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Influenza

Free Subscription Articles published in PLoS Comput Biol Retrieve available abstracts of 260 articles: HTML format

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May 2024
1. LOPEZ VK, Cramer EY, Pagano R, Drake JM, et al
   Challenges of COVID-19 Case Forecasting in the US, 2020-2021.
   PLoS Comput Biol. 2024;20:e1011200.
   PubMed     Abstract available
   
   
   
2. ASPLIN P, Keeling MJ, Mancy R, Hill EM, et al
   Epidemiological and health economic implications of symptom propagation in respiratory pathogens: A mathematical modelling investigation.
   PLoS Comput Biol. 2024;20:e1012096.
   PubMed     Abstract available
   
   
   April 2024
3. BENISTON E, Skittrall JP
   Locations and structures of influenza A virus packaging-associated signals and other functional elements via an in silico pipeline for predicting constrained features in RNA viruses.
   PLoS Comput Biol. 2024;20:e1012009.
   PubMed     Abstract available
   
   
   
4. LISON A, Abbott S, Huisman J, Stadler T, et al
   Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates.
   PLoS Comput Biol. 2024;20:e1012021.
   PubMed     Abstract available
   
   
   
5. BOUMAN JA, Hauser A, Grimm SL, Wohlfender M, et al
   Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models.
   PLoS Comput Biol. 2024;20:e1011575.
   PubMed     Abstract available
   
   
   March 2024
6. SHAO Y, Magee AF, Vasylyeva TI, Suchard MA, et al
   Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models.
   PLoS Comput Biol. 2024;20:e1011640.
   PubMed     Abstract available
   
   
   
7. JIJON S, Czuppon P, Blanquart F, Debarre F, et al
   Using early detection data to estimate the date of emergence of an epidemic outbreak.
   PLoS Comput Biol. 2024;20:e1011934.
   PubMed     Abstract available
   
   
   
8. HASSE T, Mantei E, Shahoei R, Pawnikar S, et al
   Mechanistic insights into ligand dissociation from the SARS-CoV-2 spike glycoprotein.
   PLoS Comput Biol. 2024;20:e1011955.
   PubMed     Abstract available
   
   
   
9. PUNG R, Russell TW, Kucharski AJ
   Detecting changes in generation and serial intervals under varying pathogen biology, contact patterns and outbreak response.
   PLoS Comput Biol. 2024;20:e1011967.
   PubMed     Abstract available
   
   
   
10. ATAMER BALKAN B, Chang Y, Sparnaaij M, Wouda B, et al
    The multi-dimensional challenges of controlling respiratory virus transmission in indoor spaces: Insights from the linkage of a microscopic pedestrian simulation and SARS-CoV-2 transmission model.
    PLoS Comput Biol. 2024;20:e1011956.
    PubMed     Abstract available
    
    
    January 2024
11. CHAN LYH, Ro G, Midtbo JE, Di Ruscio F, et al
    Modeling geographic vaccination strategies for COVID-19 in Norway.
    PLoS Comput Biol. 2024;20:e1011426.
    PubMed     Abstract available
    
    
    
12. SHIN B, An G, Cockrell RC
    Examining B-cell dynamics and responsiveness in different inflammatory milieus using an agent-based model.
    PLoS Comput Biol. 2024;20:e1011776.
    PubMed     Abstract available
    
    
    
13. GRUNNILL M, Arino J, McCarthy Z, Bragazzi NL, et al
    Modelling disease mitigation at mass gatherings: A case study of COVID-19 at the 2022 FIFA World Cup.
    PLoS Comput Biol. 2024;20:e1011018.
    PubMed     Abstract available
    
    
    
14. PLANK MJ, Watson L, Maclaren OJ
    Near-term forecasting of Covid-19 cases and hospitalisations in Aotearoa New Zealand.
    PLoS Comput Biol. 2024;20:e1011752.
    PubMed     Abstract available
    
    
    
15. RAMACHANDRAN A, Lumetta SS, Chen D
    PandoGen: Generating complete instances of future SARS-CoV-2 sequences using Deep Learning.
    PLoS Comput Biol. 2024;20:e1011790.
    PubMed     Abstract available
    
    
    
16. VAN BOVEN M, van Dorp CH, Westerhof I, Jaddoe V, et al
    Estimation of introduction and transmission rates of SARS-CoV-2 in a prospective household study.
    PLoS Comput Biol. 2024;20:e1011832.
    PubMed     Abstract available
    
    
    
17. LAMB KD, Luka MM, Saathoff M, Orton RJ, et al
    Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules.
    PLoS Comput Biol. 2024;20:e1011795.
    PubMed     Abstract available
    
    
    December 2023
18. MOREL JD, Morel JM, Alvarez L
    Time warping between main epidemic time series in epidemiological surveillance.
    PLoS Comput Biol. 2023;19:e1011757.
    PubMed     Abstract available
    
    
    
19. JOHNSON KE, Pasco R, Woody S, Lachmann M, et al
    Optimizing COVID-19 testing strategies on college campuses: Evaluation of the health and economic costs.
    PLoS Comput Biol. 2023;19:e1011715.
    PubMed     Abstract available
    
    
    
20. ISLAM MA, Getz M, Macklin P, Ford Versypt AN, et al
    An agent-based modeling approach for lung fibrosis in response to COVID-19.
    PLoS Comput Biol. 2023;19:e1011741.
    PubMed     Abstract available
    
    
    November 2023
21. ALAHAKOON P, Taylor PG, McCaw JM
    How effective were Australian Quarantine Stations in mitigating transmission aboard ships during the influenza pandemic of 1918-19?
    PLoS Comput Biol. 2023;19:e1011656.
    PubMed     Abstract available
    
    
    
22. DRAKE JM, Handel A, Marty E, O'Dea EB, et al
    A data-driven semi-parametric model of SARS-CoV-2 transmission in the United States.
    PLoS Comput Biol. 2023;19:e1011610.
    PubMed     Abstract available
    
    
    
23. WOOD AJ, Sanchez AR, Bessell PR, Wightman R, et al
    Assessing the importance of demographic risk factors across two waves of SARS-CoV-2 using fine-scale case data.
    PLoS Comput Biol. 2023;19:e1011611.
    PubMed     Abstract available
    
    
    
24. BROCKHAUS EK, Wolffram D, Stadler T, Osthege M, et al
    Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany.
    PLoS Comput Biol. 2023;19:e1011653.
    PubMed     Abstract available
    
    
    
25. VAN DER ROEST BR, Bootsma MCJ, Fischer EAJ, Klinkenberg D, et al
    A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms.
    PLoS Comput Biol. 2023;19:e1010928.
    PubMed     Abstract available
    
    
    
26. WARD T, Morris M, Gelman A, Carpenter B, et al
    Bayesian spatial modelling of localised SARS-CoV-2 transmission through mobility networks across England.
    PLoS Comput Biol. 2023;19:e1011580.
    PubMed     Abstract available
    
    
    October 2023
27. HE M, Tang S, Xiao Y
    Combining the dynamic model and deep neural networks to identify the intensity of interventions during COVID-19 pandemic.
    PLoS Comput Biol. 2023;19:e1011535.
    PubMed     Abstract available
    
    
    September 2023
28. ZHOU Z, Li D, Zhao Z, Shi S, et al
    Dynamical modelling of viral infection and cooperative immune protection in COVID-19 patients.
    PLoS Comput Biol. 2023;19:e1011383.
    PubMed     Abstract available
    
    
    
29. ZHANG K, Xia Z, Huang S, Sun GQ, et al
    Evaluating the impact of test-trace-isolate for COVID-19 management and alternative strategies.
    PLoS Comput Biol. 2023;19:e1011423.
    PubMed     Abstract available
    
    
    
30. MUNDAY JD, Abbott S, Meakin S, Funk S, et al
    Evaluating the use of social contact data to produce age-specific short-term forecasts of SARS-CoV-2 incidence in England.
    PLoS Comput Biol. 2023;19:e1011453.
    PubMed     Abstract available
    
    
    
31. OVERTON CE, Abbott S, Christie R, Cumming F, et al
    Nowcasting the 2022 mpox outbreak in England.
    PLoS Comput Biol. 2023;19:e1011463.
    PubMed     Abstract available
    
    
    
32. WANG Z, Wu P, Wang L, Li B, et al
    Marginal effects of public health measures and COVID-19 disease burden in China: A large-scale modelling study.
    PLoS Comput Biol. 2023;19:e1011492.
    PubMed     Abstract available
    
    
    August 2023
33. MORRIS M, Hayes P, Cox IJ, Lampos V, et al
    Neural network models for influenza forecasting with associated uncertainty using Web search activity trends.
    PLoS Comput Biol. 2023;19:e1011392.
    PubMed     Abstract available
    
    
    
34. CLAIRON Q, Prague M, Planas D, Bruel T, et al
    Modeling the kinetics of the neutralizing antibody response against SARS-CoV-2 variants after several administrations of Bnt162b2.
    PLoS Comput Biol. 2023;19:e1011282.
    PubMed     Abstract available
    
    
    
35. WOLFFRAM D, Abbott S, An der Heiden M, Funk S, et al
    Collaborative nowcasting of COVID-19 hospitalization incidences in Germany.
    PLoS Comput Biol. 2023;19:e1011394.
    PubMed     Abstract available
    
    
    
36. RAACH B, Bundgaard N, Haase MJ, Starruss J, et al
    Influence of cell type specific infectivity and tissue composition on SARS-CoV-2 infection dynamics within human airway epithelium.
    PLoS Comput Biol. 2023;19:e1011356.
    PubMed     Abstract available
    
    
    
37. YEDIDYA Y, Davis D, Drier Y
    SARS-CoV-2 infection perturbs enhancer mediated transcriptional regulation of key pathways.
    PLoS Comput Biol. 2023;19:e1011397.
    PubMed     Abstract available
    
    
    
38. MARC A, Marlin R, Donati F, Prague M, et al
    Impact of variants of concern on SARS-CoV-2 viral dynamics in non-human primates.
    PLoS Comput Biol. 2023;19:e1010721.
    PubMed     Abstract available
    
    
    
39. BOSSE NI, Abbott S, Cori A, van Leeuwen E, et al
    Scoring epidemiological forecasts on transformed scales.
    PLoS Comput Biol. 2023;19:e1011393.
    PubMed     Abstract available
    
    
    
40. NASH RK, Bhatt S, Cori A, Nouvellet P, et al
    Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool.
    PLoS Comput Biol. 2023;19:e1011439.
    PubMed     Abstract available
    
    
    July 2023
41. SERVADIO JL, Thai PQ, Choisy M, Boni MF, et al
    Repeatability and timing of tropical influenza epidemics.
    PLoS Comput Biol. 2023;19:e1011317.
    PubMed     Abstract available
    
    
    
42. LOU S, Yang M, Li T, Zhao W, et al
    Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes.
    PLoS Comput Biol. 2023;19:e1011222.
    PubMed     Abstract available
    
    
    
43. ANDRESS C, Kappel K, Villena ME, Cuperlovic-Culf M, et al
    DAPTEV: Deep aptamer evolutionary modelling for COVID-19 drug design.
    PLoS Comput Biol. 2023;19:e1010774.
    PubMed     Abstract available
    
    
    
44. PARAG KV, Obolski U
    Risk averse reproduction numbers improve resurgence detection.
    PLoS Comput Biol. 2023;19:e1011332.
    PubMed     Abstract available
    
    
    
45. YANG W, Shaman J
    Development of Accurate Long-lead COVID-19 Forecast.
    PLoS Comput Biol. 2023;19:e1011278.
    PubMed     Abstract available
    
    
    June 2023
46. FOX SJ, Javan E, Pasco R, Gibson GC, et al
    Disproportionate impacts of COVID-19 in a large US city.
    PLoS Comput Biol. 2023;19:e1011149.
    PubMed     Abstract available
    
    
    
47. DAN S, Chen Y, Chen Y, Monod M, et al
    Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model.
    PLoS Comput Biol. 2023;19:e1011191.
    PubMed     Abstract available
    
    
    
48. MOREL JD, Morel JM, Alvarez L
    Learning from the past: A short term forecast method for the COVID-19 incidence curve.
    PLoS Comput Biol. 2023;19:e1010790.
    PubMed     Abstract available
    
    
    
49. XIONG YX, Wang MG, Chen L, Zhang XF, et al
    Cell-type annotation with accurate unseen cell-type identification using multiple references.
    PLoS Comput Biol. 2023;19:e1011261.
    PubMed     Abstract available
    
    
    
50. BRETT TS, Bansal S, Rohani P
    Charting the spatial dynamics of early SARS-CoV-2 transmission in Washington state.
    PLoS Comput Biol. 2023;19:e1011263.
    PubMed     Abstract available
    
    
    May 2023
51. MICHALSKI M, Setny P
    Two modes of fusogenic action for influenza virus fusion peptide.
    PLoS Comput Biol. 2023;19:e1011174.
    PubMed     Abstract available
    
    
    
52. SPERRY MM, Oskotsky TT, Maric I, Kaushal S, et al
    Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients.
    PLoS Comput Biol. 2023;19:e1011050.
    PubMed     Abstract available
    
    
    
53. IYANIWURA SA, Ringa N, Adu PA, Mak S, et al
    Understanding the impact of mobility on COVID-19 spread: A hybrid gravity-metapopulation model of COVID-19.
    PLoS Comput Biol. 2023;19:e1011123.
    PubMed     Abstract available
    
    
    
54. GHOSH S, Birrell PJ, De Angelis D
    An approximate diffusion process for environmental stochasticity in infectious disease transmission modelling.
    PLoS Comput Biol. 2023;19:e1011088.
    PubMed     Abstract available
    
    
    
55. SEKAR RV, Oliva PJ, Woodside MT
    Modelling the structures of frameshift-stimulatory pseudoknots from representative bat coronaviruses.
    PLoS Comput Biol. 2023;19:e1011124.
    PubMed     Abstract available
    
    
    
56. SUNAGAWA J, Komorizono R, Park H, Hart WS, et al
    Contact-number-driven virus evolution: A multi-level modeling framework for the evolution of acute or persistent RNA virus infection.
    PLoS Comput Biol. 2023;19:e1011173.
    PubMed     Abstract available
    
    
    April 2023
57. ZHAO C, Zhang J, Hou X, Yeung CH, et al
    A high-frequency mobility big-data reveals how COVID-19 spread across professions, locations and age groups.
    PLoS Comput Biol. 2023;19:e1011083.
    PubMed     Abstract available
    
    
    March 2023
58. HARVEY WT, Davies V, Daniels RS, Whittaker L, et al
    A Bayesian approach to incorporate structural data into the mapping of genotype to antigenic phenotype of influenza A(H3N2) viruses.
    PLoS Comput Biol. 2023;19:e1010885.
    PubMed     Abstract available
    
    
    
59. MURGA A, Bale R, Li CG, Ito K, et al
    Large eddy simulation of droplet transport and deposition in the human respiratory tract to evaluate inhalation risk.
    PLoS Comput Biol. 2023;19:e1010972.
    PubMed     Abstract available
    
    
    
60. DAUTEL KA, Agyingi E, Pathmanathan P
    Validation framework for epidemiological models with application to COVID-19 models.
    PLoS Comput Biol. 2023;19:e1010968.
    PubMed     Abstract available
    
    
    
61. LEONIDOU N, Renz A, Mostolizadeh R, Drager A, et al
    New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells.
    PLoS Comput Biol. 2023;19:e1010903.
    PubMed     Abstract available
    
    
    
62. CAPPELLO L, Kim J, Palacios JA
    adaPop: Bayesian inference of dependent population dynamics in coalescent models.
    PLoS Comput Biol. 2023;19:e1010897.
    PubMed     Abstract available
    
    
    February 2023
63. HAW DJ, Biggerstaff M, Prasad P, Walker J, et al
    Using real-time data to guide decision-making during an influenza pandemic: A modelling analysis.
    PLoS Comput Biol. 2023;19:e1010893.
    PubMed     Abstract available
    
    
    
64. LI K, McCaw JM, Cao P
    Enhanced viral infectivity and reduced interferon production are associated with high pathogenicity for influenza viruses.
    PLoS Comput Biol. 2023;19:e1010886.
    PubMed     Abstract available
    
    
    
65. NIELSEN BF, Saad-Roy CM, Li Y, Sneppen K, et al
    Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2.
    PLoS Comput Biol. 2023;19:e1010896.
    PubMed     Abstract available
    
    
    
66. TRINITY L, Wark I, Lansing L, Jabbari H, et al
    Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot.
    PLoS Comput Biol. 2023;19:e1010922.
    PubMed     Abstract available
    
    
    January 2023
67. ASHER J, Lemenuel-Diot A, Clay M, Durham DP, et al
    Novel modelling approaches to predict the role of antivirals in reducing influenza transmission.
    PLoS Comput Biol. 2023;19:e1010797.
    PubMed     Abstract available
    
    
    
68. CHEN J, Tan S, Avadhanula V, Moise L, et al
    Diversity and evolution of computationally predicted T cell epitopes against human respiratory syncytial virus.
    PLoS Comput Biol. 2023;19:e1010360.
    PubMed     Abstract available
    
    
    
69. MA M, Lei X
    A dual graph neural network for drug-drug interactions prediction based on molecular structure and interactions.
    PLoS Comput Biol. 2023;19:e1010812.
    PubMed     Abstract available
    
    
    
70. VON BULOW S, Sikora M, Blanc FEC, Covino R, et al
    Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants.
    PLoS Comput Biol. 2023;19:e1010822.
    PubMed     Abstract available
    
    
    
71. ENGEBRETSEN S, Diz-Lois Palomares A, Ro G, Kristoffersen AB, et al
    A real-time regional model for COVID-19: Probabilistic situational awareness and forecasting.
    PLoS Comput Biol. 2023;19:e1010860.
    PubMed     Abstract available
    
    
    
72. MEHRJOU A, Soleymani A, Abyaneh A, Bhatt S, et al
    Pyfectious: An individual-level simulator to discover optimal containment policies for epidemic diseases.
    PLoS Comput Biol. 2023;19:e1010799.
    PubMed     Abstract available
    
    
    December 2022
73. BREEN CF, Mahmud AS, Feehan DM
    Novel estimates reveal subnational heterogeneities in disease-relevant contact patterns in the United States.
    PLoS Comput Biol. 2022;18:e1010742.
    PubMed     Abstract available
    
    
    
74. BERGSTROM F, Gunther F, Hohle M, Britton T, et al
    Bayesian nowcasting with leading indicators applied to COVID-19 fatalities in Sweden.
    PLoS Comput Biol. 2022;18:e1010767.
    PubMed     Abstract available
    
    
    
75. RUMACK A, Tibshirani RJ, Rosenfeld R
    Recalibrating probabilistic forecasts of epidemics.
    PLoS Comput Biol. 2022;18:e1010771.
    PubMed     Abstract available
    
    
    November 2022
76. PERLINSKA AP, Stasiulewicz A, Nguyen ML, Swiderska K, et al
    Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding.
    PLoS Comput Biol. 2022;18:e1010667.
    PubMed     Abstract available
    
    
    
77. EALES O, Wang H, Haw D, Ainslie KEC, et al
    Trends in SARS-CoV-2 infection prevalence during England's roadmap out of lockdown, January to July 2021.
    PLoS Comput Biol. 2022;18:e1010724.
    PubMed     Abstract available
    
    
    October 2022
78. LIN Y, Loo L, Tran A, Lin DM, et al
    Scalable workflow for characterization of cell-cell communication in COVID-19 patients.
    PLoS Comput Biol. 2022;18:e1010495.
    PubMed     Abstract available
    
    
    
79. PEREZ-LOPEZ E, Gavrilova L, Disla J, Goodlad M, et al
    Ten simple rules for creating and sustaining antiracist graduate programs.
    PLoS Comput Biol. 2022;18:e1010516.
    PubMed     Abstract available
    
    
    
80. ESPANA G, Perkins TA, Pollett SD, Smith ME, et al
    Prioritizing interventions for preventing COVID-19 outbreaks in military basic training.
    PLoS Comput Biol. 2022;18:e1010489.
    PubMed     Abstract available
    
    
    
81. CHOWELL G, Dahal S, Tariq A, Roosa K, et al
    An ensemble n-sub-epidemic modeling framework for short-term forecasting epidemic trajectories: Application to the COVID-19 pandemic in the USA.
    PLoS Comput Biol. 2022;18:e1010602.
    PubMed     Abstract available
    
    
    
82. GRESSANI O, Wallinga J, Althaus CL, Hens N, et al
    EpiLPS: A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.
    PLoS Comput Biol. 2022;18:e1010618.
    PubMed     Abstract available
    
    
    
83. HAZRA DK, Pujari BS, Shekatkar SM, Mozaffer F, et al
    Modelling the first wave of COVID-19 in India.
    PLoS Comput Biol. 2022;18:e1010632.
    PubMed     Abstract available
    
    
    
84. WALDSTEIN KA, Yi J, Cho M, Mudumbai R, et al
    Use of compressed sensing to expedite high-throughput diagnostic testing for COVID-19 and beyond.
    PLoS Comput Biol. 2022;18:e1010629.
    PubMed     Abstract available
    
    
    
85. OVERTON CE, Webb L, Datta U, Fursman M, et al
    Novel methods for estimating the instantaneous and overall COVID-19 case fatality risk among care home residents in England.
    PLoS Comput Biol. 2022;18:e1010554.
    PubMed     Abstract available
    
    
    September 2022
86. WALTARI E, Nafees S, McCutcheon KM, Wong J, et al
    AIRRscape: An interactive tool for exploring B-cell receptor repertoires and antibody responses.
    PLoS Comput Biol. 2022;18:e1010052.
    PubMed     Abstract available
    
    
    
87. LI Q, Huang Y
    Optimizing global COVID-19 vaccine allocation: An agent-based computational model of 148 countries.
    PLoS Comput Biol. 2022;18:e1010463.
    PubMed     Abstract available
    
    
    
88. ZHOU Z, Kolaczyk ED, Thompson RN, White LF, et al
    Estimation of heterogeneous instantaneous reproduction numbers with application to characterize SARS-CoV-2 transmission in Massachusetts counties.
    PLoS Comput Biol. 2022;18:e1010434.
    PubMed     Abstract available
    
    
    
89. OVERTON CE, Pellis L, Stage HB, Scarabel F, et al
    EpiBeds: Data informed modelling of the COVID-19 hospital burden in England.
    PLoS Comput Biol. 2022;18:e1010406.
    PubMed     Abstract available
    
    
    
90. HILTON J, Riley H, Pellis L, Aziza R, et al
    A computational framework for modelling infectious disease policy based on age and household structure with applications to the COVID-19 pandemic.
    PLoS Comput Biol. 2022;18:e1010390.
    PubMed     Abstract available
    
    
    
91. KREFL D, Bergmann S
    Cross-GWAS coherence test at the gene and pathway level.
    PLoS Comput Biol. 2022;18:e1010517.
    PubMed     Abstract available
    
    
    
92. WANG E, Chakraborty AK
    Design of immunogens for eliciting antibody responses that may protect against SARS-CoV-2 variants.
    PLoS Comput Biol. 2022;18:e1010563.
    PubMed     Abstract available
    
    
    
93. MCANDREW T, Reich NG
    An expert judgment model to predict early stages of the COVID-19 pandemic in the United States.
    PLoS Comput Biol. 2022;18:e1010485.
    PubMed     Abstract available
    
    
    
94. ZHANG L, Chen L, Yu XA, Duvallet C, et al
    MicrobiomeCensus estimates human population sizes from wastewater samples based on inter-individual variability in gut microbiomes.
    PLoS Comput Biol. 2022;18:e1010472.
    PubMed     Abstract available
    
    
    
95. BOSSE NI, Abbott S, Bracher J, Hain H, et al
    Comparing human and model-based forecasts of COVID-19 in Germany and Poland.
    PLoS Comput Biol. 2022;18:e1010405.
    PubMed     Abstract available
    
    
    August 2022
96. BARRAT-CHARLAIX P, Vaughan TG, Neher RA
    TreeKnit: Inferring ancestral reassortment graphs of influenza viruses.
    PLoS Comput Biol. 2022;18:e1010394.
    PubMed     Abstract available
    
    
    
97. YIN S, Xu Y, Xu M, de Jong MCM, et al
    Habitat loss exacerbates pathogen spread: An Agent-based model of avian influenza infection in migratory waterfowl.
    PLoS Comput Biol. 2022;18:e1009577.
    PubMed     Abstract available
    
    
    
98. ZHANG X, Lobinska G, Feldman M, Dekel E, et al
    A spatial vaccination strategy to reduce the risk of vaccine-resistant variants.
    PLoS Comput Biol. 2022;18:e1010391.
    PubMed     Abstract available
    
    
    
99. HEITZMAN-BREEN N, Ciupe SM
    Modeling within-host and aerosol dynamics of SARS-CoV-2: The relationship with infectiousness.
    PLoS Comput Biol. 2022;18:e1009997.
    PubMed     Abstract available
    
    
    
100. BEN-NUN M, Riley P, Turtle J, Riley S, et al
     Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic.
     PLoS Comput Biol. 2022;18:e1010375.
     PubMed     Abstract available
     
     
     
101. SHCHUR V, Spirin V, Sirotkin D, Burovski E, et al
     VGsim: Scalable viral genealogy simulator for global pandemic.
     PLoS Comput Biol. 2022;18:e1010409.
     PubMed     Abstract available
     
     
     
102. KUYLEN EJ, Torneri A, Willem L, Libin PJK, et al
     Different forms of superspreading lead to different outcomes: Heterogeneity in infectiousness and contact behavior relevant for the case of SARS-CoV-2.
     PLoS Comput Biol. 2022;18:e1009980.
     PubMed     Abstract available
     
     
     
103. CHITWOOD MH, Russi M, Gunasekera K, Havumaki J, et al
     Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis model.
     PLoS Comput Biol. 2022;18:e1010465.
     PubMed     Abstract available
     
     
     
104. PIRETTO E, Selvaggio G, Bragantini D, Domenici E, et al
     A novel logical model of COVID-19 intracellular infection to support therapies development.
     PLoS Comput Biol. 2022;18:e1010443.
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