campylobacteriosis using whole genome data.
    PLoS Genet. 2021;17:e1009436.
    PubMed     Abstract available


  96. STITZER MC, Anderson SN, Springer NM, Ross-Ibarra J, et al
    The genomic ecosystem of transposable elements in maize.
    PLoS Genet. 2021;17:e1009768.
    PubMed     Abstract available


  97. GIRI A, Khaipho-Burch M, Buckler ES, Ramstein GP, et al
    Haplotype associated RNA expression (HARE) improves prediction of complex traits in maize.
    PLoS Genet. 2021;17:e1009568.
    PubMed     Abstract available


    September 2021
  98. BRAULT V, Nguyen TL, Flores-Gutierrez J, Iacono G, et al
    Dyrk1a gene dosage in glutamatergic neurons has key effects in cognitive deficits observed in mouse models of MRD7 and Down syndrome.
    PLoS Genet. 2021;17:e1009777.
    PubMed     Abstract available


  99. BOWDEN J, Pilling LC, Turkmen D, Kuo CL, et al
    The Triangulation WIthin a STudy (TWIST) framework for causal inference within pharmacogenetic research.
    PLoS Genet. 2021;17:e1009783.
    PubMed     Abstract available


  100. CLAERHOUT S, Verstraete P, Warnez L, Vanpaemel S, et al
    CSYseq: The first Y-chromosome sequencing tool typing a large number of Y-SNPs and Y-STRs to unravel worldwide human population genetics.
    PLoS Genet. 2021;17:e1009758.
    PubMed     Abstract available


    August 2021
  101. DURAND R, Deschenes F, Burrus V
    Genomic islands targeting dusA in Vibrio species are distantly related to Salmonella Genomic Island 1 and mobilizable by IncC conjugative plasmids.
    PLoS Genet. 2021;17:e1009669.
    PubMed     Abstract available


  102. NITA A, Matsumoto A, Tang R, Shiraishi C, et al
    A ubiquitin-like protein encoded by the "noncoding" RNA TINCR promotes keratinocyte proliferation and wound healing.
    PLoS Genet. 2021;17:e1009686.
    PubMed     Abstract available


  103. ELLIS DA, Reyes-Martin F, Rodriguez-Lopez M, Cotobal C, et al
    R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements.
    PLoS Genet. 2021;17:e1009784.
    PubMed     Abstract available


  104. SCHOTANUS K, Yadav V, Heitman J
    Epigenetic dynamics of centromeres and neocentromeres in Cryptococcus deuterogattii.
    PLoS Genet. 2021;17:e1009743.
    PubMed     Abstract available


  105. VAN DAM MH, Cabras AA, Henderson JB, Rominger AJ, et al
    The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution.
    PLoS Genet. 2021;17:e1009745.
    PubMed     Abstract available


  106. FELDMANN MJ, Piepho HP, Bridges WC, Knapp SJ, et al
    Average semivariance yields accurate estimates of the fraction of marker-associated genetic variance and heritability in complex trait analyses.
    PLoS Genet. 2021;17:e1009762.
    PubMed     Abstract available


  107. DEMETCI P, Cheng W, Darnell G, Zhou X, et al
    Multi-scale inference of genetic trait architecture using biologically annotated neural networks.
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    July 2021
  108. MACK KL, Jaggard JB, Persons JL, Roback EY, et al
    Repeated evolution of circadian clock dysregulation in cavefish populations.
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  109. AUDAIN E, Wilsdon A, Breckpot J, Izarzugaza JMG, et al
    Integrative analysis of genomic variants reveals new associations of candidate haploinsufficient genes with congenital heart disease.
    PLoS Genet. 2021;17:e1009679.
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  110. WILLEMIN A, Lopez-Delisle L, Bolt CC, Gadolini ML, et al
    Induction of a chromatin boundary in vivo upon insertion of a TAD border.
    PLoS Genet. 2021;17:e1009691.
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  111. ROWAN TN, Durbin HJ, Seabury CM, Schnabel RD, et al
    Powerful detection of polygenic selection and evidence of environmental adaptation in US beef cattle.
    PLoS Genet. 2021;17:e1009652.
    PubMed     Abstract available


  112. FRANCOIS O, Gain C
    A spectral theory for Wright's inbreeding coefficients and related quantities.
    PLoS Genet. 2021;17:e1009665.
    PubMed     Abstract available


  113. CHEN PB, Flint J
    What connectomics can learn from genomics.
    PLoS Genet. 2021;17:e1009692.
    PubMed    


  114. WEIN T, Wang Y, Barz M, Stucker FT, et al
    Essential gene acquisition destabilizes plasmid inheritance.
    PLoS Genet. 2021;17:e1009656.
    PubMed     Abstract available


  115. XIA S, VanKuren NW, Chen C, Zhang L, et al
    Genomic analyses of new genes and their phenotypic effects reveal rapid evolution of essential functions in Drosophila development.
    PLoS Genet. 2021;17:e1009654.
    PubMed     Abstract available


    June 2021
  116. ZHU L, Fukunaga R
    RNA-binding protein Maca is crucial for gigantic male fertility factor gene expression, spermatogenesis, and male fertility, in Drosophila.
    PLoS Genet. 2021;17:e1009655.
    PubMed     Abstract available


  117. RESCAN M, Grulois D, Aboud EO, de Villemereuil P, et al
    Predicting population genetic change in an autocorrelated random environment: Insights from a large automated experiment.
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    PubMed     Abstract available


  118. FUCHS S, Kucklick M, Lehmann E, Beckmann A, et al
    Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach.
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  119. ZHENG NS, Stone CA, Jiang L, Shaffer CM, et al
    High-throughput framework for genetic analyses of adverse drug reactions using electronic health records.
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    May 2021
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    Copy number signature analysis tool and its application in prostate cancer reveals distinct mutational processes and clinical outcomes.
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  121. WHITING JR, Paris JR, van der Zee MJ, Parsons PJ, et al
    Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies.
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    PubMed     Abstract available


  122. BOYS IN, Mar KB, Schoggins JW
    Functional-genomic analysis reveals intraspecies diversification of antiviral receptor transporter proteins in Xenopus laevis.
    PLoS Genet. 2021;17:e1009578.
    PubMed     Abstract available


  123. EVANS JM, Parker HG, Rutteman GR, Plassais J, et al
    Multi-omics approach identifies germline regulatory variants associated with hematopoietic malignancies in retriever dog breeds.
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  124. HOSKENS H, Liu D, Naqvi S, Lee MK, et al
    3D facial phenotyping by biometric sibling matching used in contemporary genomic methodologies.
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    April 2021
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    The genomics of rapid climatic adaptation and parallel evolution in North American house mice.
    PLoS Genet. 2021;17:e1009495.
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  126. GARCIA-BAYONA L, Coyne MJ, Comstock LE
    Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering.
    PLoS Genet. 2021;17:e1009541.
    PubMed     Abstract available


    March 2021
  127. LUCEK K, Willi Y
    Drivers of linkage disequilibrium across a species' geographic range.
    PLoS Genet. 2021;17:e1009477.
    PubMed     Abstract available


  128. CARNEIRO M, Vieillard J, Andrade P, Boucher S, et al
    A loss-of-function mutation in RORB disrupts saltatorial locomotion in rabbits.
    PLoS Genet. 2021;17:e1009429.
    PubMed     Abstract available


  129. LI J, Sun L, Peng XL, Yu XM, et al
    Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons.
    PLoS Genet. 2021;17:e1009355.
    PubMed     Abstract available


  130. WILLIS K, Burt A
    Double drives and private alleles for localised population genetic control.
    PLoS Genet. 2021;17:e1009333.
    PubMed     Abstract available


  131. MOLLER M, Habig M, Lorrain C, Feurtey A, et al
    Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.
    PLoS Genet. 2021;17:e1009448.
    PubMed     Abstract available


  132. HANNON E, Mansell G, Walker E, Nabais MF, et al
    Assessing the co-variability of DNA methylation across peripheral cells and tissues: Implications for the interpretation of findings in epigenetic epidemiology.
    PLoS Genet. 2021;17:e1009443.
    PubMed     Abstract available


  133. KORUNES KL, Goldberg A
    Human genetic admixture.
    PLoS Genet. 2021;17:e1009374.
    PubMed     Abstract available


  134. KERMINEN S, Cerioli N, Pacauskas D, Havulinna AS, et al
    Changes in the fine-scale genetic structure of Finland through the 20th century.
    PLoS Genet. 2021;17:e1009347.
    PubMed     Abstract available


  135. WALKER CR, Scally A, De Maio N, Goldman N, et al
    Short-range template switching in great ape genomes explored using pair hidden Markov models.
    PLoS Genet. 2021;17:e1009221.
    PubMed     Abstract available


    February 2021
  136. GARUD NR, Messer PW, Petrov DA
    Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data.
    PLoS Genet. 2021;17:e1009373.
    PubMed     Abstract available


  137. LIU N, Xu J, Liu H, Zhang S, et al
    Hippocampal transcriptome-wide association study and neurobiological pathway analysis for Alzheimer's disease.
    PLoS Genet. 2021;17:e1009363.
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  138. ANDRADE P, Gazda MA, Araujo PM, Afonso S, et al
    Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates.
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  139. BROVKINA MV, Duffie R, Burtis AEC, Clowney EJ, et al
    Fruitless decommissions regulatory elements to implement cell-type-specific neuronal masculinization.
    PLoS Genet. 2021;17:e1009338.
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  140. YU MHC, Chan MCY, Chung CCY, Li AWT, et al
    Actionable pharmacogenetic variants in Hong Kong Chinese exome sequencing data and projected prescription impact in the Hong Kong population.
    PLoS Genet. 2021;17:e1009323.
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  141. LENZ J, Liefke R, Funk J, Shoup S, et al
    Ush regulates hemocyte-specific gene expression, fatty acid metabolism and cell cycle progression and cooperates with dNuRD to orchestrate hematopoiesis.
    PLoS Genet. 2021;17:e1009318.
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  142. LANGNER T, Harant A, Gomez-Luciano LB, Shrestha RK, et al
    Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus.
    PLoS Genet. 2021;17:e1009386.
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  143. ZHANG JL, Fu SJ, Chen SJ, Chen HH, et al
    Vestigial mediates the effect of insulin signaling pathway on wing-morph switching in planthoppers.
    PLoS Genet. 2021;17:e1009312.
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  144. YELMEN B, Decelle A, Ongaro L, Marnetto D, et al
    Creating artificial human genomes using generative neural networks.
    PLoS Genet. 2021;17:e1009303.
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  145. ZHANG W, Huang J, Cook DE
    Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae.
    PLoS Genet. 2021;17:e1009376.
    PubMed     Abstract available


  146. FARRIS J, Alam MS, Rajashekara AM, Haldar K, et al
    Genomic analyses of glycine decarboxylase neurogenic mutations yield a large-scale prediction model for prenatal disease.
    PLoS Genet. 2021;17:e1009307.
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    January 2021
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    Probing the aggregated effects of purifying selection per individual on 1,380 medical phenotypes in the UK Biobank.
    PLoS Genet. 2021;17:e1009337.
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  148. WIETERS B, Steige KA, He F, Koch EM, et al
    Polygenic adaptation of rosette growth in Arabidopsis thaliana.
    PLoS Genet. 2021;17:e1008748.
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  149. OCHOA A, Storey JD
    Estimating FST and kinship for arbitrary population structures.
    PLoS Genet. 2021;17:e1009241.
    PubMed     Abstract available


  150. FEDER AF, Pennings PS, Petrov DA
    The clarifying role of time series data in the population genetics of HIV.
    PLoS Genet. 2021;17:e1009050.
    PubMed     Abstract available


  151. SAINI N, Giacobone CK, Klimczak LJ, Papas BN, et al
    UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin.
    PLoS Genet. 2021;17:e1009302.
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  152. MONNAHAN PJ, Colicchio J, Fishman L, Macdonald SJ, et al
    Predicting evolutionary change at the DNA level in a natural Mimulus population.
    PLoS Genet. 2021;17:e1008945.
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  153. MINETA K, Goto K, Gojobori T, Alkuraya FS, et al
    Population structure of indigenous inhabitants of Arabia.
    PLoS Genet. 2021;17:e1009210.
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  154. LEHMAN BJ, Lopez-Diaz FJ, Santisakultarm TP, Fang L, et al
    Dynamic regulation of CTCF stability and sub-nuclear localization in response to stress.
    PLoS Genet. 2021;17:e1009277.
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    December 2020
  155. SCHWABL P, Maiguashca Sanchez J, Costales JA, Ocana-Mayorga S, et al
    Culture-free genome-wide locus sequence typing (GLST) provides new perspectives on Trypanosoma cruzi dispersal and infection complexity.
    PLoS Genet. 2020;16:e1009170.
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  156. SWAN AL, Schutt C, Rozman J, Del Mar Muniz Moreno M, et al
    Mouse mutant phenotyping at scale reveals novel genes controlling bone mineral density.
    PLoS Genet. 2020;16:e1009190.
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    November 2020
  157. BALACHANDRA VK, Verma J, Shankar M, Tucey TM, et al
    The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traits.
    PLoS Genet. 2020;16:e1009071.
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  158. LECA I, Phillips AW, Hofer I, Landler L, et al
    A proteomic survey of microtubule-associated proteins in a R402H TUBA1A mutant mouse.
    PLoS Genet. 2020;16:e1009104.
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  159. GOLDSTEIN JA, Weinstock JS, Bastarache LA, Larach DB, et al
    LabWAS: Novel findings and study design recommendations from a meta-analysis of clinical labs in two independent biobanks.
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  160. DIOFANO F, Weinmann K, Schneider I, Thiessen KD, et al
    Genetic compensation prevents myopathy and heart failure in an in vivo model of Bag3 deficiency.
    PLoS Genet. 2020;16:e1009088.
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    October 2020
  161. WATSON JA, Taylor AR, Ashley EA, Dondorp A, et al
    A cautionary note on the use of unsupervised machine learning algorithms to characterise malaria parasite population structure from genetic distance matrices.
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  162. QIAN J, Tanigawa Y, Du W, Aguirre M, et al
    A fast and scalable framework for large-scale and ultrahigh-dimensional sparse regression with application to the UK Biobank.
    PLoS Genet. 2020;16:e1009141.
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  163. ZHANG W, Schoenebeck JJ
    The ninth life of the cat reference genome, Felis_catus.
    PLoS Genet. 2020;16:e1009045.
    PubMed    


  164. BROWN DW, Lin SH, Loh PR, Chanock SJ, et al
    Genetically predicted telomere length is associated with clonal somatic copy number alterations in peripheral leukocytes.
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  165. BUCKLEY RM, Davis BW, Brashear WA, Farias FHG, et al
    A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism.
    PLoS Genet. 2020;16:e1008926.
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  166. ATZINGER A, Lawrence JG
    Selection for ancient periodic motifs that do not impart DNA bending.
    PLoS Genet. 2020;16:e1009042.
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  167. BOURGEOIS Y, Ruggiero RP, Hariyani I, Boissinot S, et al
    Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations.
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  168. DIAZ-SANTIAGO E, Jabato FM, Rojano E, Seoane P, et al
    Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases.
    PLoS Genet. 2020;16:e1009054.
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    September 2020
  169. GROSS C, Bortoluzzi C, de Ridder D, Megens HJ, et al
    Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD.
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    Coordinate genomic association of transcription factors controlled by an imported quorum sensing peptide in Cryptococcus neoformans.
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  171. MULLEN DJ, Yan C, Kang DS, Zhou B, et al
    TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma.
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  172. DESHPANDE O, Lara RZ, Zhang OR, Concepcion D, et al
    ZNF423 patient variants, truncations, and in-frame deletions in mice define an allele-dependent range of midline brain abnormalities.
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    Genetic analysis of the modern Australian labradoodle dog breed reveals an excess of the poodle genome.
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  174. STRUNZ T, Kiel C, Grassmann F, Ratnapriya R, et al
    A mega-analysis of expression quantitative trait loci in retinal tissue.
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  175. STEIN V, Blank-Landeshammer B, Muntjes K, Marker R, et al
    The STRIPAK signaling complex regulates dephosphorylation of GUL1, an RNA-binding protein that shuttles on endosomes.
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